RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 HRCP23327 699 aa9.73□□□□□ -0.85
CD44-225ENST00000527326 LHX8Q68G74 356 aa9.67□□□□□ -0.86
CD44-225ENST00000527326 RASEFQ8IZ41 740 aa9.66□□□□□ -0.86
CD44-225ENST00000527326 ZBTB47Q9UFB7 747 aaPredicted RBP9.66□□□□□ -0.86
CD44-225ENST00000527326 FBXO3Q9UK99 471 aa9.66□□□□□ -0.86
CD44-225ENST00000527326 CCDC61Q9Y6R9 512 aa9.64□□□□□ -0.87
CD44-225ENST00000527326 NISCHQ9Y2I1 1504 aa9.64□□□□□ -0.87
CD44-225ENST00000527326 MS4A3Q96HJ5 214 aa9.63□□□□□ -0.87
CD44-225ENST00000527326 KIF12Q96FN5 646 aa9.6□□□□□ -0.87
CD44-225ENST00000527326 NUBP1P53384 320 aa9.58□□□□□ -0.88
CD44-225ENST00000527326 MAP3K13O43283 966 aa9.56□□□□□ -0.88
CD44-225ENST00000527326 VASPP50552 380 aaPredicted RBP9.54□□□□□ -0.88
CD44-225ENST00000527326 FAM212AQ96EL1 285 aa9.54□□□□□ -0.88
CD44-225ENST00000527326 KLHL34Q8N239 644 aa9.53□□□□□ -0.88
CD44-225ENST00000527326 ATMINO43313 823 aaPredicted RBP9.52□□□□□ -0.89
CD44-225ENST00000527326 ASTLQ6HA08 431 aaPredicted RBP9.52□□□□□ -0.89
CD44-225ENST00000527326 DCAF8Q5TAQ9 597 aa9.5□□□□□ -0.89
CD44-225ENST00000527326 TRPC6Q9Y210 931 aa9.48□□□□□ -0.89
CD44-225ENST00000527326 PCDHB13Q9Y5F0 798 aa9.48□□□□□ -0.89
CD44-225ENST00000527326 ATN1P54259 1190 aaPredicted RBP9.47□□□□□ -0.89
CD44-225ENST00000527326 RTN4Q9NQC3 1192 aaKnown RBP9.47□□□□□ -0.89
CD44-225ENST00000527326 BMP2KQ9NSY1 1161 aaPredicted RBP9.47□□□□□ -0.89
CD44-225ENST00000527326 METRNQ9UJH8 293 aa9.47□□□□□ -0.89
CD44-225ENST00000527326 C7P10643 843 aa9.46□□□□□ -0.9
CD44-225ENST00000527326 SLC39A7Q92504 469 aa9.46□□□□□ -0.9
CD44-225ENST00000527326 SGIP1Q9BQI5 828 aa9.45□□□□□ -0.9
CD44-225ENST00000527326 POTEB2H3BUK9 544 aa9.44□□□□□ -0.9
CD44-225ENST00000527326 TIE1P35590 1138 aa9.44□□□□□ -0.9
CD44-225ENST00000527326 IFNL1Q8IU54 200 aa9.42□□□□□ -0.9
CD44-225ENST00000527326 PYGBP11216 843 aa9.41□□□□□ -0.9
CD44-225ENST00000527326 TTLL13PA6NNM8 815 aa9.4□□□□□ -0.9
CD44-225ENST00000527326 SLC24A1O60721 1099 aa9.38□□□□□ -0.91
CD44-225ENST00000527326 GSE1Q14687 1217 aa9.38□□□□□ -0.91
CD44-225ENST00000527326 AMER1Q5JTC6 1135 aaPredicted RBP9.38□□□□□ -0.91
CD44-225ENST00000527326 OTUD5Q96G74 571 aa9.38□□□□□ -0.91
CD44-225ENST00000527326 IFNLR1Q8IU57 520 aaPredicted RBP9.36□□□□□ -0.91
CD44-225ENST00000527326 TMEM106CQ9BVX2 250 aa9.36□□□□□ -0.91
CD44-225ENST00000527326 SPOCK2Q92563 424 aa9.35□□□□□ -0.91
CD44-225ENST00000527326 TRIM35Q9UPQ4 493 aa9.35□□□□□ -0.91
CD44-225ENST00000527326 SEC24BO95487 1268 aa9.34□□□□□ -0.91
CD44-225ENST00000527326 PCDHB8Q9UN66 801 aa9.34□□□□□ -0.91
CD44-225ENST00000527326 ERICH6Q7L0X2 663 aa9.33□□□□□ -0.92
CD44-225ENST00000527326 POTEJP0CG39 1038 aa9.32□□□□□ -0.92
CD44-225ENST00000527326 POTEFA5A3E0 1075 aa9.31□□□□□ -0.92
CD44-225ENST00000527326 MAMSTRQ6ZN01 415 aa9.31□□□□□ -0.92
CD44-225ENST00000527326 CIZ1Q9ULV3 898 aaPredicted RBP9.3□□□□□ -0.92
CD44-225ENST00000527326 COLQQ9Y215 455 aaPredicted RBP9.3□□□□□ -0.92
CD44-225ENST00000527326 IER5LQ5T953 404 aa9.29□□□□□ -0.92
CD44-225ENST00000527326 CHRM1P11229 460 aaPredicted RBP9.28□□□□□ -0.92
CD44-225ENST00000527326 PRKCSHP14314 528 aaPredicted RBP9.28□□□□□ -0.92
CD44-225ENST00000527326 SCUBE2Q9NQ36 999 aa9.27□□□□□ -0.93
CD44-225ENST00000527326 ZNF467Q7Z7K2 595 aaPredicted RBP9.26□□□□□ -0.93
CD44-225ENST00000527326 PPARGC1BQ86YN6 1023 aaKnown RBP9.24□□□□□ -0.93
CD44-225ENST00000527326 PLCG2P16885 1265 aa9.23□□□□□ -0.93
CD44-225ENST00000527326 BCL11AQ9H165 835 aa9.21□□□□□ -0.94
CD44-225ENST00000527326 PSEN1P49768 467 aa9.2□□□□□ -0.94
CD44-225ENST00000527326 IRX5P78411 483 aaPredicted RBP9.19□□□□□ -0.94
CD44-225ENST00000527326 GOLGA2Q08379 1002 aa9.18□□□□□ -0.94
CD44-225ENST00000527326 OCEL1Q9H607 264 aa9.18□□□□□ -0.94
CD44-225ENST00000527326 CENPBP07199 599 aaPredicted RBP9.17□□□□□ -0.94
CD44-225ENST00000527326 MKRN3Q13064 507 aaKnown RBP9.15□□□□□ -0.94
CD44-225ENST00000527326 PDAP1Q13442 181 aaKnown RBP9.15□□□□□ -0.94
CD44-225ENST00000527326 FAM163AQ96GL9 167 aaPredicted RBP9.14□□□□□ -0.95
CD44-225ENST00000527326 ZEB1P37275 1124 aaPredicted RBP9.13□□□□□ -0.95
CD44-225ENST00000527326 TRIM41Q8WV44 630 aa9.13□□□□□ -0.95
CD44-225ENST00000527326 SLAIN1Q8ND83 568 aa9.11□□□□□ -0.95
CD44-225ENST00000527326 ACIN1Q9UKV3 1341 aaKnown RBP9.1□□□□□ -0.95
CD44-225ENST00000527326 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.1□□□□□ -0.95
CD44-225ENST00000527326 POTEMA6NI47 508 aa9.09□□□□□ -0.95
CD44-225ENST00000527326 PCGF6Q9BYE7 350 aa9.09□□□□□ -0.95
CD44-225ENST00000527326 POTEGQ6S5H5 508 aa9.08□□□□□ -0.96
CD44-225ENST00000527326 CABP2Q9NPB3 220 aa9.08□□□□□ -0.96
CD44-225ENST00000527326 PDCD7Q8N8D1 485 aaKnown RBP9.07□□□□□ -0.96
CD44-225ENST00000527326 FAM9AQ8IZU1 332 aaPredicted RBP9.05□□□□□ -0.96
CD44-225ENST00000527326 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.05□□□□□ -0.96
CD44-225ENST00000527326 L3MBTL3Q96JM7 780 aaPredicted RBP9.04□□□□□ -0.96
CD44-225ENST00000527326 RIOK3O14730 519 aaKnown RBP9.02□□□□□ -0.97
CD44-225ENST00000527326 LCE2DQ5TA82 110 aaPredicted RBP9.02□□□□□ -0.97
CD44-225ENST00000527326 DCAF1Q9Y4B6 1507 aa9.01□□□□□ -0.97
CD44-225ENST00000527326 C3orf67Q6ZVT6 689 aa9.01□□□□□ -0.97
CD44-225ENST00000527326 CCDC180Q9P1Z9 1646 aa9.01□□□□□ -0.97
CD44-225ENST00000527326 DPY19L2Q6NUT2 758 aa9□□□□□ -0.97
CD44-225ENST00000527326 RNF25Q96BH1 459 aaPredicted RBP9□□□□□ -0.97
CD44-225ENST00000527326 EFCAB3Q8N7B9 438 aa8.99□□□□□ -0.97
CD44-225ENST00000527326 ILDR1Q86SU0 546 aaPredicted RBP8.98□□□□□ -0.97
CD44-225ENST00000527326 PLSCR2Q9NRY7 297 aa8.98□□□□□ -0.97
CD44-225ENST00000527326 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.97□□□□□ -0.97
CD44-225ENST00000527326 G3V3G9 751 aa8.97□□□□□ -0.97
CD44-225ENST00000527326 VGFO15240 615 aaPredicted RBP8.97□□□□□ -0.97
CD44-225ENST00000527326 ZFP91Q96JP5 570 aaPredicted RBP8.97□□□□□ -0.97
CD44-225ENST00000527326 GTF3C3Q9Y5Q9 886 aa8.96□□□□□ -0.98
CD44-225ENST00000527326 SNPHO15079 494 aa8.94□□□□□ -0.98
CD44-225ENST00000527326 ST18O60284 1047 aa8.94□□□□□ -0.98
CD44-225ENST00000527326 BOLA1Q9Y3E2 137 aa8.94□□□□□ -0.98
CD44-225ENST00000527326 MYO15BQ96JP2 1530 aa8.94□□□□□ -0.98
CD44-225ENST00000527326 ECM2O94769 699 aaPredicted RBP8.93□□□□□ -0.98
CD44-225ENST00000527326 NEUROD1Q13562 356 aa8.93□□□□□ -0.98
CD44-225ENST00000527326 ANP32EQ9BTT0 268 aa8.93□□□□□ -0.98
CD44-225ENST00000527326 PCDH10Q9P2E7 1040 aa8.93□□□□□ -0.98
CD44-225ENST00000527326 TAOK2Q9UL54 1235 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms