RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 DDRGK1Q96HY6 314 aa20.46■□□□□ 0.87
CHD4-210ENST00000544040 PTMAP06454 111 aaKnown RBP20.46■□□□□ 0.87
CHD4-210ENST00000544040 TNNT2P45379 298 aaPredicted RBP20.45■□□□□ 0.86
CHD4-210ENST00000544040 ZBTB7CA1YPR0 619 aa20.44■□□□□ 0.86
CHD4-210ENST00000544040 DNTTIP2Q5QJE6 756 aaKnown RBP20.44■□□□□ 0.86
CHD4-210ENST00000544040 NAP1L5Q96NT1 182 aaPredicted RBP20.41■□□□□ 0.86
CHD4-210ENST00000544040 TULP1O00294 542 aaPredicted RBP20.41■□□□□ 0.86
CHD4-210ENST00000544040 GOLGA6L22H0YM25 854 aa20.39■□□□□ 0.86
CHD4-210ENST00000544040 LAS1LQ9Y4W2 734 aaKnown RBP20.37■□□□□ 0.85
CHD4-210ENST00000544040 ANP32EQ9BTT0 268 aa20.36■□□□□ 0.85
CHD4-210ENST00000544040 ABCC9O60706 1549 aa20.36■□□□□ 0.85
CHD4-210ENST00000544040 TAOK2Q9UL54 1235 aa20.32■□□□□ 0.84
CHD4-210ENST00000544040 ZRSR1Q15695 479 aaKnown RBP20.31■□□□□ 0.84
CHD4-210ENST00000544040 PLCB2Q00722 1185 aa20.29■□□□□ 0.84
CHD4-210ENST00000544040 C14orf37Q86TY3 774 aa20.28■□□□□ 0.84
CHD4-210ENST00000544040 AMER1Q5JTC6 1135 aaPredicted RBP20.27■□□□□ 0.83
CHD4-210ENST00000544040 SUPT16HQ9Y5B9 1047 aaKnown RBP20.25■□□□□ 0.83
CHD4-210ENST00000544040 ERICH6BQ5W0A0 696 aa20.23■□□□□ 0.83
CHD4-210ENST00000544040 EIF4G2P78344 907 aaKnown RBP eCLIP20.19■□□□□ 0.82
CHD4-210ENST00000544040 CASC1Q6TDU7 716 aa20.19■□□□□ 0.82
CHD4-210ENST00000544040 PPM1GO15355 546 aaPredicted RBP20.18■□□□□ 0.82
CHD4-210ENST00000544040 RGS3P49796 1198 aa20.17■□□□□ 0.82
CHD4-210ENST00000544040 FTSJ3Q8IY81 847 aaKnown RBP20.16■□□□□ 0.82
CHD4-210ENST00000544040 NPM1P06748 294 aaKnown RBP eCLIP20.14■□□□□ 0.82
CHD4-210ENST00000544040 NEUROD2Q15784 382 aa20.14■□□□□ 0.81
CHD4-210ENST00000544040 RRP7BPQ9NSQ0 103 aa20.13■□□□□ 0.81
CHD4-210ENST00000544040 NOP58Q9Y2X3 529 aaKnown RBP20.13■□□□□ 0.81
CHD4-210ENST00000544040 DCAF1Q9Y4B6 1507 aa20.12■□□□□ 0.81
CHD4-210ENST00000544040 TSPY4P0CV99 314 aa20.12■□□□□ 0.81
CHD4-210ENST00000544040 TSPY10P0CW01 314 aa20.12■□□□□ 0.81
CHD4-210ENST00000544040 ARID4BQ4LE39 1312 aaPredicted RBP20.12■□□□□ 0.81
CHD4-210ENST00000544040 HSP90AB1P08238 724 aaKnown RBP20.09■□□□□ 0.81
CHD4-210ENST00000544040 RGL3Q3MIN7 710 aa20.09■□□□□ 0.81
CHD4-210ENST00000544040 FRAT1Q92837 279 aaPredicted RBP20.06■□□□□ 0.8
CHD4-210ENST00000544040 SPRYD3Q8NCJ5 442 aa20.04■□□□□ 0.8
CHD4-210ENST00000544040 PPP1R15AO75807 674 aaPredicted RBP20.04■□□□□ 0.8
CHD4-210ENST00000544040 NAP1L2Q9ULW6 460 aaPredicted RBP20.04■□□□□ 0.8
CHD4-210ENST00000544040 MTUS2Q5JR59 1369 aa20.03■□□□□ 0.8
CHD4-210ENST00000544040 CFAP53Q96M91 514 aa20.02■□□□□ 0.8
CHD4-210ENST00000544040 GOLGA6L6A8MZA4 724 aa20.02■□□□□ 0.8
CHD4-210ENST00000544040 B4GALNT3Q6L9W6 998 aa20■□□□□ 0.79
CHD4-210ENST00000544040 KNSTRNQ9Y448 316 aa20■□□□□ 0.79
CHD4-210ENST00000544040 PPP4R2Q9NY27 417 aa19.99■□□□□ 0.79
CHD4-210ENST00000544040 ARID3AQ99856 593 aa19.98■□□□□ 0.79
CHD4-210ENST00000544040 FGD1P98174 961 aa19.98■□□□□ 0.79
CHD4-210ENST00000544040 NCBP3Q53F19 620 aaKnown RBP19.98■□□□□ 0.79
CHD4-210ENST00000544040 DEKP35659 375 aaKnown RBP19.97■□□□□ 0.79
CHD4-210ENST00000544040 HAP1P54257 671 aaPredicted RBP19.96■□□□□ 0.79
CHD4-210ENST00000544040 OS9Q13438 667 aaPredicted RBP19.95■□□□□ 0.78
CHD4-210ENST00000544040 MSNP26038 577 aaKnown RBP19.94■□□□□ 0.78
CHD4-210ENST00000544040 MAPK8IP3Q9UPT6 1336 aa19.93■□□□□ 0.78
CHD4-210ENST00000544040 CHAF1AQ13111 956 aaPredicted RBP19.93■□□□□ 0.78
CHD4-210ENST00000544040 KCNJ4P48050 445 aa19.93■□□□□ 0.78
CHD4-210ENST00000544040 CC2D1BQ5T0F9 858 aaKnown RBP19.92■□□□□ 0.78
CHD4-210ENST00000544040 DRC7Q8IY82 874 aa19.92■□□□□ 0.78
CHD4-210ENST00000544040 CARD11Q9BXL7 1154 aa19.9■□□□□ 0.78
CHD4-210ENST00000544040 GOLGA6L4A6NEF3 574 aa19.89■□□□□ 0.78
CHD4-210ENST00000544040 KCNH8Q96L42 1107 aa19.89■□□□□ 0.78
CHD4-210ENST00000544040 HSCBQ8IWL3 235 aa19.89■□□□□ 0.77
CHD4-210ENST00000544040 NRDCO43847 1150 aa19.88■□□□□ 0.77
CHD4-210ENST00000544040 CLSTN1O94985 981 aa19.87■□□□□ 0.77
CHD4-210ENST00000544040 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.86■□□□□ 0.77
CHD4-210ENST00000544040 NPHP1O15259 732 aa19.85■□□□□ 0.77
CHD4-210ENST00000544040 LMOD2Q6P5Q4 547 aa19.84■□□□□ 0.77
CHD4-210ENST00000544040 L1TD1Q5T7N2 865 aaKnown RBP19.83■□□□□ 0.77
CHD4-210ENST00000544040 U2SURPO15042 1029 aaKnown RBP19.83■□□□□ 0.76
CHD4-210ENST00000544040 CDCA8Q53HL2 280 aa19.8■□□□□ 0.76
CHD4-210ENST00000544040 CLIP1P30622 1438 aa19.8■□□□□ 0.76
CHD4-210ENST00000544040 NUDCQ9Y266 331 aa19.8■□□□□ 0.76
CHD4-210ENST00000544040 GZF1Q9H116 711 aaPredicted RBP19.79■□□□□ 0.76
CHD4-210ENST00000544040 SIN3AQ96ST3 1273 aa19.78■□□□□ 0.76
CHD4-210ENST00000544040 GOLGA2Q08379 1002 aa19.77■□□□□ 0.75
CHD4-210ENST00000544040 CHMP7Q8WUX9 453 aaPredicted RBP19.76■□□□□ 0.75
CHD4-210ENST00000544040 RBM19Q9Y4C8 960 aaKnown RBP19.75■□□□□ 0.75
CHD4-210ENST00000544040 APBB1O00213 710 aa19.73■□□□□ 0.75
CHD4-210ENST00000544040 POGKQ9P215 609 aa19.73■□□□□ 0.75
CHD4-210ENST00000544040 SCRIBQ14160 1630 aa19.72■□□□□ 0.75
CHD4-210ENST00000544040 CHMP4BQ9H444 224 aaKnown RBP19.71■□□□□ 0.75
CHD4-210ENST00000544040 ISY1Q9ULR0 285 aaKnown RBP19.71■□□□□ 0.75
CHD4-210ENST00000544040 MCCP23508 829 aa19.7■□□□□ 0.74
CHD4-210ENST00000544040 SOX12O15370 315 aa19.7■□□□□ 0.74
CHD4-210ENST00000544040 ZCCHC6Q5VYS8 1495 aaKnown RBP19.69■□□□□ 0.74
CHD4-210ENST00000544040 MS4A1P11836 297 aa19.69■□□□□ 0.74
CHD4-210ENST00000544040 PNNQ9H307 717 aaKnown RBP19.69■□□□□ 0.74
CHD4-210ENST00000544040 GNL2Q13823 731 aaKnown RBP19.68■□□□□ 0.74
CHD4-210ENST00000544040 SLKQ9H2G2 1235 aaPredicted RBP19.67■□□□□ 0.74
CHD4-210ENST00000544040 PLEKHD1A6NEE1 506 aa19.65■□□□□ 0.74
CHD4-210ENST00000544040 NOC3LQ8WTT2 800 aaKnown RBP19.64■□□□□ 0.73
CHD4-210ENST00000544040 TNNT3P45378 269 aaPredicted RBP19.64■□□□□ 0.73
CHD4-210ENST00000544040 KIAA2012Q0VF49 1180 aa19.62■□□□□ 0.73
CHD4-210ENST00000544040 RSF1Q96T23 1441 aaPredicted RBP19.62■□□□□ 0.73
CHD4-210ENST00000544040 CFDP1Q9UEE9 299 aaPredicted RBP19.61■□□□□ 0.73
CHD4-210ENST00000544040 PDE4CQ08493 712 aa19.61■□□□□ 0.73
CHD4-210ENST00000544040 CEP162Q5TB80 1403 aa19.59■□□□□ 0.73
CHD4-210ENST00000544040 GBP4Q96PP9 640 aa19.59■□□□□ 0.73
CHD4-210ENST00000544040 MYO15BQ96JP2 1530 aa19.59■□□□□ 0.73
CHD4-210ENST00000544040 SAFB2Q14151 953 aaKnown RBP eCLIP19.55■□□□□ 0.72
CHD4-210ENST00000544040 KIAA1211Q6ZU35 1233 aa19.55■□□□□ 0.72
CHD4-210ENST00000544040 FOXD4L1Q9NU39 408 aa19.54■□□□□ 0.72
CHD4-210ENST00000544040 TMF1P82094 1093 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms