RNA–Protein interactions for RNA: ENST00000538909.1

CBX3P4-201, Transcript of chromobox 3 pseudogene 4, humanhuman

BASIC

Gene CBX3P4, Length 354 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-201ENST00000538909 ATMINO43313 823 aaPredicted RBP8.78□□□□□ -1
CBX3P4-201ENST00000538909 POTEJP0CG39 1038 aa8.77□□□□□ -1.01
CBX3P4-201ENST00000538909 ASTLQ6HA08 431 aaPredicted RBP8.77□□□□□ -1.01
CBX3P4-201ENST00000538909 SLC39A7Q92504 469 aa8.76□□□□□ -1.01
CBX3P4-201ENST00000538909 TSPYL2Q9H2G4 693 aaPredicted RBP8.76□□□□□ -1.01
CBX3P4-201ENST00000538909 C7P10643 843 aa8.75□□□□□ -1.01
CBX3P4-201ENST00000538909 EHMT2Q96KQ7 1210 aa8.72□□□□□ -1.01
CBX3P4-201ENST00000538909 MAMSTRQ6ZN01 415 aa8.71□□□□□ -1.02
CBX3P4-201ENST00000538909 FAM163AQ96GL9 167 aaPredicted RBP8.71□□□□□ -1.02
CBX3P4-201ENST00000538909 ATN1P54259 1190 aaPredicted RBP8.7□□□□□ -1.02
CBX3P4-201ENST00000538909 LCE2DQ5TA82 110 aaPredicted RBP8.67□□□□□ -1.02
CBX3P4-201ENST00000538909 SCUBE2Q9NQ36 999 aa8.67□□□□□ -1.02
CBX3P4-201ENST00000538909 CCDC61Q9Y6R9 512 aa8.66□□□□□ -1.02
CBX3P4-201ENST00000538909 TRPC6Q9Y210 931 aa8.65□□□□□ -1.02
CBX3P4-201ENST00000538909 KIF12Q96FN5 646 aa8.64□□□□□ -1.03
CBX3P4-201ENST00000538909 BMP2KQ9NSY1 1161 aaPredicted RBP8.64□□□□□ -1.03
CBX3P4-201ENST00000538909 POTEFA5A3E0 1075 aa8.62□□□□□ -1.03
CBX3P4-201ENST00000538909 MAP3K13O43283 966 aa8.6□□□□□ -1.03
CBX3P4-201ENST00000538909 SEC24BO95487 1268 aa8.56□□□□□ -1.04
CBX3P4-201ENST00000538909 RASEFQ8IZ41 740 aa8.56□□□□□ -1.04
CBX3P4-201ENST00000538909 COLQQ9Y215 455 aaPredicted RBP8.56□□□□□ -1.04
CBX3P4-201ENST00000538909 TIE1P35590 1138 aa8.55□□□□□ -1.04
CBX3P4-201ENST00000538909 PROM2Q8N271 834 aa8.55□□□□□ -1.04
CBX3P4-201ENST00000538909 MIER1Q8N108 512 aa8.54□□□□□ -1.04
CBX3P4-201ENST00000538909 TTLL13PA6NNM8 815 aa8.53□□□□□ -1.04
CBX3P4-201ENST00000538909 PLEKHG5O94827 1062 aa8.53□□□□□ -1.04
CBX3P4-201ENST00000538909 CDAN1Q8IWY9 1227 aa8.5□□□□□ -1.05
CBX3P4-201ENST00000538909 TRIM35Q9UPQ4 493 aa8.49□□□□□ -1.05
CBX3P4-201ENST00000538909 PCDHB13Q9Y5F0 798 aa8.47□□□□□ -1.05
CBX3P4-201ENST00000538909 PLCD3Q8N3E9 789 aa8.45□□□□□ -1.06
CBX3P4-201ENST00000538909 SLAIN1Q8ND83 568 aa8.45□□□□□ -1.06
CBX3P4-201ENST00000538909 IER5LQ5T953 404 aa8.43□□□□□ -1.06
CBX3P4-201ENST00000538909 ST18O60284 1047 aa8.42□□□□□ -1.06
CBX3P4-201ENST00000538909 IFNL1Q8IU54 200 aa8.41□□□□□ -1.06
CBX3P4-201ENST00000538909 TMEM106CQ9BVX2 250 aa8.4□□□□□ -1.06
CBX3P4-201ENST00000538909 PLCG2P16885 1265 aa8.39□□□□□ -1.07
CBX3P4-201ENST00000538909 SGIP1Q9BQI5 828 aa8.39□□□□□ -1.07
CBX3P4-201ENST00000538909 NUBP1P53384 320 aa8.37□□□□□ -1.07
CBX3P4-201ENST00000538909 FAM212AQ96EL1 285 aa8.34□□□□□ -1.07
CBX3P4-201ENST00000538909 ZBTB47Q9UFB7 747 aaPredicted RBP8.33□□□□□ -1.08
CBX3P4-201ENST00000538909 IRX5P78411 483 aaPredicted RBP8.32□□□□□ -1.08
CBX3P4-201ENST00000538909 MMRN1Q13201 1228 aa8.3□□□□□ -1.08
CBX3P4-201ENST00000538909 MARVELD3Q96A59 401 aa8.3□□□□□ -1.08
CBX3P4-201ENST00000538909 SPNS2Q8IVW8 549 aa8.29□□□□□ -1.08
CBX3P4-201ENST00000538909 OCEL1Q9H607 264 aa8.28□□□□□ -1.08
CBX3P4-201ENST00000538909 PYGBP11216 843 aa8.27□□□□□ -1.09
CBX3P4-201ENST00000538909 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.27□□□□□ -1.09
CBX3P4-201ENST00000538909 SNPHO15079 494 aa8.25□□□□□ -1.09
CBX3P4-201ENST00000538909 DCAF8Q5TAQ9 597 aa8.25□□□□□ -1.09
CBX3P4-201ENST00000538909 TMEM121BQ9BXQ6 578 aaPredicted RBP8.25□□□□□ -1.09
CBX3P4-201ENST00000538909 PCDHB8Q9UN66 801 aa8.25□□□□□ -1.09
CBX3P4-201ENST00000538909 EMP3P54852 163 aa8.19□□□□□ -1.1
CBX3P4-201ENST00000538909 C3orf67Q6ZVT6 689 aa8.18□□□□□ -1.1
CBX3P4-201ENST00000538909 FKBP8Q14318 412 aa8.16□□□□□ -1.1
CBX3P4-201ENST00000538909 GOLGA2Q08379 1002 aa8.15□□□□□ -1.1
CBX3P4-201ENST00000538909 PDCD7Q8N8D1 485 aaKnown RBP8.15□□□□□ -1.1
CBX3P4-201ENST00000538909 FAM205CA6NFA0 338 aa8.13□□□□□ -1.11
CBX3P4-201ENST00000538909 MKRN3Q13064 507 aaKnown RBP8.13□□□□□ -1.11
CBX3P4-201ENST00000538909 POTEB3A0JP26 581 aa8.12□□□□□ -1.11
CBX3P4-201ENST00000538909 POTEBQ6S5H4 581 aa8.12□□□□□ -1.11
CBX3P4-201ENST00000538909 HS3ST6Q96QI5 342 aa8.12□□□□□ -1.11
CBX3P4-201ENST00000538909 L3MBTL3Q96JM7 780 aaPredicted RBP8.11□□□□□ -1.11
CBX3P4-201ENST00000538909 KRTAP3-3Q9BYR6 98 aa8.11□□□□□ -1.11
CBX3P4-201ENST00000538909 KRTAP3-2Q9BYR7 98 aa8.11□□□□□ -1.11
CBX3P4-201ENST00000538909 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.11□□□□□ -1.11
CBX3P4-201ENST00000538909 ZNF467Q7Z7K2 595 aaPredicted RBP8.08□□□□□ -1.12
CBX3P4-201ENST00000538909 KLHL34Q8N239 644 aa8.07□□□□□ -1.12
CBX3P4-201ENST00000538909 PSEN1P49768 467 aa8.06□□□□□ -1.12
CBX3P4-201ENST00000538909 GSE1Q14687 1217 aa8.05□□□□□ -1.12
CBX3P4-201ENST00000538909 DPY19L2Q6NUT2 758 aa8.04□□□□□ -1.12
CBX3P4-201ENST00000538909 FBXO3Q9UK99 471 aa8.02□□□□□ -1.13
CBX3P4-201ENST00000538909 G3V3G9 751 aa8.01□□□□□ -1.13
CBX3P4-201ENST00000538909 CABP2Q9NPB3 220 aa7.99□□□□□ -1.13
CBX3P4-201ENST00000538909 CHRM1P11229 460 aaPredicted RBP7.98□□□□□ -1.13
CBX3P4-201ENST00000538909 HOXB3P14651 431 aaPredicted RBP7.98□□□□□ -1.13
CBX3P4-201ENST00000538909 ZNF710Q8N1W2 664 aa7.98□□□□□ -1.13
CBX3P4-201ENST00000538909 VASPP50552 380 aaPredicted RBP7.97□□□□□ -1.13
CBX3P4-201ENST00000538909 PDAP1Q13442 181 aaKnown RBP7.97□□□□□ -1.13
CBX3P4-201ENST00000538909 BOLA1Q9Y3E2 137 aa7.97□□□□□ -1.13
CBX3P4-201ENST00000538909 ERBB3P21860 1342 aa7.96□□□□□ -1.14
CBX3P4-201ENST00000538909 ILDR1Q86SU0 546 aaPredicted RBP7.95□□□□□ -1.14
CBX3P4-201ENST00000538909 HOXB1P14653 301 aaPredicted RBP7.94□□□□□ -1.14
CBX3P4-201ENST00000538909 RNF166Q96A37 237 aaPredicted RBP7.93□□□□□ -1.14
CBX3P4-201ENST00000538909 DOK7Q18PE1 504 aa7.92□□□□□ -1.14
CBX3P4-201ENST00000538909 CIZ1Q9ULV3 898 aaPredicted RBP7.92□□□□□ -1.14
CBX3P4-201ENST00000538909 VARS2Q5ST30 1063 aaKnown RBP7.91□□□□□ -1.14
CBX3P4-201ENST00000538909 RIMBP2O15034 1052 aa7.87□□□□□ -1.15
CBX3P4-201ENST00000538909 MYT1LQ9UL68 1186 aa7.87□□□□□ -1.15
CBX3P4-201ENST00000538909 EFCAB3Q8N7B9 438 aa7.84□□□□□ -1.15
CBX3P4-201ENST00000538909 SPOCK2Q92563 424 aa7.84□□□□□ -1.15
CBX3P4-201ENST00000538909 TMEM92Q6UXU6 159 aa7.82□□□□□ -1.16
CBX3P4-201ENST00000538909 IFNLR1Q8IU57 520 aaPredicted RBP7.8□□□□□ -1.16
CBX3P4-201ENST00000538909 MICALL2Q8IY33 904 aa7.8□□□□□ -1.16
CBX3P4-201ENST00000538909 ZNF687Q8N1G0 1237 aa7.8□□□□□ -1.16
CBX3P4-201ENST00000538909 ANKRD13DQ6ZTN6 518 aa7.78□□□□□ -1.16
CBX3P4-201ENST00000538909 GPR153Q6NV75 609 aa7.77□□□□□ -1.17
CBX3P4-201ENST00000538909 ZSWIM6Q9HCJ5 1215 aa7.77□□□□□ -1.17
CBX3P4-201ENST00000538909 ARSIQ5FYB1 569 aa7.76□□□□□ -1.17
CBX3P4-201ENST00000538909 KHSRPQ92945 711 aaKnown RBP eCLIP7.74□□□□□ -1.17
CBX3P4-201ENST00000538909 PTGER2P43116 358 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms