RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 TRIM41Q8WV44 630 aa12.69□□□□□ -0.38
CD44-230ENST00000528922 PYGBP11216 843 aa12.63□□□□□ -0.39
CD44-230ENST00000528922 CHRM1P11229 460 aaPredicted RBP12.63□□□□□ -0.39
CD44-230ENST00000528922 CCDC61Q9Y6R9 512 aa12.62□□□□□ -0.39
CD44-230ENST00000528922 DCAF8L2P0C7V8 631 aa12.62□□□□□ -0.39
CD44-230ENST00000528922 RNF25Q96BH1 459 aaPredicted RBP12.62□□□□□ -0.39
CD44-230ENST00000528922 CD44P16070 742 aaKnown RBP12.61□□□□□ -0.39
CD44-230ENST00000528922 C19orf67A6NJJ6 358 aa12.59□□□□□ -0.39
CD44-230ENST00000528922 PAK3O75914 559 aaPredicted RBP12.59□□□□□ -0.39
CD44-230ENST00000528922 ZRANB1Q9UGI0 708 aa12.57□□□□□ -0.4
CD44-230ENST00000528922 RIOK3O14730 519 aaKnown RBP12.52□□□□□ -0.41
CD44-230ENST00000528922 HAX1O00165 279 aa12.5□□□□□ -0.41
CD44-230ENST00000528922 KIF12Q96FN5 646 aa12.5□□□□□ -0.41
CD44-230ENST00000528922 PHF12Q96QT6 1004 aa12.49□□□□□ -0.41
CD44-230ENST00000528922 EVX2Q03828 476 aa12.48□□□□□ -0.41
CD44-230ENST00000528922 MAP3K13O43283 966 aa12.47□□□□□ -0.41
CD44-230ENST00000528922 ZNF579Q8NAF0 562 aaKnown RBP12.45□□□□□ -0.42
CD44-230ENST00000528922 PCDHB8Q9UN66 801 aa12.45□□□□□ -0.42
CD44-230ENST00000528922 PCDHB13Q9Y5F0 798 aa12.45□□□□□ -0.42
CD44-230ENST00000528922 CHGAP10645 457 aaKnown RBP12.43□□□□□ -0.42
CD44-230ENST00000528922 VGFO15240 615 aaPredicted RBP12.42□□□□□ -0.42
CD44-230ENST00000528922 ZNF467Q7Z7K2 595 aaPredicted RBP12.42□□□□□ -0.42
CD44-230ENST00000528922 IFNL1Q8IU54 200 aa12.42□□□□□ -0.42
CD44-230ENST00000528922 SGIP1Q9BQI5 828 aa12.41□□□□□ -0.42
CD44-230ENST00000528922 TAOK2Q9UL54 1235 aa12.39□□□□□ -0.43
CD44-230ENST00000528922 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.38□□□□□ -0.43
CD44-230ENST00000528922 HS6ST3Q8IZP7 471 aa12.38□□□□□ -0.43
CD44-230ENST00000528922 ZFP91Q96JP5 570 aaPredicted RBP12.38□□□□□ -0.43
CD44-230ENST00000528922 STK25O00506 426 aa12.35□□□□□ -0.43
CD44-230ENST00000528922 BBXQ8WY36 941 aaPredicted RBP12.35□□□□□ -0.43
CD44-230ENST00000528922 MS4A3Q96HJ5 214 aa12.35□□□□□ -0.43
CD44-230ENST00000528922 PDAP1Q13442 181 aaKnown RBP12.34□□□□□ -0.43
CD44-230ENST00000528922 BCL11BQ9C0K0 894 aaPredicted RBP12.33□□□□□ -0.44
CD44-230ENST00000528922 PSEN1P49768 467 aa12.32□□□□□ -0.44
CD44-230ENST00000528922 TRPC6Q9Y210 931 aa12.3□□□□□ -0.44
CD44-230ENST00000528922 STK24Q9Y6E0 443 aa12.3□□□□□ -0.44
CD44-230ENST00000528922 GALR2O43603 387 aaPredicted RBP12.28□□□□□ -0.44
CD44-230ENST00000528922 DNAJC5Q9H3Z4 198 aa12.28□□□□□ -0.44
CD44-230ENST00000528922 PLCB2Q00722 1185 aa12.26□□□□□ -0.45
CD44-230ENST00000528922 NKX1-1Q15270 411 aaPredicted RBP12.26□□□□□ -0.45
CD44-230ENST00000528922 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.26□□□□□ -0.45
CD44-230ENST00000528922 CLCN6P51797 869 aa12.22□□□□□ -0.45
CD44-230ENST00000528922 PAXIP1Q6ZW49 1069 aaPredicted RBP12.21□□□□□ -0.45
CD44-230ENST00000528922 GABBR2O75899 941 aa12.2□□□□□ -0.46
CD44-230ENST00000528922 TMEM106CQ9BVX2 250 aa12.19□□□□□ -0.46
CD44-230ENST00000528922 CFAP44Q96MT7 982 aa12.18□□□□□ -0.46
CD44-230ENST00000528922 SLC24A1O60721 1099 aa12.17□□□□□ -0.46
CD44-230ENST00000528922 SPRYD3Q8NCJ5 442 aa12.17□□□□□ -0.46
CD44-230ENST00000528922 CABP2Q9NPB3 220 aa12.17□□□□□ -0.46
CD44-230ENST00000528922 TIE1P35590 1138 aa12.16□□□□□ -0.46
CD44-230ENST00000528922 BMP2KQ9NSY1 1161 aaPredicted RBP12.16□□□□□ -0.46
CD44-230ENST00000528922 TTLL13PA6NNM8 815 aa12.14□□□□□ -0.47
CD44-230ENST00000528922 GTPBP6O43824 516 aaPredicted RBP12.14□□□□□ -0.47
CD44-230ENST00000528922 EFCAB3Q8N7B9 438 aa12.14□□□□□ -0.47
CD44-230ENST00000528922 SP7Q8TDD2 431 aaPredicted RBP12.11□□□□□ -0.47
CD44-230ENST00000528922 MFRPQ9BY79 579 aa12.09□□□□□ -0.47
CD44-230ENST00000528922 ATMINO43313 823 aaPredicted RBP12.07□□□□□ -0.48
CD44-230ENST00000528922 ATN1P54259 1190 aaPredicted RBP12.07□□□□□ -0.48
CD44-230ENST00000528922 SOX12O15370 315 aa12.06□□□□□ -0.48
CD44-230ENST00000528922 HAP1P54257 671 aaPredicted RBP12.06□□□□□ -0.48
CD44-230ENST00000528922 ASTLQ6HA08 431 aaPredicted RBP12.06□□□□□ -0.48
CD44-230ENST00000528922 TRIM35Q9UPQ4 493 aa12.06□□□□□ -0.48
CD44-230ENST00000528922 GOLGA2Q08379 1002 aa12.05□□□□□ -0.48
CD44-230ENST00000528922 PHF8Q9UPP1 1060 aa12.05□□□□□ -0.48
CD44-230ENST00000528922 FBXO22Q8NEZ5 403 aa12.04□□□□□ -0.48
CD44-230ENST00000528922 MKRN3Q13064 507 aaKnown RBP12.02□□□□□ -0.49
CD44-230ENST00000528922 TSHZ2Q9NRE2 1034 aa12.02□□□□□ -0.49
CD44-230ENST00000528922 DCBLD2Q96PD2 775 aa12.01□□□□□ -0.49
CD44-230ENST00000528922 RYDENQ9NUL5 291 aaKnown RBP12.01□□□□□ -0.49
CD44-230ENST00000528922 NLRP6P59044 892 aa12□□□□□ -0.49
CD44-230ENST00000528922 PELP1Q8IZL8 1130 aaKnown RBP11.99□□□□□ -0.49
CD44-230ENST00000528922 POTEIP0CG38 1075 aa11.98□□□□□ -0.49
CD44-230ENST00000528922 MS4A4AQ96JQ5 239 aa11.98□□□□□ -0.49
CD44-230ENST00000528922 PPP1R37O75864 691 aa11.96□□□□□ -0.49
CD44-230ENST00000528922 ILDR1Q86SU0 546 aaPredicted RBP11.95□□□□□ -0.5
CD44-230ENST00000528922 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.94□□□□□ -0.5
CD44-230ENST00000528922 IER5LQ5T953 404 aa11.91□□□□□ -0.5
CD44-230ENST00000528922 IRX5P78411 483 aaPredicted RBP11.9□□□□□ -0.5
CD44-230ENST00000528922 KDM2AQ9Y2K7 1162 aa11.89□□□□□ -0.51
CD44-230ENST00000528922 DPY19L2Q6NUT2 758 aa11.88□□□□□ -0.51
CD44-230ENST00000528922 PDCD7Q8N8D1 485 aaKnown RBP11.88□□□□□ -0.51
CD44-230ENST00000528922 VSIG10Q8N0Z9 540 aa11.87□□□□□ -0.51
CD44-230ENST00000528922 OCEL1Q9H607 264 aa11.86□□□□□ -0.51
CD44-230ENST00000528922 COLQQ9Y215 455 aaPredicted RBP11.86□□□□□ -0.51
CD44-230ENST00000528922 CADPS2Q86UW7 1296 aa11.85□□□□□ -0.51
CD44-230ENST00000528922 SLC39A7Q92504 469 aa11.85□□□□□ -0.51
CD44-230ENST00000528922 POTEFA5A3E0 1075 aa11.84□□□□□ -0.51
CD44-230ENST00000528922 C7P10643 843 aa11.83□□□□□ -0.52
CD44-230ENST00000528922 PLCG2P16885 1265 aa11.82□□□□□ -0.52
CD44-230ENST00000528922 METRNQ9UJH8 293 aa11.81□□□□□ -0.52
CD44-230ENST00000528922 SEC24BO95487 1268 aa11.8□□□□□ -0.52
CD44-230ENST00000528922 MICALL2Q8IY33 904 aa11.74□□□□□ -0.53
CD44-230ENST00000528922 BOLA1Q9Y3E2 137 aa11.73□□□□□ -0.53
CD44-230ENST00000528922 TMEM121BQ9BXQ6 578 aaPredicted RBP11.72□□□□□ -0.53
CD44-230ENST00000528922 L3MBTL3Q96JM7 780 aaPredicted RBP11.7□□□□□ -0.54
CD44-230ENST00000528922 NCKAP5LQ9HCH0 1330 aa11.69□□□□□ -0.54
CD44-230ENST00000528922 CRISPLD2Q9H0B8 497 aa11.66□□□□□ -0.54
CD44-230ENST00000528922 G3V3G9 751 aa11.65□□□□□ -0.54
CD44-230ENST00000528922 PDE4AP27815 886 aa11.64□□□□□ -0.55
CD44-230ENST00000528922 LARP6Q9BRS8 491 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms