RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 GSE1Q14687 1217 aa8.95□□□□□ -0.98
USP28-210ENST00000542033 RASEFQ8IZ41 740 aa8.95□□□□□ -0.98
USP28-210ENST00000542033 DCAF8Q5TAQ9 597 aa8.94□□□□□ -0.98
USP28-210ENST00000542033 CLCN6P51797 869 aa8.91□□□□□ -0.98
USP28-210ENST00000542033 ZNF579Q8NAF0 562 aaKnown RBP8.9□□□□□ -0.98
USP28-210ENST00000542033 CIZ1Q9ULV3 898 aaPredicted RBP8.9□□□□□ -0.98
USP28-210ENST00000542033 PLSCR2Q9NRY7 297 aa8.89□□□□□ -0.99
USP28-210ENST00000542033 CCDC61Q9Y6R9 512 aa8.88□□□□□ -0.99
USP28-210ENST00000542033 TRIM41Q8WV44 630 aa8.87□□□□□ -0.99
USP28-210ENST00000542033 AMER1Q5JTC6 1135 aaPredicted RBP8.86□□□□□ -0.99
USP28-210ENST00000542033 PHF12Q96QT6 1004 aa8.83□□□□□ -1
USP28-210ENST00000542033 PYGBP11216 843 aa8.8□□□□□ -1
USP28-210ENST00000542033 CHRM1P11229 460 aaPredicted RBP8.8□□□□□ -1
USP28-210ENST00000542033 KIF12Q96FN5 646 aa8.8□□□□□ -1
USP28-210ENST00000542033 SGIP1Q9BQI5 828 aa8.8□□□□□ -1
USP28-210ENST00000542033 RTN4Q9NQC3 1192 aaKnown RBP8.8□□□□□ -1
USP28-210ENST00000542033 MAP3K13O43283 966 aa8.77□□□□□ -1.01
USP28-210ENST00000542033 PCDHB13Q9Y5F0 798 aa8.77□□□□□ -1.01
USP28-210ENST00000542033 ECM2O94769 699 aaPredicted RBP8.75□□□□□ -1.01
USP28-210ENST00000542033 POTEIP0CG38 1075 aa8.75□□□□□ -1.01
USP28-210ENST00000542033 ZNF467Q7Z7K2 595 aaPredicted RBP8.75□□□□□ -1.01
USP28-210ENST00000542033 PKD2Q13563 968 aa8.74□□□□□ -1.01
USP28-210ENST00000542033 MS4A3Q96HJ5 214 aa8.74□□□□□ -1.01
USP28-210ENST00000542033 GALR2O43603 387 aaPredicted RBP8.72□□□□□ -1.01
USP28-210ENST00000542033 DCBLD2Q96PD2 775 aa8.72□□□□□ -1.01
USP28-210ENST00000542033 TAOK2Q9UL54 1235 aa8.71□□□□□ -1.02
USP28-210ENST00000542033 IFNL1Q8IU54 200 aa8.69□□□□□ -1.02
USP28-210ENST00000542033 RIOK3O14730 519 aaKnown RBP8.67□□□□□ -1.02
USP28-210ENST00000542033 PCDHB8Q9UN66 801 aa8.67□□□□□ -1.02
USP28-210ENST00000542033 TIE1P35590 1138 aa8.66□□□□□ -1.02
USP28-210ENST00000542033 VGFO15240 615 aaPredicted RBP8.64□□□□□ -1.03
USP28-210ENST00000542033 PDAP1Q13442 181 aaKnown RBP8.64□□□□□ -1.03
USP28-210ENST00000542033 RGL2O15211 777 aa8.62□□□□□ -1.03
USP28-210ENST00000542033 RNF25Q96BH1 459 aaPredicted RBP8.62□□□□□ -1.03
USP28-210ENST00000542033 PSEN1P49768 467 aa8.61□□□□□ -1.03
USP28-210ENST00000542033 TMEM106CQ9BVX2 250 aa8.61□□□□□ -1.03
USP28-210ENST00000542033 ASTLQ6HA08 431 aaPredicted RBP8.6□□□□□ -1.03
USP28-210ENST00000542033 BMP2KQ9NSY1 1161 aaPredicted RBP8.6□□□□□ -1.03
USP28-210ENST00000542033 TRPC6Q9Y210 931 aa8.6□□□□□ -1.03
USP28-210ENST00000542033 TTLL13PA6NNM8 815 aa8.59□□□□□ -1.03
USP28-210ENST00000542033 ATMINO43313 823 aaPredicted RBP8.59□□□□□ -1.03
USP28-210ENST00000542033 GOLGA2Q08379 1002 aa8.57□□□□□ -1.04
USP28-210ENST00000542033 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.56□□□□□ -1.04
USP28-210ENST00000542033 DCAF8L2P0C7V8 631 aa8.56□□□□□ -1.04
USP28-210ENST00000542033 ZFP91Q96JP5 570 aaPredicted RBP8.56□□□□□ -1.04
USP28-210ENST00000542033 ATN1P54259 1190 aaPredicted RBP8.55□□□□□ -1.04
USP28-210ENST00000542033 TRIM35Q9UPQ4 493 aa8.55□□□□□ -1.04
USP28-210ENST00000542033 STK25O00506 426 aa8.53□□□□□ -1.04
USP28-210ENST00000542033 SLC39A7Q92504 469 aa8.53□□□□□ -1.04
USP28-210ENST00000542033 C7P10643 843 aa8.51□□□□□ -1.05
USP28-210ENST00000542033 MKRN3Q13064 507 aaKnown RBP8.51□□□□□ -1.05
USP28-210ENST00000542033 IER5LQ5T953 404 aa8.51□□□□□ -1.05
USP28-210ENST00000542033 OTUD5Q96G74 571 aa8.51□□□□□ -1.05
USP28-210ENST00000542033 BCL11BQ9C0K0 894 aaPredicted RBP8.51□□□□□ -1.05
USP28-210ENST00000542033 STK24Q9Y6E0 443 aa8.51□□□□□ -1.05
USP28-210ENST00000542033 CABP2Q9NPB3 220 aa8.5□□□□□ -1.05
USP28-210ENST00000542033 POTEMA6NI47 508 aa8.49□□□□□ -1.05
USP28-210ENST00000542033 CHGAP10645 457 aaKnown RBP8.49□□□□□ -1.05
USP28-210ENST00000542033 HS6ST3Q8IZP7 471 aa8.49□□□□□ -1.05
USP28-210ENST00000542033 PELP1Q8IZL8 1130 aaKnown RBP8.48□□□□□ -1.05
USP28-210ENST00000542033 METRNQ9UJH8 293 aa8.47□□□□□ -1.05
USP28-210ENST00000542033 POTEB2H3BUK9 544 aa8.46□□□□□ -1.06
USP28-210ENST00000542033 SEC24BO95487 1268 aa8.46□□□□□ -1.06
USP28-210ENST00000542033 POTEGQ6S5H5 508 aa8.45□□□□□ -1.06
USP28-210ENST00000542033 SOX12O15370 315 aa8.44□□□□□ -1.06
USP28-210ENST00000542033 PLCG2P16885 1265 aa8.44□□□□□ -1.06
USP28-210ENST00000542033 EFCAB3Q8N7B9 438 aa8.43□□□□□ -1.06
USP28-210ENST00000542033 OCEL1Q9H607 264 aa8.42□□□□□ -1.06
USP28-210ENST00000542033 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.42□□□□□ -1.062e-6■□□□□ 8.4
USP28-210ENST00000542033 IRX5P78411 483 aaPredicted RBP8.4□□□□□ -1.06
USP28-210ENST00000542033 DNAJC5Q9H3Z4 198 aa8.4□□□□□ -1.06
USP28-210ENST00000542033 NLRP6P59044 892 aa8.39□□□□□ -1.07
USP28-210ENST00000542033 RYDENQ9NUL5 291 aaKnown RBP8.39□□□□□ -1.07
USP28-210ENST00000542033 MAMSTRQ6ZN01 415 aa8.36□□□□□ -1.07
USP28-210ENST00000542033 COLQQ9Y215 455 aaPredicted RBP8.36□□□□□ -1.07
USP28-210ENST00000542033 ILDR1Q86SU0 546 aaPredicted RBP8.35□□□□□ -1.07
USP28-210ENST00000542033 BBXQ8WY36 941 aaPredicted RBP8.35□□□□□ -1.07
USP28-210ENST00000542033 PHF8Q9UPP1 1060 aa8.35□□□□□ -1.07
USP28-210ENST00000542033 G3V3G9 751 aa8.34□□□□□ -1.07
USP28-210ENST00000542033 PDCD7Q8N8D1 485 aaKnown RBP8.34□□□□□ -1.07
USP28-210ENST00000542033 L3MBTL3Q96JM7 780 aaPredicted RBP8.34□□□□□ -1.07
USP28-210ENST00000542033 MFRPQ9BY79 579 aa8.34□□□□□ -1.07
USP28-210ENST00000542033 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.34□□□□□ -1.07
USP28-210ENST00000542033 PCDH10Q9P2E7 1040 aa8.34□□□□□ -1.07
USP28-210ENST00000542033 POTEFA5A3E0 1075 aa8.33□□□□□ -1.08
USP28-210ENST00000542033 FBXO22Q8NEZ5 403 aa8.31□□□□□ -1.08
USP28-210ENST00000542033 NKX1-1Q15270 411 aaPredicted RBP8.29□□□□□ -1.08
USP28-210ENST00000542033 MS4A4AQ96JQ5 239 aa8.29□□□□□ -1.08
USP28-210ENST00000542033 SCUBE2Q9NQ36 999 aa8.29□□□□□ -1.08
USP28-210ENST00000542033 BOLA1Q9Y3E2 137 aa8.28□□□□□ -1.08
USP28-210ENST00000542033 POTEJP0CG39 1038 aa8.27□□□□□ -1.09
USP28-210ENST00000542033 DPY19L2Q6NUT2 758 aa8.27□□□□□ -1.09
USP28-210ENST00000542033 C3orf67Q6ZVT6 689 aa8.26□□□□□ -1.09
USP28-210ENST00000542033 LCE2DQ5TA82 110 aaPredicted RBP8.25□□□□□ -1.09
USP28-210ENST00000542033 SPRYD3Q8NCJ5 442 aa8.25□□□□□ -1.09
USP28-210ENST00000542033 GTPBP6O43824 516 aaPredicted RBP8.24□□□□□ -1.09
USP28-210ENST00000542033 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.24□□□□□ -1.09
USP28-210ENST00000542033 MICALL2Q8IY33 904 aa8.23□□□□□ -1.09
USP28-210ENST00000542033 FAM163AQ96GL9 167 aaPredicted RBP8.22□□□□□ -1.09
USP28-210ENST00000542033 PAXIP1Q6ZW49 1069 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms