RNA–Protein interactions for RNA: ENST00000529355.1

CTR9-204, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene CTR9, Length 1,146 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-204ENST00000529355 MNX1P50219 401 aaPredicted RBP13.1□□□□□ -0.31
CTR9-204ENST00000529355 AMER1Q5JTC6 1135 aaPredicted RBP13.07□□□□□ -0.32
CTR9-204ENST00000529355 SPOCK2Q92563 424 aa13.05□□□□□ -0.32
CTR9-204ENST00000529355 POTEB2H3BUK9 544 aa13.03□□□□□ -0.32
CTR9-204ENST00000529355 ZRANB1Q9UGI0 708 aa13.02□□□□□ -0.33
CTR9-204ENST00000529355 PLEKHG5O94827 1062 aa13.01□□□□□ -0.33
CTR9-204ENST00000529355 NUBP1P53384 320 aa12.97□□□□□ -0.33
CTR9-204ENST00000529355 GALR2O43603 387 aaPredicted RBP12.96□□□□□ -0.33
CTR9-204ENST00000529355 PKD2Q13563 968 aa12.96□□□□□ -0.33
CTR9-204ENST00000529355 ZBTB47Q9UFB7 747 aaPredicted RBP12.93□□□□□ -0.34
CTR9-204ENST00000529355 RASEFQ8IZ41 740 aa12.91□□□□□ -0.34
CTR9-204ENST00000529355 CIZ1Q9ULV3 898 aaPredicted RBP12.88□□□□□ -0.35
CTR9-204ENST00000529355 MAMSTRQ6ZN01 415 aa12.87□□□□□ -0.35
CTR9-204ENST00000529355 PAK3O75914 559 aaPredicted RBP12.82□□□□□ -0.36
CTR9-204ENST00000529355 NPM1P06748 294 aaKnown RBP eCLIP12.82□□□□□ -0.36
CTR9-204ENST00000529355 DCAF8Q5TAQ9 597 aa12.82□□□□□ -0.36
CTR9-204ENST00000529355 TSPYL2Q9H2G4 693 aaPredicted RBP12.78□□□□□ -0.36
CTR9-204ENST00000529355 ECM2O94769 699 aaPredicted RBP12.77□□□□□ -0.37
CTR9-204ENST00000529355 METRNQ9UJH8 293 aa12.77□□□□□ -0.37
CTR9-204ENST00000529355 PELP1Q8IZL8 1130 aaKnown RBP12.76□□□□□ -0.37
CTR9-204ENST00000529355 FAM163AQ96GL9 167 aaPredicted RBP12.76□□□□□ -0.37
CTR9-204ENST00000529355 C7P10643 843 aa12.75□□□□□ -0.37
CTR9-204ENST00000529355 LCE2DQ5TA82 110 aaPredicted RBP12.75□□□□□ -0.37
CTR9-204ENST00000529355 SLC39A7Q92504 469 aa12.75□□□□□ -0.37
CTR9-204ENST00000529355 RGL2O15211 777 aa12.73□□□□□ -0.37
CTR9-204ENST00000529355 FAM212AQ96EL1 285 aa12.73□□□□□ -0.37
CTR9-204ENST00000529355 GSE1Q14687 1217 aa12.72□□□□□ -0.37
CTR9-204ENST00000529355 SCUBE2Q9NQ36 999 aa12.72□□□□□ -0.37
CTR9-204ENST00000529355 PHF12Q96QT6 1004 aa12.7□□□□□ -0.38
CTR9-204ENST00000529355 PYGBP11216 843 aa12.69□□□□□ -0.38
CTR9-204ENST00000529355 ASTLQ6HA08 431 aaPredicted RBP12.69□□□□□ -0.38
CTR9-204ENST00000529355 POTEJP0CG39 1038 aa12.67□□□□□ -0.38
CTR9-204ENST00000529355 RNF25Q96BH1 459 aaPredicted RBP12.67□□□□□ -0.38
CTR9-204ENST00000529355 CCDC61Q9Y6R9 512 aa12.64□□□□□ -0.39
CTR9-204ENST00000529355 DCAF8L2P0C7V8 631 aa12.63□□□□□ -0.39
CTR9-204ENST00000529355 ATMINO43313 823 aaPredicted RBP12.61□□□□□ -0.39
CTR9-204ENST00000529355 CDAN1Q8IWY9 1227 aa12.6□□□□□ -0.39
CTR9-204ENST00000529355 CHRM1P11229 460 aaPredicted RBP12.56□□□□□ -0.4
CTR9-204ENST00000529355 TRIM41Q8WV44 630 aa12.56□□□□□ -0.4
CTR9-204ENST00000529355 MS4A3Q96HJ5 214 aa12.53□□□□□ -0.4
CTR9-204ENST00000529355 MAP3K13O43283 966 aa12.52□□□□□ -0.41
CTR9-204ENST00000529355 KIF12Q96FN5 646 aa12.52□□□□□ -0.41
CTR9-204ENST00000529355 PCDHB8Q9UN66 801 aa12.52□□□□□ -0.41
CTR9-204ENST00000529355 PCDHB13Q9Y5F0 798 aa12.52□□□□□ -0.41
CTR9-204ENST00000529355 RIOK3O14730 519 aaKnown RBP12.49□□□□□ -0.41
CTR9-204ENST00000529355 IFNL1Q8IU54 200 aa12.46□□□□□ -0.41
CTR9-204ENST00000529355 CHGAP10645 457 aaKnown RBP12.44□□□□□ -0.42
CTR9-204ENST00000529355 TRPC6Q9Y210 931 aa12.42□□□□□ -0.42
CTR9-204ENST00000529355 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.41□□□□□ -0.42
CTR9-204ENST00000529355 ATN1P54259 1190 aaPredicted RBP12.41□□□□□ -0.42
CTR9-204ENST00000529355 ZFP91Q96JP5 570 aaPredicted RBP12.41□□□□□ -0.42
CTR9-204ENST00000529355 VGFO15240 615 aaPredicted RBP12.38□□□□□ -0.43
CTR9-204ENST00000529355 MMRN1Q13201 1228 aa12.37□□□□□ -0.43
CTR9-204ENST00000529355 ZNF467Q7Z7K2 595 aaPredicted RBP12.37□□□□□ -0.43
CTR9-204ENST00000529355 STK25O00506 426 aa12.34□□□□□ -0.43
CTR9-204ENST00000529355 HS6ST3Q8IZP7 471 aa12.34□□□□□ -0.43
CTR9-204ENST00000529355 POTEFA5A3E0 1075 aa12.33□□□□□ -0.44
CTR9-204ENST00000529355 PSEN1P49768 467 aa12.33□□□□□ -0.44
CTR9-204ENST00000529355 SGIP1Q9BQI5 828 aa12.33□□□□□ -0.44
CTR9-204ENST00000529355 BCL11BQ9C0K0 894 aaPredicted RBP12.33□□□□□ -0.44
CTR9-204ENST00000529355 PDAP1Q13442 181 aaKnown RBP12.31□□□□□ -0.44
CTR9-204ENST00000529355 STK24Q9Y6E0 443 aa12.31□□□□□ -0.44
CTR9-204ENST00000529355 NKX1-1Q15270 411 aaPredicted RBP12.3□□□□□ -0.44
CTR9-204ENST00000529355 SPNS2Q8IVW8 549 aa12.29□□□□□ -0.44
CTR9-204ENST00000529355 BBXQ8WY36 941 aaPredicted RBP12.28□□□□□ -0.44
CTR9-204ENST00000529355 SEC24BO95487 1268 aa12.27□□□□□ -0.45
CTR9-204ENST00000529355 ST18O60284 1047 aa12.26□□□□□ -0.45
CTR9-204ENST00000529355 BMP2KQ9NSY1 1161 aaPredicted RBP12.26□□□□□ -0.45
CTR9-204ENST00000529355 TAOK2Q9UL54 1235 aa12.25□□□□□ -0.45
CTR9-204ENST00000529355 TIE1P35590 1138 aa12.23□□□□□ -0.45
CTR9-204ENST00000529355 TMEM106CQ9BVX2 250 aa12.22□□□□□ -0.45
CTR9-204ENST00000529355 PLCB2Q00722 1185 aa12.21□□□□□ -0.45
CTR9-204ENST00000529355 PAXIP1Q6ZW49 1069 aaPredicted RBP12.21□□□□□ -0.45
CTR9-204ENST00000529355 CFAP44Q96MT7 982 aa12.2□□□□□ -0.46
CTR9-204ENST00000529355 CABP2Q9NPB3 220 aa12.2□□□□□ -0.46
CTR9-204ENST00000529355 SLAIN1Q8ND83 568 aa12.19□□□□□ -0.46
CTR9-204ENST00000529355 DNAJC5Q9H3Z4 198 aa12.19□□□□□ -0.46
CTR9-204ENST00000529355 TTLL13PA6NNM8 815 aa12.18□□□□□ -0.46
CTR9-204ENST00000529355 COLQQ9Y215 455 aaPredicted RBP12.18□□□□□ -0.46
CTR9-204ENST00000529355 EFCAB3Q8N7B9 438 aa12.17□□□□□ -0.46
CTR9-204ENST00000529355 TMEM121BQ9BXQ6 578 aaPredicted RBP12.17□□□□□ -0.46
CTR9-204ENST00000529355 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.16□□□□□ -0.46
CTR9-204ENST00000529355 GTPBP6O43824 516 aaPredicted RBP12.15□□□□□ -0.46
CTR9-204ENST00000529355 IER5LQ5T953 404 aa12.14□□□□□ -0.47
CTR9-204ENST00000529355 SPRYD3Q8NCJ5 442 aa12.12□□□□□ -0.47
CTR9-204ENST00000529355 MFRPQ9BY79 579 aa12.11□□□□□ -0.47
CTR9-204ENST00000529355 PHF8Q9UPP1 1060 aa12.1□□□□□ -0.47
CTR9-204ENST00000529355 TRIM35Q9UPQ4 493 aa12.1□□□□□ -0.47
CTR9-204ENST00000529355 SLC24A1O60721 1099 aa12.08□□□□□ -0.48
CTR9-204ENST00000529355 HAP1P54257 671 aaPredicted RBP12.06□□□□□ -0.48
CTR9-204ENST00000529355 SNPHO15079 494 aa12.05□□□□□ -0.48
CTR9-204ENST00000529355 FBXO22Q8NEZ5 403 aa12.05□□□□□ -0.48
CTR9-204ENST00000529355 TSHZ2Q9NRE2 1034 aa12.05□□□□□ -0.48
CTR9-204ENST00000529355 PPP1R37O75864 691 aa12.04□□□□□ -0.48
CTR9-204ENST00000529355 MS4A4AQ96JQ5 239 aa12.03□□□□□ -0.48
CTR9-204ENST00000529355 GOLGA2Q08379 1002 aa12.01□□□□□ -0.49
CTR9-204ENST00000529355 SOX12O15370 315 aa12□□□□□ -0.49
CTR9-204ENST00000529355 MKRN3Q13064 507 aaKnown RBP12□□□□□ -0.49
CTR9-204ENST00000529355 DPY19L2Q6NUT2 758 aa11.98□□□□□ -0.49
CTR9-204ENST00000529355 NLRP6P59044 892 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms