RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 CD44P16070 742 aaKnown RBP15.55■□□□□ 0.08
PCF11-202ENST00000528336 TRIM41Q8WV44 630 aa15.55■□□□□ 0.08
PCF11-202ENST00000528336 PYGBP11216 843 aa15.53■□□□□ 0.08
PCF11-202ENST00000528336 ZRANB1Q9UGI0 708 aa15.51■□□□□ 0.07
PCF11-202ENST00000528336 RGL2O15211 777 aa15.5■□□□□ 0.07
PCF11-202ENST00000528336 C19orf67A6NJJ6 358 aa15.48■□□□□ 0.07
PCF11-202ENST00000528336 HAX1O00165 279 aa15.48■□□□□ 0.07
PCF11-202ENST00000528336 POTEHQ6S545 545 aa15.47■□□□□ 0.07
PCF11-202ENST00000528336 CCDC61Q9Y6R9 512 aa15.47■□□□□ 0.07
PCF11-202ENST00000528336 CHRM1P11229 460 aaPredicted RBP15.44■□□□□ 0.06
PCF11-202ENST00000528336 RNF25Q96BH1 459 aaPredicted RBP15.39■□□□□ 0.05
PCF11-202ENST00000528336 PHF12Q96QT6 1004 aa15.38■□□□□ 0.05
PCF11-202ENST00000528336 EVX2Q03828 476 aa15.35■□□□□ 0.05
PCF11-202ENST00000528336 RIOK3O14730 519 aaKnown RBP15.34■□□□□ 0.05
PCF11-202ENST00000528336 KIF12Q96FN5 646 aa15.33■□□□□ 0.04
PCF11-202ENST00000528336 MAP3K13O43283 966 aa15.32■□□□□ 0.04
PCF11-202ENST00000528336 ZNF579Q8NAF0 562 aaKnown RBP15.31■□□□□ 0.04
PCF11-202ENST00000528336 PCDHB8Q9UN66 801 aa15.31■□□□□ 0.04
PCF11-202ENST00000528336 PCDHB13Q9Y5F0 798 aa15.31■□□□□ 0.04
PCF11-202ENST00000528336 ZNF467Q7Z7K2 595 aaPredicted RBP15.26■□□□□ 0.03
PCF11-202ENST00000528336 CHGAP10645 457 aaKnown RBP15.24■□□□□ 0.03
PCF11-202ENST00000528336 IFNL1Q8IU54 200 aa15.24■□□□□ 0.03
PCF11-202ENST00000528336 TAOK2Q9UL54 1235 aa15.24■□□□□ 0.03
PCF11-202ENST00000528336 VGFO15240 615 aaPredicted RBP15.23■□□□□ 0.03
PCF11-202ENST00000528336 SGIP1Q9BQI5 828 aa15.22■□□□□ 0.03
PCF11-202ENST00000528336 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.18■□□□□ 0.02
PCF11-202ENST00000528336 MS4A3Q96HJ5 214 aa15.18■□□□□ 0.02
PCF11-202ENST00000528336 ZFP91Q96JP5 570 aaPredicted RBP15.18■□□□□ 0.02
PCF11-202ENST00000528336 STK25O00506 426 aa15.16■□□□□ 0.02
PCF11-202ENST00000528336 PDAP1Q13442 181 aaKnown RBP15.16■□□□□ 0.02
PCF11-202ENST00000528336 PSEN1P49768 467 aa15.14■□□□□ 0.01
PCF11-202ENST00000528336 HS6ST3Q8IZP7 471 aa15.12■□□□□ 0.01
PCF11-202ENST00000528336 BCL11BQ9C0K0 894 aaPredicted RBP15.11■□□□□ 0.01
PCF11-202ENST00000528336 STK24Q9Y6E0 443 aa15.11■□□□□ 0.01
PCF11-202ENST00000528336 GALR2O43603 387 aaPredicted RBP15.1■□□□□ 0.01
PCF11-202ENST00000528336 TRPC6Q9Y210 931 aa15.09■□□□□ 0.01
PCF11-202ENST00000528336 BBXQ8WY36 941 aaPredicted RBP15.07■□□□□ 0
PCF11-202ENST00000528336 GABBR2O75899 941 aa15.05■□□□□ -0
PCF11-202ENST00000528336 CLCN6P51797 869 aa15.05■□□□□ -0
PCF11-202ENST00000528336 TMEM106CQ9BVX2 250 aa15.02■□□□□ -0
PCF11-202ENST00000528336 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.02■□□□□ -0
PCF11-202ENST00000528336 CABP2Q9NPB3 220 aa14.97□□□□□ -0.01
PCF11-202ENST00000528336 SP7Q8TDD2 431 aaPredicted RBP14.96□□□□□ -0.01
PCF11-202ENST00000528336 TIE1P35590 1138 aa14.95□□□□□ -0.02
PCF11-202ENST00000528336 BMP2KQ9NSY1 1161 aaPredicted RBP14.95□□□□□ -0.02
PCF11-202ENST00000528336 NKX1-1Q15270 411 aaPredicted RBP14.94□□□□□ -0.02
PCF11-202ENST00000528336 PAXIP1Q6ZW49 1069 aaPredicted RBP14.94□□□□□ -0.02
PCF11-202ENST00000528336 TTLL13PA6NNM8 815 aa14.93□□□□□ -0.02
PCF11-202ENST00000528336 CFAP44Q96MT7 982 aa14.93□□□□□ -0.02
PCF11-202ENST00000528336 DNAJC5Q9H3Z4 198 aa14.93□□□□□ -0.02
PCF11-202ENST00000528336 PLCB2Q00722 1185 aa14.9□□□□□ -0.02
PCF11-202ENST00000528336 GOLGA2Q08379 1002 aa14.9□□□□□ -0.02
PCF11-202ENST00000528336 EFCAB3Q8N7B9 438 aa14.9□□□□□ -0.02
PCF11-202ENST00000528336 SPRYD3Q8NCJ5 442 aa14.89□□□□□ -0.03
PCF11-202ENST00000528336 DCBLD2Q96PD2 775 aa14.87□□□□□ -0.03
PCF11-202ENST00000528336 ATMINO43313 823 aaPredicted RBP14.84□□□□□ -0.03
PCF11-202ENST00000528336 ATN1P54259 1190 aaPredicted RBP14.84□□□□□ -0.03
PCF11-202ENST00000528336 TRIM35Q9UPQ4 493 aa14.84□□□□□ -0.03
PCF11-202ENST00000528336 MKRN3Q13064 507 aaKnown RBP14.82□□□□□ -0.04
PCF11-202ENST00000528336 ASTLQ6HA08 431 aaPredicted RBP14.81□□□□□ -0.04
PCF11-202ENST00000528336 GTPBP6O43824 516 aaPredicted RBP14.8□□□□□ -0.04
PCF11-202ENST00000528336 SOX12O15370 315 aa14.78□□□□□ -0.04
PCF11-202ENST00000528336 MFRPQ9BY79 579 aa14.78□□□□□ -0.04
PCF11-202ENST00000528336 PHF8Q9UPP1 1060 aa14.78□□□□□ -0.04
PCF11-202ENST00000528336 SLC24A1O60721 1099 aa14.75□□□□□ -0.05
PCF11-202ENST00000528336 HAP1P54257 671 aaPredicted RBP14.75□□□□□ -0.05
PCF11-202ENST00000528336 NLRP6P59044 892 aa14.74□□□□□ -0.05
PCF11-202ENST00000528336 RYDENQ9NUL5 291 aaKnown RBP14.74□□□□□ -0.05
PCF11-202ENST00000528336 PELP1Q8IZL8 1130 aaKnown RBP14.73□□□□□ -0.05
PCF11-202ENST00000528336 POTEIP0CG38 1075 aa14.72□□□□□ -0.05
PCF11-202ENST00000528336 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.71□□□□□ -0.051e-7■■■■■ 29.8
PCF11-202ENST00000528336 FBXO22Q8NEZ5 403 aa14.7□□□□□ -0.06
PCF11-202ENST00000528336 TSHZ2Q9NRE2 1034 aa14.66□□□□□ -0.06
PCF11-202ENST00000528336 MS4A4AQ96JQ5 239 aa14.65□□□□□ -0.06
PCF11-202ENST00000528336 IER5LQ5T953 404 aa14.64□□□□□ -0.07
PCF11-202ENST00000528336 PPP1R37O75864 691 aa14.63□□□□□ -0.07
PCF11-202ENST00000528336 SLC39A7Q92504 469 aa14.61□□□□□ -0.07
PCF11-202ENST00000528336 SEC24BO95487 1268 aa14.6□□□□□ -0.07
PCF11-202ENST00000528336 IRX5P78411 483 aaPredicted RBP14.6□□□□□ -0.07
PCF11-202ENST00000528336 OCEL1Q9H607 264 aa14.6□□□□□ -0.07
PCF11-202ENST00000528336 DPY19L2Q6NUT2 758 aa14.59□□□□□ -0.07
PCF11-202ENST00000528336 C7P10643 843 aa14.58□□□□□ -0.08
PCF11-202ENST00000528336 PLCG2P16885 1265 aa14.58□□□□□ -0.08
PCF11-202ENST00000528336 ILDR1Q86SU0 546 aaPredicted RBP14.58□□□□□ -0.08
PCF11-202ENST00000528336 METRNQ9UJH8 293 aa14.57□□□□□ -0.08
PCF11-202ENST00000528336 PDCD7Q8N8D1 485 aaKnown RBP14.56□□□□□ -0.08
PCF11-202ENST00000528336 COLQQ9Y215 455 aaPredicted RBP14.56□□□□□ -0.08
PCF11-202ENST00000528336 POTEFA5A3E0 1075 aa14.5□□□□□ -0.09
PCF11-202ENST00000528336 CADPS2Q86UW7 1296 aa14.45□□□□□ -0.1
PCF11-202ENST00000528336 VSIG10Q8N0Z9 540 aa14.45□□□□□ -0.1
PCF11-202ENST00000528336 G3V3G9 751 aa14.44□□□□□ -0.1
PCF11-202ENST00000528336 KDM2AQ9Y2K7 1162 aa14.44□□□□□ -0.1
PCF11-202ENST00000528336 L3MBTL3Q96JM7 780 aaPredicted RBP14.42□□□□□ -0.1
PCF11-202ENST00000528336 BOLA1Q9Y3E2 137 aa14.42□□□□□ -0.1
PCF11-202ENST00000528336 MICALL2Q8IY33 904 aa14.41□□□□□ -0.1
PCF11-202ENST00000528336 TMEM121BQ9BXQ6 578 aaPredicted RBP14.34□□□□□ -0.11
PCF11-202ENST00000528336 PDE4AP27815 886 aa14.28□□□□□ -0.12
PCF11-202ENST00000528336 LARP6Q9BRS8 491 aaKnown RBP14.28□□□□□ -0.12
PCF11-202ENST00000528336 NCKAP5LQ9HCH0 1330 aa14.28□□□□□ -0.12
PCF11-202ENST00000528336 WDR70Q9NW82 654 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms