RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 SCAF1Q9H7N4 1312 aaKnown RBP13.74□□□□□ -0.21
PCDH9-204ENST00000544246 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
PCDH9-204ENST00000544246 TULP1O00294 542 aaPredicted RBP13.73□□□□□ -0.21
PCDH9-204ENST00000544246 CECR2Q9BXF3 1484 aa13.73□□□□□ -0.21
PCDH9-204ENST00000544246 P3H3Q8IVL6 736 aa13.71□□□□□ -0.21
PCDH9-204ENST00000544246 TRHP20396 242 aaPredicted RBP13.7□□□□□ -0.22
PCDH9-204ENST00000544246 GOLGA6L6A8MZA4 724 aa13.69□□□□□ -0.22
PCDH9-204ENST00000544246 CASC1Q6TDU7 716 aa13.68□□□□□ -0.22
PCDH9-204ENST00000544246 NAP1L5Q96NT1 182 aaPredicted RBP13.68□□□□□ -0.22
PCDH9-204ENST00000544246 DDX10Q13206 875 aaKnown RBP13.67□□□□□ -0.22
PCDH9-204ENST00000544246 TPRNQ4KMQ1 711 aa13.64□□□□□ -0.23
PCDH9-204ENST00000544246 ERICH6BQ5W0A0 696 aa13.64□□□□□ -0.23
PCDH9-204ENST00000544246 ZBTB7CA1YPR0 619 aa13.64□□□□□ -0.23
PCDH9-204ENST00000544246 MRS2Q9HD23 443 aa13.63□□□□□ -0.23
PCDH9-204ENST00000544246 IRX6P78412 446 aaPredicted RBP13.6□□□□□ -0.23
PCDH9-204ENST00000544246 NRDCO43847 1150 aa13.58□□□□□ -0.24
PCDH9-204ENST00000544246 PLCB2Q00722 1185 aa13.57□□□□□ -0.24
PCDH9-204ENST00000544246 PPM1GO15355 546 aaPredicted RBP13.57□□□□□ -0.24
PCDH9-204ENST00000544246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.56□□□□□ -0.24
PCDH9-204ENST00000544246 C14orf37Q86TY3 774 aa13.56□□□□□ -0.24
PCDH9-204ENST00000544246 DCAF1Q9Y4B6 1507 aa13.54□□□□□ -0.24
PCDH9-204ENST00000544246 CHAF1AQ13111 956 aaPredicted RBP13.53□□□□□ -0.24
PCDH9-204ENST00000544246 PDS5BQ9NTI5 1447 aa13.52□□□□□ -0.24
PCDH9-204ENST00000544246 AMER1Q5JTC6 1135 aaPredicted RBP13.51□□□□□ -0.25
PCDH9-204ENST00000544246 KDM2AQ9Y2K7 1162 aa13.51□□□□□ -0.25
PCDH9-204ENST00000544246 PLEKHG5O94827 1062 aa13.51□□□□□ -0.25
PCDH9-204ENST00000544246 NCBP3Q53F19 620 aaKnown RBP13.51□□□□□ -0.25
PCDH9-204ENST00000544246 L1TD1Q5T7N2 865 aaKnown RBP13.5□□□□□ -0.25
PCDH9-204ENST00000544246 TAOK2Q9UL54 1235 aa13.5□□□□□ -0.25
PCDH9-204ENST00000544246 CLSTN1O94985 981 aa13.49□□□□□ -0.25
PCDH9-204ENST00000544246 FTSJ3Q8IY81 847 aaKnown RBP13.49□□□□□ -0.25
PCDH9-204ENST00000544246 BAZ1AQ9NRL2 1556 aaPredicted RBP13.48□□□□□ -0.25
PCDH9-204ENST00000544246 RTN4Q9NQC3 1192 aaKnown RBP13.48□□□□□ -0.25
PCDH9-204ENST00000544246 HSP90AB1P08238 724 aaKnown RBP13.47□□□□□ -0.25
PCDH9-204ENST00000544246 HAP1P54257 671 aaPredicted RBP13.47□□□□□ -0.25
PCDH9-204ENST00000544246 CFAP53Q96M91 514 aa13.46□□□□□ -0.25
PCDH9-204ENST00000544246 FGD1P98174 961 aa13.46□□□□□ -0.25
PCDH9-204ENST00000544246 SMARCA2P51531 1590 aa13.45□□□□□ -0.26
PCDH9-204ENST00000544246 CSRNP3Q8WYN3 585 aa13.45□□□□□ -0.26
PCDH9-204ENST00000544246 CHIC2Q9UKJ5 165 aa13.44□□□□□ -0.26
PCDH9-204ENST00000544246 PPP1R15AO75807 674 aaPredicted RBP13.44□□□□□ -0.26
PCDH9-204ENST00000544246 MSNP26038 577 aaKnown RBP13.44□□□□□ -0.26
PCDH9-204ENST00000544246 NPHP1O15259 732 aa13.43□□□□□ -0.26
PCDH9-204ENST00000544246 LAS1LQ9Y4W2 734 aaKnown RBP13.43□□□□□ -0.26
PCDH9-204ENST00000544246 GOLGA6L4A6NEF3 574 aa13.43□□□□□ -0.26
PCDH9-204ENST00000544246 NAP1L2Q9ULW6 460 aaPredicted RBP13.43□□□□□ -0.26
PCDH9-204ENST00000544246 MYO15BQ96JP2 1530 aa13.42□□□□□ -0.26
PCDH9-204ENST00000544246 PNNQ9H307 717 aaKnown RBP13.42□□□□□ -0.26
PCDH9-204ENST00000544246 DRC7Q8IY82 874 aa13.42□□□□□ -0.26
PCDH9-204ENST00000544246 OS9Q13438 667 aaPredicted RBP13.41□□□□□ -0.26
PCDH9-204ENST00000544246 KCNJ4P48050 445 aa13.4□□□□□ -0.26
PCDH9-204ENST00000544246 KIAA2012Q0VF49 1180 aa13.4□□□□□ -0.26
PCDH9-204ENST00000544246 TSPY4P0CV99 314 aa13.39□□□□□ -0.27
PCDH9-204ENST00000544246 TSPY10P0CW01 314 aa13.39□□□□□ -0.27
PCDH9-204ENST00000544246 CHMP4BQ9H444 224 aaKnown RBP13.39□□□□□ -0.27
PCDH9-204ENST00000544246 EIF4G2P78344 907 aaKnown RBP eCLIP13.38□□□□□ -0.279e-10■■■■■ 41.2
PCDH9-204ENST00000544246 GOLGA2Q08379 1002 aa13.38□□□□□ -0.27
PCDH9-204ENST00000544246 NOC3LQ8WTT2 800 aaKnown RBP13.38□□□□□ -0.27
PCDH9-204ENST00000544246 NOP58Q9Y2X3 529 aaKnown RBP13.37□□□□□ -0.27
PCDH9-204ENST00000544246 MAPK8IP3Q9UPT6 1336 aa13.36□□□□□ -0.27
PCDH9-204ENST00000544246 HSCBQ8IWL3 235 aa13.35□□□□□ -0.27
PCDH9-204ENST00000544246 SENP3Q9H4L4 574 aaPredicted RBP13.35□□□□□ -0.27
PCDH9-204ENST00000544246 TNNT3P45378 269 aaPredicted RBP13.34□□□□□ -0.27
PCDH9-204ENST00000544246 PRM3Q9NNZ6 103 aa13.34□□□□□ -0.27
PCDH9-204ENST00000544246 RGS3P49796 1198 aa13.33□□□□□ -0.27
PCDH9-204ENST00000544246 MIER1Q8N108 512 aa13.33□□□□□ -0.28
PCDH9-204ENST00000544246 CDCA8Q53HL2 280 aa13.33□□□□□ -0.28
PCDH9-204ENST00000544246 MCCP23508 829 aa13.33□□□□□ -0.28
PCDH9-204ENST00000544246 AEBP2Q6ZN18 517 aaPredicted RBP13.33□□□□□ -0.28
PCDH9-204ENST00000544246 KNSTRNQ9Y448 316 aa13.33□□□□□ -0.28
PCDH9-204ENST00000544246 ARID4BQ4LE39 1312 aaPredicted RBP13.32□□□□□ -0.28
PCDH9-204ENST00000544246 MS4A1P11836 297 aa13.32□□□□□ -0.28
PCDH9-204ENST00000544246 KCNH8Q96L42 1107 aa13.32□□□□□ -0.28
PCDH9-204ENST00000544246 HIRIP3Q9BW71 556 aaPredicted RBP13.31□□□□□ -0.28
PCDH9-204ENST00000544246 DNAJC5BQ9UF47 199 aa13.31□□□□□ -0.28
PCDH9-204ENST00000544246 GNL2Q13823 731 aaKnown RBP13.3□□□□□ -0.28
PCDH9-204ENST00000544246 NUDCQ9Y266 331 aa13.3□□□□□ -0.28
PCDH9-204ENST00000544246 OSCARQ8IYS5 282 aa13.29□□□□□ -0.28
PCDH9-204ENST00000544246 ISY1Q9ULR0 285 aaKnown RBP13.29□□□□□ -0.28
PCDH9-204ENST00000544246 RSF1Q96T23 1441 aaPredicted RBP13.29□□□□□ -0.28
PCDH9-204ENST00000544246 FRAT1Q92837 279 aaPredicted RBP13.29□□□□□ -0.28
PCDH9-204ENST00000544246 NEUROD2Q15784 382 aa13.28□□□□□ -0.28
PCDH9-204ENST00000544246 A0A0U1RQG5 324 aaPredicted RBP13.28□□□□□ -0.28
PCDH9-204ENST00000544246 PPP4R2Q9NY27 417 aa13.27□□□□□ -0.28
PCDH9-204ENST00000544246 SUPT16HQ9Y5B9 1047 aaKnown RBP13.27□□□□□ -0.29
PCDH9-204ENST00000544246 GOLGA6L1Q8N7Z2 621 aa13.27□□□□□ -0.29
PCDH9-204ENST00000544246 PTMSP20962 102 aa13.25□□□□□ -0.29
PCDH9-204ENST00000544246 CFAP44Q96MT7 982 aa13.25□□□□□ -0.29
PCDH9-204ENST00000544246 MTUS2Q5JR59 1369 aa13.24□□□□□ -0.29
PCDH9-204ENST00000544246 EIF4G1Q04637 1599 aaKnown RBP13.24□□□□□ -0.29
PCDH9-204ENST00000544246 CADPSQ9ULU8 1353 aa13.24□□□□□ -0.29
PCDH9-204ENST00000544246 SENP3-EIF4A1A0A087X0R7 540 aa13.23□□□□□ -0.29
PCDH9-204ENST00000544246 CEP164Q9UPV0 1460 aa13.23□□□□□ -0.29
PCDH9-204ENST00000544246 TPM4P67936 248 aa13.23□□□□□ -0.29
PCDH9-204ENST00000544246 LMOD2Q6P5Q4 547 aa13.22□□□□□ -0.29
PCDH9-204ENST00000544246 CYB5RLQ6IPT4 315 aa13.21□□□□□ -0.29
PCDH9-204ENST00000544246 USP35Q9P2H5 1018 aa13.21□□□□□ -0.29
PCDH9-204ENST00000544246 SPRYD3Q8NCJ5 442 aa13.21□□□□□ -0.29
PCDH9-204ENST00000544246 HTATSF1O43719 755 aaKnown RBP13.2□□□□□ -0.3
PCDH9-204ENST00000544246 ARID3AQ99856 593 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms