RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FAM212AQ96EL1 285 aa11.33□□□□□ -0.6
USP28-207ENST00000538475 CLCN6P51797 869 aa11.32□□□□□ -0.6
USP28-207ENST00000538475 PHF12Q96QT6 1004 aa11.32□□□□□ -0.6
USP28-207ENST00000538475 PELP1Q8IZL8 1130 aaKnown RBP11.31□□□□□ -0.6
USP28-207ENST00000538475 DCAF8Q5TAQ9 597 aa11.3□□□□□ -0.6
USP28-207ENST00000538475 SPOCK2Q92563 424 aa11.3□□□□□ -0.6
USP28-207ENST00000538475 CCDC61Q9Y6R9 512 aa11.27□□□□□ -0.61
USP28-207ENST00000538475 LHX8Q68G74 356 aa11.25□□□□□ -0.61
USP28-207ENST00000538475 GSE1Q14687 1217 aa11.23□□□□□ -0.61
USP28-207ENST00000538475 CIZ1Q9ULV3 898 aaPredicted RBP11.21□□□□□ -0.61
USP28-207ENST00000538475 GALR2O43603 387 aaPredicted RBP11.2□□□□□ -0.62
USP28-207ENST00000538475 POTEIP0CG38 1075 aa11.19□□□□□ -0.62
USP28-207ENST00000538475 KIF12Q96FN5 646 aa11.19□□□□□ -0.62
USP28-207ENST00000538475 HRCP23327 699 aa11.18□□□□□ -0.62
USP28-207ENST00000538475 DCBLD2Q96PD2 775 aa11.18□□□□□ -0.62
USP28-207ENST00000538475 MAP3K13O43283 966 aa11.16□□□□□ -0.62
USP28-207ENST00000538475 PYGBP11216 843 aa11.16□□□□□ -0.62
USP28-207ENST00000538475 MS4A3Q96HJ5 214 aa11.16□□□□□ -0.62
USP28-207ENST00000538475 PCDHB13Q9Y5F0 798 aa11.14□□□□□ -0.63
USP28-207ENST00000538475 SGIP1Q9BQI5 828 aa11.1□□□□□ -0.63
USP28-207ENST00000538475 MYT1Q01538 1121 aa11.06□□□□□ -0.64
USP28-207ENST00000538475 IFNL1Q8IU54 200 aa11.05□□□□□ -0.64
USP28-207ENST00000538475 CHRM1P11229 460 aaPredicted RBP11.04□□□□□ -0.64
USP28-207ENST00000538475 TRIM41Q8WV44 630 aa11.03□□□□□ -0.64
USP28-207ENST00000538475 ZNF467Q7Z7K2 595 aaPredicted RBP11.01□□□□□ -0.65
USP28-207ENST00000538475 PCDHB8Q9UN66 801 aa11.01□□□□□ -0.65
USP28-207ENST00000538475 TRPC6Q9Y210 931 aa11.01□□□□□ -0.65
USP28-207ENST00000538475 TIE1P35590 1138 aa10.99□□□□□ -0.65
USP28-207ENST00000538475 ATMINO43313 823 aaPredicted RBP10.98□□□□□ -0.65
USP28-207ENST00000538475 ASTLQ6HA08 431 aaPredicted RBP10.98□□□□□ -0.65
USP28-207ENST00000538475 BMP2KQ9NSY1 1161 aaPredicted RBP10.98□□□□□ -0.65
USP28-207ENST00000538475 TMEM106CQ9BVX2 250 aa10.95□□□□□ -0.66
USP28-207ENST00000538475 TTLL13PA6NNM8 815 aa10.94□□□□□ -0.66
USP28-207ENST00000538475 ATN1P54259 1190 aaPredicted RBP10.94□□□□□ -0.66
USP28-207ENST00000538475 ECM2O94769 699 aaPredicted RBP10.92□□□□□ -0.66
USP28-207ENST00000538475 SLC39A7Q92504 469 aa10.9□□□□□ -0.66
USP28-207ENST00000538475 PSEN1P49768 467 aa10.89□□□□□ -0.67
USP28-207ENST00000538475 TRIM35Q9UPQ4 493 aa10.89□□□□□ -0.67
USP28-207ENST00000538475 PDAP1Q13442 181 aaKnown RBP10.88□□□□□ -0.67
USP28-207ENST00000538475 C7P10643 843 aa10.87□□□□□ -0.67
USP28-207ENST00000538475 PKD2Q13563 968 aa10.87□□□□□ -0.67
USP28-207ENST00000538475 METRNQ9UJH8 293 aa10.87□□□□□ -0.67
USP28-207ENST00000538475 DCAF1Q9Y4B6 1507 aa10.86□□□□□ -0.67
USP28-207ENST00000538475 RIOK3O14730 519 aaKnown RBP10.86□□□□□ -0.67
USP28-207ENST00000538475 GOLGA2Q08379 1002 aa10.85□□□□□ -0.67
USP28-207ENST00000538475 POTEB2H3BUK9 544 aa10.82□□□□□ -0.68
USP28-207ENST00000538475 SEC24BO95487 1268 aa10.82□□□□□ -0.68
USP28-207ENST00000538475 RNF25Q96BH1 459 aaPredicted RBP10.82□□□□□ -0.68
USP28-207ENST00000538475 OTUD5Q96G74 571 aa10.82□□□□□ -0.68
USP28-207ENST00000538475 TAOK2Q9UL54 1235 aa10.82□□□□□ -0.68
USP28-207ENST00000538475 VGFO15240 615 aaPredicted RBP10.8□□□□□ -0.68
USP28-207ENST00000538475 IER5LQ5T953 404 aa10.8□□□□□ -0.68
USP28-207ENST00000538475 MKRN3Q13064 507 aaKnown RBP10.79□□□□□ -0.68
USP28-207ENST00000538475 CCDC180Q9P1Z9 1646 aa10.78□□□□□ -0.68
USP28-207ENST00000538475 RGL2O15211 777 aa10.77□□□□□ -0.69
USP28-207ENST00000538475 CABP2Q9NPB3 220 aa10.77□□□□□ -0.69
USP28-207ENST00000538475 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.76□□□□□ -0.69
USP28-207ENST00000538475 ZEB1P37275 1124 aaPredicted RBP10.76□□□□□ -0.69
USP28-207ENST00000538475 ZFP91Q96JP5 570 aaPredicted RBP10.76□□□□□ -0.69
USP28-207ENST00000538475 PLCG2P16885 1265 aa10.75□□□□□ -0.69
USP28-207ENST00000538475 COLQQ9Y215 455 aaPredicted RBP10.72□□□□□ -0.69
USP28-207ENST00000538475 OCEL1Q9H607 264 aa10.71□□□□□ -0.69
USP28-207ENST00000538475 POTEFA5A3E0 1075 aa10.7□□□□□ -0.7
USP28-207ENST00000538475 STK25O00506 426 aa10.69□□□□□ -0.7
USP28-207ENST00000538475 IRX5P78411 483 aaPredicted RBP10.69□□□□□ -0.7
USP28-207ENST00000538475 BCL11BQ9C0K0 894 aaPredicted RBP10.69□□□□□ -0.7
USP28-207ENST00000538475 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.69□□□□□ -0.73e-6■□□□□ 9.2
USP28-207ENST00000538475 STK24Q9Y6E0 443 aa10.69□□□□□ -0.7
USP28-207ENST00000538475 EFCAB3Q8N7B9 438 aa10.67□□□□□ -0.7
USP28-207ENST00000538475 PLSCR2Q9NRY7 297 aa10.67□□□□□ -0.7
USP28-207ENST00000538475 MAMSTRQ6ZN01 415 aa10.66□□□□□ -0.7
USP28-207ENST00000538475 PCGF6Q9BYE7 350 aa10.66□□□□□ -0.7
USP28-207ENST00000538475 MYO15BQ96JP2 1530 aa10.65□□□□□ -0.7
USP28-207ENST00000538475 DCAF8L2P0C7V8 631 aa10.64□□□□□ -0.71
USP28-207ENST00000538475 AMER1Q5JTC6 1135 aaPredicted RBP10.64□□□□□ -0.71
USP28-207ENST00000538475 POTEJP0CG39 1038 aa10.63□□□□□ -0.71
USP28-207ENST00000538475 SCUBE2Q9NQ36 999 aa10.63□□□□□ -0.71
USP28-207ENST00000538475 POTEMA6NI47 508 aa10.62□□□□□ -0.71
USP28-207ENST00000538475 SOX12O15370 315 aa10.6□□□□□ -0.71
USP28-207ENST00000538475 PDCD7Q8N8D1 485 aaKnown RBP10.6□□□□□ -0.71
USP28-207ENST00000538475 ZCCHC6Q5VYS8 1495 aaKnown RBP10.6□□□□□ -0.71
USP28-207ENST00000538475 TRIM26Q12899 539 aaPredicted RBP10.59□□□□□ -0.71
USP28-207ENST00000538475 CHGAP10645 457 aaKnown RBP10.58□□□□□ -0.72
USP28-207ENST00000538475 POTEGQ6S5H5 508 aa10.58□□□□□ -0.72
USP28-207ENST00000538475 L3MBTL3Q96JM7 780 aaPredicted RBP10.58□□□□□ -0.72
USP28-207ENST00000538475 G3V3G9 751 aa10.57□□□□□ -0.72
USP28-207ENST00000538475 RTN4Q9NQC3 1192 aaKnown RBP10.56□□□□□ -0.72
USP28-207ENST00000538475 ILDR1Q86SU0 546 aaPredicted RBP10.55□□□□□ -0.72
USP28-207ENST00000538475 PHF8Q9UPP1 1060 aa10.55□□□□□ -0.72
USP28-207ENST00000538475 SUPT5HO00267 1087 aaKnown RBP10.54□□□□□ -0.72
USP28-207ENST00000538475 NLRP6P59044 892 aa10.54□□□□□ -0.72
USP28-207ENST00000538475 DPY19L2Q6NUT2 758 aa10.54□□□□□ -0.72
USP28-207ENST00000538475 HS6ST3Q8IZP7 471 aa10.54□□□□□ -0.72
USP28-207ENST00000538475 PPARGC1BQ86YN6 1023 aaKnown RBP10.53□□□□□ -0.72
USP28-207ENST00000538475 C3orf67Q6ZVT6 689 aa10.52□□□□□ -0.73
USP28-207ENST00000538475 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.51□□□□□ -0.73
USP28-207ENST00000538475 BOLA1Q9Y3E2 137 aa10.5□□□□□ -0.73
USP28-207ENST00000538475 TTBK1Q5TCY1 1321 aaPredicted RBP10.49□□□□□ -0.73
USP28-207ENST00000538475 SLAIN1Q8ND83 568 aa10.48□□□□□ -0.73
USP28-207ENST00000538475 MFRPQ9BY79 579 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms