RNA–Protein interactions for RNA: ENST00000529046.5

CSDE1-212, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-212ENST00000529046 CLCN6P51797 869 aa13.55□□□□□ -0.24
CSDE1-212ENST00000529046 PHF12Q96QT6 1004 aa13.54□□□□□ -0.24
CSDE1-212ENST00000529046 PLSCR2Q9NRY7 297 aa13.53□□□□□ -0.24
CSDE1-212ENST00000529046 FAM212AQ96EL1 285 aa13.52□□□□□ -0.25
CSDE1-212ENST00000529046 CCDC61Q9Y6R9 512 aa13.51□□□□□ -0.25
CSDE1-212ENST00000529046 SPOCK2Q92563 424 aa13.47□□□□□ -0.25
CSDE1-212ENST00000529046 DCAF8Q5TAQ9 597 aa13.44□□□□□ -0.26
CSDE1-212ENST00000529046 GALR2O43603 387 aaPredicted RBP13.41□□□□□ -0.26
CSDE1-212ENST00000529046 GSE1Q14687 1217 aa13.39□□□□□ -0.27
CSDE1-212ENST00000529046 KIF12Q96FN5 646 aa13.39□□□□□ -0.27
CSDE1-212ENST00000529046 MS4A3Q96HJ5 214 aa13.37□□□□□ -0.27
CSDE1-212ENST00000529046 MAP3K13O43283 966 aa13.34□□□□□ -0.27
CSDE1-212ENST00000529046 DCBLD2Q96PD2 775 aa13.33□□□□□ -0.28
CSDE1-212ENST00000529046 CIZ1Q9ULV3 898 aaPredicted RBP13.32□□□□□ -0.28
CSDE1-212ENST00000529046 PYGBP11216 843 aa13.3□□□□□ -0.28
CSDE1-212ENST00000529046 SGIP1Q9BQI5 828 aa13.29□□□□□ -0.28
CSDE1-212ENST00000529046 PCDHB13Q9Y5F0 798 aa13.29□□□□□ -0.28
CSDE1-212ENST00000529046 POTEIP0CG38 1075 aa13.26□□□□□ -0.29
CSDE1-212ENST00000529046 IFNL1Q8IU54 200 aa13.21□□□□□ -0.29
CSDE1-212ENST00000529046 CHRM1P11229 460 aaPredicted RBP13.2□□□□□ -0.3
CSDE1-212ENST00000529046 TRPC6Q9Y210 931 aa13.2□□□□□ -0.3
CSDE1-212ENST00000529046 ASTLQ6HA08 431 aaPredicted RBP13.17□□□□□ -0.3
CSDE1-212ENST00000529046 TRIM41Q8WV44 630 aa13.17□□□□□ -0.3
CSDE1-212ENST00000529046 TIE1P35590 1138 aa13.16□□□□□ -0.3
CSDE1-212ENST00000529046 ATMINO43313 823 aaPredicted RBP13.15□□□□□ -0.3
CSDE1-212ENST00000529046 BMP2KQ9NSY1 1161 aaPredicted RBP13.15□□□□□ -0.3
CSDE1-212ENST00000529046 ZNF467Q7Z7K2 595 aaPredicted RBP13.14□□□□□ -0.31
CSDE1-212ENST00000529046 PCDHB8Q9UN66 801 aa13.14□□□□□ -0.31
CSDE1-212ENST00000529046 TTLL13PA6NNM8 815 aa13.1□□□□□ -0.31
CSDE1-212ENST00000529046 ATN1P54259 1190 aaPredicted RBP13.1□□□□□ -0.31
CSDE1-212ENST00000529046 PELP1Q8IZL8 1130 aaKnown RBP13.09□□□□□ -0.31
CSDE1-212ENST00000529046 TMEM106CQ9BVX2 250 aa13.07□□□□□ -0.32
CSDE1-212ENST00000529046 AMER1Q5JTC6 1135 aaPredicted RBP13.06□□□□□ -0.32
CSDE1-212ENST00000529046 SLC39A7Q92504 469 aa13.04□□□□□ -0.32
CSDE1-212ENST00000529046 RTN4Q9NQC3 1192 aaKnown RBP13.02□□□□□ -0.33
CSDE1-212ENST00000529046 TRIM35Q9UPQ4 493 aa13.02□□□□□ -0.33
CSDE1-212ENST00000529046 METRNQ9UJH8 293 aa13.01□□□□□ -0.33
CSDE1-212ENST00000529046 ECM2O94769 699 aaPredicted RBP13□□□□□ -0.33
CSDE1-212ENST00000529046 C7P10643 843 aa13□□□□□ -0.33
CSDE1-212ENST00000529046 PSEN1P49768 467 aa13□□□□□ -0.33
CSDE1-212ENST00000529046 PDAP1Q13442 181 aaKnown RBP12.99□□□□□ -0.33
CSDE1-212ENST00000529046 PKD2Q13563 968 aa12.99□□□□□ -0.33
CSDE1-212ENST00000529046 RIOK3O14730 519 aaKnown RBP12.96□□□□□ -0.33
CSDE1-212ENST00000529046 RNF25Q96BH1 459 aaPredicted RBP12.96□□□□□ -0.33
CSDE1-212ENST00000529046 IER5LQ5T953 404 aa12.93□□□□□ -0.34
CSDE1-212ENST00000529046 POTEMA6NI47 508 aa12.92□□□□□ -0.34
CSDE1-212ENST00000529046 GOLGA2Q08379 1002 aa12.9□□□□□ -0.34
CSDE1-212ENST00000529046 VGFO15240 615 aaPredicted RBP12.89□□□□□ -0.35
CSDE1-212ENST00000529046 SEC24BO95487 1268 aa12.89□□□□□ -0.35
CSDE1-212ENST00000529046 TAOK2Q9UL54 1235 aa12.87□□□□□ -0.35
CSDE1-212ENST00000529046 RGL2O15211 777 aa12.86□□□□□ -0.35
CSDE1-212ENST00000529046 OTUD5Q96G74 571 aa12.86□□□□□ -0.35
CSDE1-212ENST00000529046 POTEFA5A3E0 1075 aa12.85□□□□□ -0.35
CSDE1-212ENST00000529046 MKRN3Q13064 507 aaKnown RBP12.85□□□□□ -0.35
CSDE1-212ENST00000529046 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.84□□□□□ -0.35
CSDE1-212ENST00000529046 POTEB2H3BUK9 544 aa12.84□□□□□ -0.35
CSDE1-212ENST00000529046 POTEGQ6S5H5 508 aa12.84□□□□□ -0.35
CSDE1-212ENST00000529046 ZFP91Q96JP5 570 aaPredicted RBP12.84□□□□□ -0.35
CSDE1-212ENST00000529046 CABP2Q9NPB3 220 aa12.84□□□□□ -0.35
CSDE1-212ENST00000529046 COLQQ9Y215 455 aaPredicted RBP12.84□□□□□ -0.35
CSDE1-212ENST00000529046 PLCG2P16885 1265 aa12.83□□□□□ -0.36
CSDE1-212ENST00000529046 IRX5P78411 483 aaPredicted RBP12.82□□□□□ -0.36
CSDE1-212ENST00000529046 PCDH10Q9P2E7 1040 aa12.8□□□□□ -0.36
CSDE1-212ENST00000529046 OCEL1Q9H607 264 aa12.78□□□□□ -0.36
CSDE1-212ENST00000529046 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.75□□□□□ -0.372e-12■■□□□ 13.1
CSDE1-212ENST00000529046 BCL11BQ9C0K0 894 aaPredicted RBP12.74□□□□□ -0.37
CSDE1-212ENST00000529046 STK25O00506 426 aa12.73□□□□□ -0.37
CSDE1-212ENST00000529046 POTEJP0CG39 1038 aa12.73□□□□□ -0.37
CSDE1-212ENST00000529046 EFCAB3Q8N7B9 438 aa12.73□□□□□ -0.37
CSDE1-212ENST00000529046 STK24Q9Y6E0 443 aa12.73□□□□□ -0.37
CSDE1-212ENST00000529046 MAMSTRQ6ZN01 415 aa12.72□□□□□ -0.37
CSDE1-212ENST00000529046 PDCD7Q8N8D1 485 aaKnown RBP12.71□□□□□ -0.37
CSDE1-212ENST00000529046 SCUBE2Q9NQ36 999 aa12.69□□□□□ -0.38
CSDE1-212ENST00000529046 ILDR1Q86SU0 546 aaPredicted RBP12.67□□□□□ -0.38
CSDE1-212ENST00000529046 SOX12O15370 315 aa12.65□□□□□ -0.38
CSDE1-212ENST00000529046 L3MBTL3Q96JM7 780 aaPredicted RBP12.62□□□□□ -0.39
CSDE1-212ENST00000529046 HS6ST3Q8IZP7 471 aa12.6□□□□□ -0.39
CSDE1-212ENST00000529046 PHF8Q9UPP1 1060 aa12.6□□□□□ -0.39
CSDE1-212ENST00000529046 CHGAP10645 457 aaKnown RBP12.59□□□□□ -0.39
CSDE1-212ENST00000529046 DPY19L2Q6NUT2 758 aa12.59□□□□□ -0.39
CSDE1-212ENST00000529046 DCAF8L2P0C7V8 631 aa12.57□□□□□ -0.4
CSDE1-212ENST00000529046 NLRP6P59044 892 aa12.57□□□□□ -0.4
CSDE1-212ENST00000529046 G3V3G9 751 aa12.56□□□□□ -0.4
CSDE1-212ENST00000529046 C3orf67Q6ZVT6 689 aa12.54□□□□□ -0.4
CSDE1-212ENST00000529046 MS4A4AQ96JQ5 239 aa12.54□□□□□ -0.4
CSDE1-212ENST00000529046 MFRPQ9BY79 579 aa12.54□□□□□ -0.4
CSDE1-212ENST00000529046 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.54□□□□□ -0.4
CSDE1-212ENST00000529046 BOLA1Q9Y3E2 137 aa12.54□□□□□ -0.4
CSDE1-212ENST00000529046 FBXO22Q8NEZ5 403 aa12.52□□□□□ -0.41
CSDE1-212ENST00000529046 SLAIN1Q8ND83 568 aa12.51□□□□□ -0.41
CSDE1-212ENST00000529046 LCE2DQ5TA82 110 aaPredicted RBP12.46□□□□□ -0.41
CSDE1-212ENST00000529046 MICALL2Q8IY33 904 aa12.45□□□□□ -0.42
CSDE1-212ENST00000529046 TMEM121BQ9BXQ6 578 aaPredicted RBP12.45□□□□□ -0.42
CSDE1-212ENST00000529046 DNAJC5Q9H3Z4 198 aa12.45□□□□□ -0.42
CSDE1-212ENST00000529046 NKX1-1Q15270 411 aaPredicted RBP12.4□□□□□ -0.42
CSDE1-212ENST00000529046 RYDENQ9NUL5 291 aaKnown RBP12.36□□□□□ -0.43
CSDE1-212ENST00000529046 PPP1R37O75864 691 aa12.34□□□□□ -0.43
CSDE1-212ENST00000529046 FAM163AQ96GL9 167 aaPredicted RBP12.34□□□□□ -0.43
CSDE1-212ENST00000529046 SNPHO15079 494 aa12.31□□□□□ -0.44
CSDE1-212ENST00000529046 TMEM92Q6UXU6 159 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms