RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 SPOCK2Q92563 424 aa13.15□□□□□ -0.3
C11orf88-204ENST00000529661 CCDC61Q9Y6R9 512 aa13.11□□□□□ -0.31
C11orf88-204ENST00000529661 CLCN6P51797 869 aa13.1□□□□□ -0.31
C11orf88-204ENST00000529661 FAM212AQ96EL1 285 aa13.09□□□□□ -0.31
C11orf88-204ENST00000529661 GALR2O43603 387 aaPredicted RBP13.08□□□□□ -0.32
C11orf88-204ENST00000529661 DCAF8Q5TAQ9 597 aa13.07□□□□□ -0.32
C11orf88-204ENST00000529661 CIZ1Q9ULV3 898 aaPredicted RBP13.02□□□□□ -0.33
C11orf88-204ENST00000529661 POTEIP0CG38 1075 aa13.01□□□□□ -0.33
C11orf88-204ENST00000529661 MS4A3Q96HJ5 214 aa13.01□□□□□ -0.33
C11orf88-204ENST00000529661 KIF12Q96FN5 646 aa13□□□□□ -0.33
C11orf88-204ENST00000529661 GSE1Q14687 1217 aa12.99□□□□□ -0.33
C11orf88-204ENST00000529661 MAP3K13O43283 966 aa12.94□□□□□ -0.34
C11orf88-204ENST00000529661 DCBLD2Q96PD2 775 aa12.94□□□□□ -0.34
C11orf88-204ENST00000529661 PYGBP11216 843 aa12.92□□□□□ -0.34
C11orf88-204ENST00000529661 TRPC6Q9Y210 931 aa12.87□□□□□ -0.35
C11orf88-204ENST00000529661 PCDHB13Q9Y5F0 798 aa12.85□□□□□ -0.35
C11orf88-204ENST00000529661 SGIP1Q9BQI5 828 aa12.84□□□□□ -0.35
C11orf88-204ENST00000529661 ASTLQ6HA08 431 aaPredicted RBP12.81□□□□□ -0.36
C11orf88-204ENST00000529661 IFNL1Q8IU54 200 aa12.81□□□□□ -0.36
C11orf88-204ENST00000529661 ATMINO43313 823 aaPredicted RBP12.8□□□□□ -0.36
C11orf88-204ENST00000529661 PELP1Q8IZL8 1130 aaKnown RBP12.8□□□□□ -0.36
C11orf88-204ENST00000529661 TRIM41Q8WV44 630 aa12.8□□□□□ -0.36
C11orf88-204ENST00000529661 BMP2KQ9NSY1 1161 aaPredicted RBP12.79□□□□□ -0.36
C11orf88-204ENST00000529661 CHRM1P11229 460 aaPredicted RBP12.78□□□□□ -0.36
C11orf88-204ENST00000529661 PKD2Q13563 968 aa12.78□□□□□ -0.36
C11orf88-204ENST00000529661 ECM2O94769 699 aaPredicted RBP12.76□□□□□ -0.37
C11orf88-204ENST00000529661 TIE1P35590 1138 aa12.76□□□□□ -0.37
C11orf88-204ENST00000529661 ATN1P54259 1190 aaPredicted RBP12.75□□□□□ -0.37
C11orf88-204ENST00000529661 PCDHB8Q9UN66 801 aa12.75□□□□□ -0.37
C11orf88-204ENST00000529661 TTLL13PA6NNM8 815 aa12.72□□□□□ -0.37
C11orf88-204ENST00000529661 ZNF467Q7Z7K2 595 aaPredicted RBP12.71□□□□□ -0.37
C11orf88-204ENST00000529661 LHX8Q68G74 356 aa12.68□□□□□ -0.38
C11orf88-204ENST00000529661 RNF25Q96BH1 459 aaPredicted RBP12.66□□□□□ -0.38
C11orf88-204ENST00000529661 TMEM106CQ9BVX2 250 aa12.66□□□□□ -0.38
C11orf88-204ENST00000529661 METRNQ9UJH8 293 aa12.66□□□□□ -0.38
C11orf88-204ENST00000529661 AMER1Q5JTC6 1135 aaPredicted RBP12.65□□□□□ -0.38
C11orf88-204ENST00000529661 SLC39A7Q92504 469 aa12.65□□□□□ -0.38
C11orf88-204ENST00000529661 RIOK3O14730 519 aaKnown RBP12.63□□□□□ -0.39
C11orf88-204ENST00000529661 RTN4Q9NQC3 1192 aaKnown RBP12.63□□□□□ -0.39
C11orf88-204ENST00000529661 TRIM35Q9UPQ4 493 aa12.63□□□□□ -0.39
C11orf88-204ENST00000529661 RGL2O15211 777 aa12.62□□□□□ -0.39
C11orf88-204ENST00000529661 C7P10643 843 aa12.61□□□□□ -0.39
C11orf88-204ENST00000529661 POTEB2H3BUK9 544 aa12.6□□□□□ -0.39
C11orf88-204ENST00000529661 PSEN1P49768 467 aa12.6□□□□□ -0.39
C11orf88-204ENST00000529661 PDAP1Q13442 181 aaKnown RBP12.59□□□□□ -0.39
C11orf88-204ENST00000529661 POTEFA5A3E0 1075 aa12.57□□□□□ -0.4
C11orf88-204ENST00000529661 VGFO15240 615 aaPredicted RBP12.55□□□□□ -0.4
C11orf88-204ENST00000529661 IER5LQ5T953 404 aa12.53□□□□□ -0.4
C11orf88-204ENST00000529661 TAOK2Q9UL54 1235 aa12.53□□□□□ -0.4
C11orf88-204ENST00000529661 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.52□□□□□ -0.41
C11orf88-204ENST00000529661 ZFP91Q96JP5 570 aaPredicted RBP12.52□□□□□ -0.41
C11orf88-204ENST00000529661 COLQQ9Y215 455 aaPredicted RBP12.52□□□□□ -0.41
C11orf88-204ENST00000529661 DCAF8L2P0C7V8 631 aa12.5□□□□□ -0.41
C11orf88-204ENST00000529661 POTEJP0CG39 1038 aa12.49□□□□□ -0.41
C11orf88-204ENST00000529661 GOLGA2Q08379 1002 aa12.48□□□□□ -0.41
C11orf88-204ENST00000529661 CABP2Q9NPB3 220 aa12.46□□□□□ -0.41
C11orf88-204ENST00000529661 STK25O00506 426 aa12.45□□□□□ -0.42
C11orf88-204ENST00000529661 SEC24BO95487 1268 aa12.45□□□□□ -0.42
C11orf88-204ENST00000529661 IRX5P78411 483 aaPredicted RBP12.45□□□□□ -0.42
C11orf88-204ENST00000529661 OTUD5Q96G74 571 aa12.45□□□□□ -0.42
C11orf88-204ENST00000529661 BCL11BQ9C0K0 894 aaPredicted RBP12.44□□□□□ -0.42
C11orf88-204ENST00000529661 STK24Q9Y6E0 443 aa12.43□□□□□ -0.42
C11orf88-204ENST00000529661 PLCG2P16885 1265 aa12.41□□□□□ -0.42
C11orf88-204ENST00000529661 MKRN3Q13064 507 aaKnown RBP12.41□□□□□ -0.42
C11orf88-204ENST00000529661 CHGAP10645 457 aaKnown RBP12.39□□□□□ -0.43
C11orf88-204ENST00000529661 OCEL1Q9H607 264 aa12.37□□□□□ -0.43
C11orf88-204ENST00000529661 EFCAB3Q8N7B9 438 aa12.36□□□□□ -0.43
C11orf88-204ENST00000529661 PDCD7Q8N8D1 485 aaKnown RBP12.35□□□□□ -0.43
C11orf88-204ENST00000529661 HS6ST3Q8IZP7 471 aa12.34□□□□□ -0.43
C11orf88-204ENST00000529661 MAMSTRQ6ZN01 415 aa12.32□□□□□ -0.44
C11orf88-204ENST00000529661 ILDR1Q86SU0 546 aaPredicted RBP12.32□□□□□ -0.44
C11orf88-204ENST00000529661 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.32□□□□□ -0.44
C11orf88-204ENST00000529661 SCUBE2Q9NQ36 999 aa12.3□□□□□ -0.44
C11orf88-204ENST00000529661 SOX12O15370 315 aa12.25□□□□□ -0.45
C11orf88-204ENST00000529661 PHF8Q9UPP1 1060 aa12.25□□□□□ -0.45
C11orf88-204ENST00000529661 DPY19L2Q6NUT2 758 aa12.23□□□□□ -0.45
C11orf88-204ENST00000529661 MFRPQ9BY79 579 aa12.21□□□□□ -0.45
C11orf88-204ENST00000529661 NLRP6P59044 892 aa12.2□□□□□ -0.46
C11orf88-204ENST00000529661 NKX1-1Q15270 411 aaPredicted RBP12.17□□□□□ -0.46
C11orf88-204ENST00000529661 L3MBTL3Q96JM7 780 aaPredicted RBP12.17□□□□□ -0.46
C11orf88-204ENST00000529661 MS4A4AQ96JQ5 239 aa12.17□□□□□ -0.46
C11orf88-204ENST00000529661 FBXO22Q8NEZ5 403 aa12.16□□□□□ -0.46
C11orf88-204ENST00000529661 SLAIN1Q8ND83 568 aa12.15□□□□□ -0.46
C11orf88-204ENST00000529661 DNAJC5Q9H3Z4 198 aa12.15□□□□□ -0.46
C11orf88-204ENST00000529661 G3V3G9 751 aa12.13□□□□□ -0.47
C11orf88-204ENST00000529661 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.12□□□□□ -0.47
C11orf88-204ENST00000529661 BOLA1Q9Y3E2 137 aa12.12□□□□□ -0.47
C11orf88-204ENST00000529661 C3orf67Q6ZVT6 689 aa12.11□□□□□ -0.47
C11orf88-204ENST00000529661 BBXQ8WY36 941 aaPredicted RBP12.1□□□□□ -0.47
C11orf88-204ENST00000529661 TMEM121BQ9BXQ6 578 aaPredicted RBP12.08□□□□□ -0.48
C11orf88-204ENST00000529661 RYDENQ9NUL5 291 aaKnown RBP12.07□□□□□ -0.48
C11orf88-204ENST00000529661 LCE2DQ5TA82 110 aaPredicted RBP12.06□□□□□ -0.48
C11orf88-204ENST00000529661 MICALL2Q8IY33 904 aa12.05□□□□□ -0.48
C11orf88-204ENST00000529661 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.05□□□□□ -0.48
C11orf88-204ENST00000529661 GTPBP6O43824 516 aaPredicted RBP12.04□□□□□ -0.48
C11orf88-204ENST00000529661 PPP1R37O75864 691 aa12.04□□□□□ -0.48
C11orf88-204ENST00000529661 FAM163AQ96GL9 167 aaPredicted RBP12□□□□□ -0.49
C11orf88-204ENST00000529661 TMEM92Q6UXU6 159 aa11.96□□□□□ -0.49
C11orf88-204ENST00000529661 PAXIP1Q6ZW49 1069 aaPredicted RBP11.96□□□□□ -0.49
C11orf88-204ENST00000529661 SPRYD3Q8NCJ5 442 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms