RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-205ENST00000536107 PCDH10Q9P2E7 1040 aa12.36□□□□□ -0.43
YBX3-205ENST00000536107 C7P10643 843 aa12.35□□□□□ -0.43
YBX3-205ENST00000536107 MS4A3Q96HJ5 214 aa12.35□□□□□ -0.43
YBX3-205ENST00000536107 ATMINO43313 823 aaPredicted RBP12.34□□□□□ -0.43
YBX3-205ENST00000536107 POTEJP0CG39 1038 aa12.31□□□□□ -0.44
YBX3-205ENST00000536107 MAMSTRQ6ZN01 415 aa12.31□□□□□ -0.44
YBX3-205ENST00000536107 LCE2DQ5TA82 110 aaPredicted RBP12.2□□□□□ -0.46
YBX3-205ENST00000536107 SCUBE2Q9NQ36 999 aa12.2□□□□□ -0.46
YBX3-205ENST00000536107 CCDC61Q9Y6R9 512 aa12.2□□□□□ -0.46
YBX3-205ENST00000536107 ATN1P54259 1190 aaPredicted RBP12.19□□□□□ -0.46
YBX3-205ENST00000536107 TSPYL2Q9H2G4 693 aaPredicted RBP12.18□□□□□ -0.46
YBX3-205ENST00000536107 KIF12Q96FN5 646 aa12.15□□□□□ -0.46
YBX3-205ENST00000536107 FAM163AQ96GL9 167 aaPredicted RBP12.14□□□□□ -0.47
YBX3-205ENST00000536107 PROM2Q8N271 834 aa12.12□□□□□ -0.47
YBX3-205ENST00000536107 POTEFA5A3E0 1075 aa12.11□□□□□ -0.47
YBX3-205ENST00000536107 BMP2KQ9NSY1 1161 aaPredicted RBP12.1□□□□□ -0.47
YBX3-205ENST00000536107 TIE1P35590 1138 aa12.08□□□□□ -0.48
YBX3-205ENST00000536107 TRPC6Q9Y210 931 aa12.05□□□□□ -0.48
YBX3-205ENST00000536107 MAP3K13O43283 966 aa12.03□□□□□ -0.48
YBX3-205ENST00000536107 EHMT2Q96KQ7 1210 aa12□□□□□ -0.49
YBX3-205ENST00000536107 PLEKHG5O94827 1062 aa11.98□□□□□ -0.49
YBX3-205ENST00000536107 TTLL13PA6NNM8 815 aa11.97□□□□□ -0.49
YBX3-205ENST00000536107 SEC24BO95487 1268 aa11.97□□□□□ -0.49
YBX3-205ENST00000536107 COLQQ9Y215 455 aaPredicted RBP11.97□□□□□ -0.49
YBX3-205ENST00000536107 RASEFQ8IZ41 740 aa11.96□□□□□ -0.49
YBX3-205ENST00000536107 IER5LQ5T953 404 aa11.94□□□□□ -0.5
YBX3-205ENST00000536107 CDAN1Q8IWY9 1227 aa11.92□□□□□ -0.5
YBX3-205ENST00000536107 MIER1Q8N108 512 aa11.92□□□□□ -0.5
YBX3-205ENST00000536107 SGIP1Q9BQI5 828 aa11.92□□□□□ -0.5
YBX3-205ENST00000536107 TRIM35Q9UPQ4 493 aa11.89□□□□□ -0.51
YBX3-205ENST00000536107 PCDHB13Q9Y5F0 798 aa11.85□□□□□ -0.51
YBX3-205ENST00000536107 ST18O60284 1047 aa11.82□□□□□ -0.52
YBX3-205ENST00000536107 SLAIN1Q8ND83 568 aa11.82□□□□□ -0.52
YBX3-205ENST00000536107 PLCD3Q8N3E9 789 aa11.77□□□□□ -0.53
YBX3-205ENST00000536107 ZBTB47Q9UFB7 747 aaPredicted RBP11.77□□□□□ -0.53
YBX3-205ENST00000536107 NUBP1P53384 320 aa11.76□□□□□ -0.53
YBX3-205ENST00000536107 IFNL1Q8IU54 200 aa11.76□□□□□ -0.53
YBX3-205ENST00000536107 PLCG2P16885 1265 aa11.75□□□□□ -0.53
YBX3-205ENST00000536107 TMEM106CQ9BVX2 250 aa11.74□□□□□ -0.53
YBX3-205ENST00000536107 IRX5P78411 483 aaPredicted RBP11.71□□□□□ -0.53
YBX3-205ENST00000536107 TMEM121BQ9BXQ6 578 aaPredicted RBP11.7□□□□□ -0.54
YBX3-205ENST00000536107 FAM212AQ96EL1 285 aa11.69□□□□□ -0.54
YBX3-205ENST00000536107 MMRN1Q13201 1228 aa11.67□□□□□ -0.54
YBX3-205ENST00000536107 SPNS2Q8IVW8 549 aa11.65□□□□□ -0.54
YBX3-205ENST00000536107 OCEL1Q9H607 264 aa11.65□□□□□ -0.54
YBX3-205ENST00000536107 SNPHO15079 494 aa11.64□□□□□ -0.55
YBX3-205ENST00000536107 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.6□□□□□ -0.55
YBX3-205ENST00000536107 MARVELD3Q96A59 401 aa11.54□□□□□ -0.56
YBX3-205ENST00000536107 PYGBP11216 843 aa11.51□□□□□ -0.57
YBX3-205ENST00000536107 DCAF8Q5TAQ9 597 aa11.5□□□□□ -0.57
YBX3-205ENST00000536107 PCDHB8Q9UN66 801 aa11.48□□□□□ -0.57
YBX3-205ENST00000536107 PDCD7Q8N8D1 485 aaKnown RBP11.46□□□□□ -0.57
YBX3-205ENST00000536107 EMP3P54852 163 aa11.44□□□□□ -0.58
YBX3-205ENST00000536107 C3orf67Q6ZVT6 689 aa11.44□□□□□ -0.58
YBX3-205ENST00000536107 L3MBTL3Q96JM7 780 aaPredicted RBP11.44□□□□□ -0.58
YBX3-205ENST00000536107 ZNF467Q7Z7K2 595 aaPredicted RBP11.39□□□□□ -0.59
YBX3-205ENST00000536107 KRTAP3-3Q9BYR6 98 aa11.39□□□□□ -0.59
YBX3-205ENST00000536107 KRTAP3-2Q9BYR7 98 aa11.39□□□□□ -0.59
YBX3-205ENST00000536107 MKRN3Q13064 507 aaKnown RBP11.38□□□□□ -0.59
YBX3-205ENST00000536107 HS3ST6Q96QI5 342 aa11.38□□□□□ -0.59
YBX3-205ENST00000536107 POTEB3A0JP26 581 aa11.37□□□□□ -0.59
YBX3-205ENST00000536107 GOLGA2Q08379 1002 aa11.37□□□□□ -0.59
YBX3-205ENST00000536107 POTEBQ6S5H4 581 aa11.37□□□□□ -0.59
YBX3-205ENST00000536107 FAM205CA6NFA0 338 aa11.35□□□□□ -0.59
YBX3-205ENST00000536107 FKBP8Q14318 412 aa11.33□□□□□ -0.6
YBX3-205ENST00000536107 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.33□□□□□ -0.65e-6■■□□□ 13.1
YBX3-205ENST00000536107 GSE1Q14687 1217 aa11.32□□□□□ -0.6
YBX3-205ENST00000536107 CHRM1P11229 460 aaPredicted RBP11.3□□□□□ -0.6
YBX3-205ENST00000536107 ILDR1Q86SU0 546 aaPredicted RBP11.3□□□□□ -0.6
YBX3-205ENST00000536107 FBXO3Q9UK99 471 aa11.3□□□□□ -0.6
YBX3-205ENST00000536107 PSEN1P49768 467 aa11.27□□□□□ -0.61
YBX3-205ENST00000536107 HOXB3P14651 431 aaPredicted RBP11.22□□□□□ -0.61
YBX3-205ENST00000536107 DPY19L2Q6NUT2 758 aa11.2□□□□□ -0.62
YBX3-205ENST00000536107 KLHL34Q8N239 644 aa11.2□□□□□ -0.62
YBX3-205ENST00000536107 HOXB1P14653 301 aaPredicted RBP11.19□□□□□ -0.62
YBX3-205ENST00000536107 PDAP1Q13442 181 aaKnown RBP11.19□□□□□ -0.62
YBX3-205ENST00000536107 BOLA1Q9Y3E2 137 aa11.18□□□□□ -0.62
YBX3-205ENST00000536107 G3V3G9 751 aa11.17□□□□□ -0.62
YBX3-205ENST00000536107 ZNF710Q8N1W2 664 aa11.15□□□□□ -0.62
YBX3-205ENST00000536107 VASPP50552 380 aaPredicted RBP11.14□□□□□ -0.63
YBX3-205ENST00000536107 DOK7Q18PE1 504 aa11.14□□□□□ -0.63
YBX3-205ENST00000536107 ERBB3P21860 1342 aa11.13□□□□□ -0.63
YBX3-205ENST00000536107 CABP2Q9NPB3 220 aa11.12□□□□□ -0.63
YBX3-205ENST00000536107 RNF166Q96A37 237 aaPredicted RBP11.11□□□□□ -0.63
YBX3-205ENST00000536107 RIMBP2O15034 1052 aa11.07□□□□□ -0.64
YBX3-205ENST00000536107 VARS2Q5ST30 1063 aaKnown RBP11.04□□□□□ -0.64
YBX3-205ENST00000536107 MYT1LQ9UL68 1186 aa11.04□□□□□ -0.64
YBX3-205ENST00000536107 ZSWIM6Q9HCJ5 1215 aa11.02□□□□□ -0.65
YBX3-205ENST00000536107 ZNF687Q8N1G0 1237 aa11.01□□□□□ -0.65
YBX3-205ENST00000536107 PTGER2P43116 358 aa10.98□□□□□ -0.65
YBX3-205ENST00000536107 SPOCK2Q92563 424 aa10.98□□□□□ -0.65
YBX3-205ENST00000536107 CIZ1Q9ULV3 898 aaPredicted RBP10.97□□□□□ -0.65
YBX3-205ENST00000536107 GPR153Q6NV75 609 aa10.94□□□□□ -0.66
YBX3-205ENST00000536107 EFCAB3Q8N7B9 438 aa10.94□□□□□ -0.66
YBX3-205ENST00000536107 TMEM92Q6UXU6 159 aa10.93□□□□□ -0.66
YBX3-205ENST00000536107 MICALL2Q8IY33 904 aa10.93□□□□□ -0.66
YBX3-205ENST00000536107 IFNLR1Q8IU57 520 aaPredicted RBP10.9□□□□□ -0.66
YBX3-205ENST00000536107 TRIM41Q8WV44 630 aa10.87□□□□□ -0.67
YBX3-205ENST00000536107 SOX12O15370 315 aa10.84□□□□□ -0.67
YBX3-205ENST00000536107 ANKRD13DQ6ZTN6 518 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms