RNA–Protein interactions for RNA: ENST00000542381.1

SRGAP1-204, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 360 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-204ENST00000542381 RASEFQ8IZ41 740 aa17.27■□□□□ 0.36
SRGAP1-204ENST00000542381 PELP1Q8IZL8 1130 aaKnown RBP17.25■□□□□ 0.35
SRGAP1-204ENST00000542381 KIF12Q96FN5 646 aa17.2■□□□□ 0.34
SRGAP1-204ENST00000542381 ASTLQ6HA08 431 aaPredicted RBP17.16■□□□□ 0.34
SRGAP1-204ENST00000542381 POTEB2H3BUK9 544 aa17.15■□□□□ 0.34
SRGAP1-204ENST00000542381 ATMINO43313 823 aaPredicted RBP17.15■□□□□ 0.34
SRGAP1-204ENST00000542381 MAP3K13O43283 966 aa17.12■□□□□ 0.33
SRGAP1-204ENST00000542381 NUBP1P53384 320 aa17.11■□□□□ 0.33
SRGAP1-204ENST00000542381 ZBTB47Q9UFB7 747 aaPredicted RBP17.1■□□□□ 0.33
SRGAP1-204ENST00000542381 TRPC6Q9Y210 931 aa17.09■□□□□ 0.33
SRGAP1-204ENST00000542381 METRNQ9UJH8 293 aa17.05■□□□□ 0.32
SRGAP1-204ENST00000542381 ATN1P54259 1190 aaPredicted RBP17.04■□□□□ 0.32
SRGAP1-204ENST00000542381 OTUD5Q96G74 571 aa17.04■□□□□ 0.32
SRGAP1-204ENST00000542381 SLC39A7Q92504 469 aa17.02■□□□□ 0.32
SRGAP1-204ENST00000542381 BMP2KQ9NSY1 1161 aaPredicted RBP17.01■□□□□ 0.31
SRGAP1-204ENST00000542381 C7P10643 843 aa17■□□□□ 0.31
SRGAP1-204ENST00000542381 FBXO3Q9UK99 471 aa16.99■□□□□ 0.31
SRGAP1-204ENST00000542381 TIE1P35590 1138 aa16.93■□□□□ 0.3
SRGAP1-204ENST00000542381 FAM212AQ96EL1 285 aa16.93■□□□□ 0.3
SRGAP1-204ENST00000542381 PCDHB13Q9Y5F0 798 aa16.93■□□□□ 0.3
SRGAP1-204ENST00000542381 POTEJP0CG39 1038 aa16.92■□□□□ 0.3
SRGAP1-204ENST00000542381 SGIP1Q9BQI5 828 aa16.88■□□□□ 0.29
SRGAP1-204ENST00000542381 TTLL13PA6NNM8 815 aa16.87■□□□□ 0.29
SRGAP1-204ENST00000542381 IFNL1Q8IU54 200 aa16.86■□□□□ 0.29
SRGAP1-204ENST00000542381 POTEFA5A3E0 1075 aa16.85■□□□□ 0.29
SRGAP1-204ENST00000542381 VASPP50552 380 aaPredicted RBP16.84■□□□□ 0.29
SRGAP1-204ENST00000542381 DCAF8Q5TAQ9 597 aa16.84■□□□□ 0.29
SRGAP1-204ENST00000542381 KLHL34Q8N239 644 aa16.78■□□□□ 0.28
SRGAP1-204ENST00000542381 PYGBP11216 843 aa16.77■□□□□ 0.28
SRGAP1-204ENST00000542381 TRIM35Q9UPQ4 493 aa16.76■□□□□ 0.27
SRGAP1-204ENST00000542381 COLQQ9Y215 455 aaPredicted RBP16.75■□□□□ 0.27
SRGAP1-204ENST00000542381 MAMSTRQ6ZN01 415 aa16.72■□□□□ 0.27
SRGAP1-204ENST00000542381 TMEM106CQ9BVX2 250 aa16.71■□□□□ 0.27
SRGAP1-204ENST00000542381 SEC24BO95487 1268 aa16.7■□□□□ 0.26
SRGAP1-204ENST00000542381 PCDHB8Q9UN66 801 aa16.66■□□□□ 0.26
SRGAP1-204ENST00000542381 IER5LQ5T953 404 aa16.65■□□□□ 0.26
SRGAP1-204ENST00000542381 SCUBE2Q9NQ36 999 aa16.65■□□□□ 0.26
SRGAP1-204ENST00000542381 GSE1Q14687 1217 aa16.6■□□□□ 0.25
SRGAP1-204ENST00000542381 IFNLR1Q8IU57 520 aaPredicted RBP16.58■□□□□ 0.24
SRGAP1-204ENST00000542381 POTEMA6NI47 508 aa16.52■□□□□ 0.24
SRGAP1-204ENST00000542381 IRX5P78411 483 aaPredicted RBP16.51■□□□□ 0.23
SRGAP1-204ENST00000542381 POTEGQ6S5H5 508 aa16.5■□□□□ 0.23
SRGAP1-204ENST00000542381 CHRM1P11229 460 aaPredicted RBP16.49■□□□□ 0.23
SRGAP1-204ENST00000542381 PLCG2P16885 1265 aa16.49■□□□□ 0.23
SRGAP1-204ENST00000542381 SPOCK2Q92563 424 aa16.48■□□□□ 0.23
SRGAP1-204ENST00000542381 LCE2DQ5TA82 110 aaPredicted RBP16.47■□□□□ 0.23
SRGAP1-204ENST00000542381 FAM163AQ96GL9 167 aaPredicted RBP16.47■□□□□ 0.23
SRGAP1-204ENST00000542381 ZNF467Q7Z7K2 595 aaPredicted RBP16.46■□□□□ 0.23
SRGAP1-204ENST00000542381 OCEL1Q9H607 264 aa16.42■□□□□ 0.22
SRGAP1-204ENST00000542381 CIZ1Q9ULV3 898 aaPredicted RBP16.42■□□□□ 0.22
SRGAP1-204ENST00000542381 PLSCR2Q9NRY7 297 aa16.4■□□□□ 0.22
SRGAP1-204ENST00000542381 PSEN1P49768 467 aa16.36■□□□□ 0.21
SRGAP1-204ENST00000542381 SLAIN1Q8ND83 568 aa16.36■□□□□ 0.21
SRGAP1-204ENST00000542381 GOLGA2Q08379 1002 aa16.3■□□□□ 0.2
SRGAP1-204ENST00000542381 MKRN3Q13064 507 aaKnown RBP16.29■□□□□ 0.2
SRGAP1-204ENST00000542381 PDCD7Q8N8D1 485 aaKnown RBP16.28■□□□□ 0.2
SRGAP1-204ENST00000542381 PDAP1Q13442 181 aaKnown RBP16.27■□□□□ 0.2
SRGAP1-204ENST00000542381 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.22■□□□□ 0.19
SRGAP1-204ENST00000542381 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.2■□□□□ 0.18
SRGAP1-204ENST00000542381 CABP2Q9NPB3 220 aa16.18■□□□□ 0.18
SRGAP1-204ENST00000542381 PCDH10Q9P2E7 1040 aa16.18■□□□□ 0.18
SRGAP1-204ENST00000542381 ST18O60284 1047 aa16.17■□□□□ 0.18
SRGAP1-204ENST00000542381 ILDR1Q86SU0 546 aaPredicted RBP16.13■□□□□ 0.17
SRGAP1-204ENST00000542381 L3MBTL3Q96JM7 780 aaPredicted RBP16.13■□□□□ 0.17
SRGAP1-204ENST00000542381 DPY19L2Q6NUT2 758 aa16.12■□□□□ 0.17
SRGAP1-204ENST00000542381 TRIM41Q8WV44 630 aa16.11■□□□□ 0.17
SRGAP1-204ENST00000542381 C3orf67Q6ZVT6 689 aa16.09■□□□□ 0.17
SRGAP1-204ENST00000542381 SNPHO15079 494 aa16.01■□□□□ 0.15
SRGAP1-204ENST00000542381 CDAN1Q8IWY9 1227 aa16.01■□□□□ 0.15
SRGAP1-204ENST00000542381 RNF25Q96BH1 459 aaPredicted RBP16.01■□□□□ 0.15
SRGAP1-204ENST00000542381 EFCAB3Q8N7B9 438 aa16■□□□□ 0.15
SRGAP1-204ENST00000542381 RIOK3O14730 519 aaKnown RBP15.96■□□□□ 0.15
SRGAP1-204ENST00000542381 BOLA1Q9Y3E2 137 aa15.96■□□□□ 0.15
SRGAP1-204ENST00000542381 MARVELD3Q96A59 401 aa15.93■□□□□ 0.14
SRGAP1-204ENST00000542381 TMEM121BQ9BXQ6 578 aaPredicted RBP15.93■□□□□ 0.14
SRGAP1-204ENST00000542381 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.91■□□□□ 0.14
SRGAP1-204ENST00000542381 G3V3G9 751 aa15.91■□□□□ 0.14
SRGAP1-204ENST00000542381 ZFP91Q96JP5 570 aaPredicted RBP15.91■□□□□ 0.14
SRGAP1-204ENST00000542381 VGFO15240 615 aaPredicted RBP15.86■□□□□ 0.13
SRGAP1-204ENST00000542381 SOX12O15370 315 aa15.79■□□□□ 0.12
SRGAP1-204ENST00000542381 MS4A4AQ96JQ5 239 aa15.79■□□□□ 0.12
SRGAP1-204ENST00000542381 PHF8Q9UPP1 1060 aa15.78■□□□□ 0.12
SRGAP1-204ENST00000542381 EMP3P54852 163 aa15.77■□□□□ 0.12
SRGAP1-204ENST00000542381 HOXB3P14651 431 aaPredicted RBP15.76■□□□□ 0.11
SRGAP1-204ENST00000542381 MICALL2Q8IY33 904 aa15.75■□□□□ 0.11
SRGAP1-204ENST00000542381 BCL11BQ9C0K0 894 aaPredicted RBP15.72■□□□□ 0.11
SRGAP1-204ENST00000542381 POTEB3A0JP26 581 aa15.71■□□□□ 0.11
SRGAP1-204ENST00000542381 POTEBQ6S5H4 581 aa15.71■□□□□ 0.11
SRGAP1-204ENST00000542381 TMEM92Q6UXU6 159 aa15.71■□□□□ 0.11
SRGAP1-204ENST00000542381 ECM2O94769 699 aaPredicted RBP15.7■□□□□ 0.1
SRGAP1-204ENST00000542381 FAM205CA6NFA0 338 aa15.69■□□□□ 0.1
SRGAP1-204ENST00000542381 HS3ST6Q96QI5 342 aa15.67■□□□□ 0.1
SRGAP1-204ENST00000542381 STK24Q9Y6E0 443 aa15.67■□□□□ 0.1
SRGAP1-204ENST00000542381 PKD2Q13563 968 aa15.66■□□□□ 0.1
SRGAP1-204ENST00000542381 TAOK2Q9UL54 1235 aa15.65■□□□□ 0.1
SRGAP1-204ENST00000542381 ZNF710Q8N1W2 664 aa15.64■□□□□ 0.09
SRGAP1-204ENST00000542381 SPNS2Q8IVW8 549 aa15.63■□□□□ 0.09
SRGAP1-204ENST00000542381 FBXO22Q8NEZ5 403 aa15.63■□□□□ 0.09
SRGAP1-204ENST00000542381 NLRP6P59044 892 aa15.62■□□□□ 0.09
SRGAP1-204ENST00000542381 DOK7Q18PE1 504 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms