RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 SPRYD3Q8NCJ5 442 aa12.58□□□□□ -0.4
PRKDC-208ENST00000536710 MNX1P50219 401 aaPredicted RBP12.56□□□□□ -0.4
PRKDC-208ENST00000536710 VSIG10Q8N0Z9 540 aa12.56□□□□□ -0.4
PRKDC-208ENST00000536710 RNF25Q96BH1 459 aaPredicted RBP12.53□□□□□ -0.4
PRKDC-208ENST00000536710 RASEFQ8IZ41 740 aa12.51□□□□□ -0.41
PRKDC-208ENST00000536710 TAOK2Q9UL54 1235 aa12.51□□□□□ -0.41
PRKDC-208ENST00000536710 RIOK3O14730 519 aaKnown RBP12.5□□□□□ -0.41
PRKDC-208ENST00000536710 HS6ST3Q8IZP7 471 aa12.5□□□□□ -0.41
PRKDC-208ENST00000536710 CHADLQ6NUI6 762 aa12.44□□□□□ -0.42
PRKDC-208ENST00000536710 PYGBP11216 843 aa12.42□□□□□ -0.42
PRKDC-208ENST00000536710 TSHZ2Q9NRE2 1034 aa12.42□□□□□ -0.42
PRKDC-208ENST00000536710 KDM2AQ9Y2K7 1162 aa12.42□□□□□ -0.42
PRKDC-208ENST00000536710 STK25O00506 426 aa12.41□□□□□ -0.42
PRKDC-208ENST00000536710 VGFO15240 615 aaPredicted RBP12.41□□□□□ -0.42
PRKDC-208ENST00000536710 CHRM1P11229 460 aaPredicted RBP12.41□□□□□ -0.42
PRKDC-208ENST00000536710 BCANQ96GW7 911 aa12.41□□□□□ -0.42
PRKDC-208ENST00000536710 TSPYL2Q9H2G4 693 aaPredicted RBP12.37□□□□□ -0.43
PRKDC-208ENST00000536710 FARP1Q9Y4F1 1045 aaPredicted RBP12.34□□□□□ -0.43
PRKDC-208ENST00000536710 DNAJC5Q9H3Z4 198 aa12.33□□□□□ -0.44
PRKDC-208ENST00000536710 STK24Q9Y6E0 443 aa12.33□□□□□ -0.44
PRKDC-208ENST00000536710 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.32□□□□□ -0.44
PRKDC-208ENST00000536710 PRKAR2AP13861 404 aaKnown RBP12.32□□□□□ -0.44
PRKDC-208ENST00000536710 NKX1-1Q15270 411 aaPredicted RBP12.32□□□□□ -0.44
PRKDC-208ENST00000536710 ZFP91Q96JP5 570 aaPredicted RBP12.32□□□□□ -0.44
PRKDC-208ENST00000536710 BCL11BQ9C0K0 894 aaPredicted RBP12.31□□□□□ -0.44
PRKDC-208ENST00000536710 SGIP1Q9BQI5 828 aa12.27□□□□□ -0.45
PRKDC-208ENST00000536710 GTPBP6O43824 516 aaPredicted RBP12.25□□□□□ -0.45
PRKDC-208ENST00000536710 ZNF467Q7Z7K2 595 aaPredicted RBP12.23□□□□□ -0.45
PRKDC-208ENST00000536710 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.453e-13■■■■■ 58.2
PRKDC-208ENST00000536710 RYDENQ9NUL5 291 aaKnown RBP12.2□□□□□ -0.46
PRKDC-208ENST00000536710 PAK3O75914 559 aaPredicted RBP12.19□□□□□ -0.46
PRKDC-208ENST00000536710 CHRDL2Q6WN34 429 aa12.18□□□□□ -0.46
PRKDC-208ENST00000536710 PCDHB8Q9UN66 801 aa12.17□□□□□ -0.46
PRKDC-208ENST00000536710 PCDHB13Q9Y5F0 798 aa12.17□□□□□ -0.46
PRKDC-208ENST00000536710 PDAP1Q13442 181 aaKnown RBP12.16□□□□□ -0.46
PRKDC-208ENST00000536710 CCDC61Q9Y6R9 512 aa12.16□□□□□ -0.46
PRKDC-208ENST00000536710 PIP4P2Q8N4L2 257 aa12.13□□□□□ -0.47
PRKDC-208ENST00000536710 PRKCSHP14314 528 aaPredicted RBP12.11□□□□□ -0.47
PRKDC-208ENST00000536710 PSEN1P49768 467 aa12.1□□□□□ -0.47
PRKDC-208ENST00000536710 NBR1Q14596 966 aa12.1□□□□□ -0.47
PRKDC-208ENST00000536710 ZNF579Q8NAF0 562 aaKnown RBP12.1□□□□□ -0.47
PRKDC-208ENST00000536710 TPRNQ4KMQ1 711 aa12.05□□□□□ -0.48
PRKDC-208ENST00000536710 MAP3K13O43283 966 aa12.04□□□□□ -0.48
PRKDC-208ENST00000536710 IFNL1Q8IU54 200 aa12.04□□□□□ -0.48
PRKDC-208ENST00000536710 KIF12Q96FN5 646 aa12.02□□□□□ -0.49
PRKDC-208ENST00000536710 ZRANB1Q9UGI0 708 aa12.02□□□□□ -0.49
PRKDC-208ENST00000536710 CD44P16070 742 aaKnown RBP12□□□□□ -0.49
PRKDC-208ENST00000536710 MFRPQ9BY79 579 aa11.97□□□□□ -0.49
PRKDC-208ENST00000536710 CABP2Q9NPB3 220 aa11.97□□□□□ -0.49
PRKDC-208ENST00000536710 EFCAB3Q8N7B9 438 aa11.94□□□□□ -0.5
PRKDC-208ENST00000536710 PHF12Q96QT6 1004 aa11.94□□□□□ -0.5
PRKDC-208ENST00000536710 WDR70Q9NW82 654 aa11.93□□□□□ -0.5
PRKDC-208ENST00000536710 CADPS2Q86UW7 1296 aa11.91□□□□□ -0.5
PRKDC-208ENST00000536710 NLRP6P59044 892 aa11.9□□□□□ -0.5
PRKDC-208ENST00000536710 SOX12O15370 315 aa11.89□□□□□ -0.51
PRKDC-208ENST00000536710 PHF8Q9UPP1 1060 aa11.89□□□□□ -0.51
PRKDC-208ENST00000536710 P3H3Q8IVL6 736 aa11.88□□□□□ -0.51
PRKDC-208ENST00000536710 GOLGA2Q08379 1002 aa11.86□□□□□ -0.51
PRKDC-208ENST00000536710 PPP1R37O75864 691 aa11.85□□□□□ -0.51
PRKDC-208ENST00000536710 FBXO22Q8NEZ5 403 aa11.84□□□□□ -0.51
PRKDC-208ENST00000536710 TMEM106CQ9BVX2 250 aa11.83□□□□□ -0.52
PRKDC-208ENST00000536710 MS4A3Q96HJ5 214 aa11.8□□□□□ -0.52
PRKDC-208ENST00000536710 KCNV2Q8TDN2 545 aa11.79□□□□□ -0.52
PRKDC-208ENST00000536710 C19orf67A6NJJ6 358 aa11.78□□□□□ -0.52
PRKDC-208ENST00000536710 MKRN3Q13064 507 aaKnown RBP11.77□□□□□ -0.53
PRKDC-208ENST00000536710 TRPC6Q9Y210 931 aa11.77□□□□□ -0.53
PRKDC-208ENST00000536710 MS4A4AQ96JQ5 239 aa11.72□□□□□ -0.53
PRKDC-208ENST00000536710 E2F4Q16254 413 aa11.69□□□□□ -0.54
PRKDC-208ENST00000536710 TIE1P35590 1138 aa11.68□□□□□ -0.54
PRKDC-208ENST00000536710 LARP6Q9BRS8 491 aaKnown RBP11.67□□□□□ -0.54
PRKDC-208ENST00000536710 TTLL13PA6NNM8 815 aa11.66□□□□□ -0.54
PRKDC-208ENST00000536710 HAX1O00165 279 aa11.66□□□□□ -0.54
PRKDC-208ENST00000536710 PDE4AP27815 886 aa11.66□□□□□ -0.54
PRKDC-208ENST00000536710 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.65□□□□□ -0.54
PRKDC-208ENST00000536710 NCKAP5LQ9HCH0 1330 aa11.64□□□□□ -0.55
PRKDC-208ENST00000536710 ARHGEF1Q92888 912 aaKnown RBP11.64□□□□□ -0.55
PRKDC-208ENST00000536710 TULP1O00294 542 aaPredicted RBP11.63□□□□□ -0.55
PRKDC-208ENST00000536710 BMP2KQ9NSY1 1161 aaPredicted RBP11.63□□□□□ -0.55
PRKDC-208ENST00000536710 GALR2O43603 387 aaPredicted RBP11.62□□□□□ -0.55
PRKDC-208ENST00000536710 TRIM35Q9UPQ4 493 aa11.61□□□□□ -0.55
PRKDC-208ENST00000536710 LMOD2Q6P5Q4 547 aa11.6□□□□□ -0.55
PRKDC-208ENST00000536710 DDX27Q96GQ7 796 aaKnown RBP11.6□□□□□ -0.55
PRKDC-208ENST00000536710 CRISPLD2Q9H0B8 497 aa11.58□□□□□ -0.56
PRKDC-208ENST00000536710 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.57□□□□□ -0.56
PRKDC-208ENST00000536710 MFSD10Q14728 455 aa11.56□□□□□ -0.56
PRKDC-208ENST00000536710 SEMA3EO15041 775 aa11.54□□□□□ -0.56
PRKDC-208ENST00000536710 CLCN6P51797 869 aa11.53□□□□□ -0.56
PRKDC-208ENST00000536710 EVX2Q03828 476 aa11.53□□□□□ -0.56
PRKDC-208ENST00000536710 DPY19L2Q6NUT2 758 aa11.51□□□□□ -0.57
PRKDC-208ENST00000536710 ILDR1Q86SU0 546 aaPredicted RBP11.51□□□□□ -0.57
PRKDC-208ENST00000536710 ATN1P54259 1190 aaPredicted RBP11.49□□□□□ -0.57
PRKDC-208ENST00000536710 PPP1R15BQ5SWA1 713 aa11.49□□□□□ -0.57
PRKDC-208ENST00000536710 TESPA1A2RU30 521 aaPredicted RBP11.48□□□□□ -0.57
PRKDC-208ENST00000536710 GPHNQ9NQX3 736 aaPredicted RBP11.48□□□□□ -0.57
PRKDC-208ENST00000536710 G3V3G9 751 aa11.46□□□□□ -0.57
PRKDC-208ENST00000536710 MICALL2Q8IY33 904 aa11.46□□□□□ -0.57
PRKDC-208ENST00000536710 ATMINO43313 823 aaPredicted RBP11.45□□□□□ -0.58
PRKDC-208ENST00000536710 CAMK2BQ13554 666 aa11.45□□□□□ -0.58
PRKDC-208ENST00000536710 SMYD5Q6GMV2 418 aa11.45□□□□□ -0.58
PRKDC-208ENST00000536710 TMC2Q8TDI7 906 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms