RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 HS6ST3Q8IZP7 471 aa10.76□□□□□ -0.69
CD44-220ENST00000525688 SPRYD3Q8NCJ5 442 aa10.76□□□□□ -0.69
CD44-220ENST00000525688 RNF25Q96BH1 459 aaPredicted RBP10.76□□□□□ -0.69
CD44-220ENST00000525688 FAM212AQ96EL1 285 aa10.76□□□□□ -0.69
CD44-220ENST00000525688 CFAP44Q96MT7 982 aa10.75□□□□□ -0.69
CD44-220ENST00000525688 DNAJC5Q9H3Z4 198 aa10.75□□□□□ -0.69
CD44-220ENST00000525688 CHRM1P11229 460 aaPredicted RBP10.73□□□□□ -0.69
CD44-220ENST00000525688 TAOK2Q9UL54 1235 aa10.72□□□□□ -0.69
CD44-220ENST00000525688 RIOK3O14730 519 aaKnown RBP10.71□□□□□ -0.69
CD44-220ENST00000525688 RASEFQ8IZ41 740 aa10.7□□□□□ -0.7
CD44-220ENST00000525688 KDM2AQ9Y2K7 1162 aa10.68□□□□□ -0.7
CD44-220ENST00000525688 VGFO15240 615 aaPredicted RBP10.64□□□□□ -0.71
CD44-220ENST00000525688 BCANQ96GW7 911 aa10.64□□□□□ -0.71
CD44-220ENST00000525688 SGIP1Q9BQI5 828 aa10.64□□□□□ -0.71
CD44-220ENST00000525688 TSHZ2Q9NRE2 1034 aa10.62□□□□□ -0.71
CD44-220ENST00000525688 NKX1-1Q15270 411 aaPredicted RBP10.58□□□□□ -0.72
CD44-220ENST00000525688 STK25O00506 426 aa10.56□□□□□ -0.72
CD44-220ENST00000525688 PYGBP11216 843 aa10.56□□□□□ -0.72
CD44-220ENST00000525688 FARP1Q9Y4F1 1045 aaPredicted RBP10.56□□□□□ -0.72
CD44-220ENST00000525688 CHADLQ6NUI6 762 aa10.55□□□□□ -0.72
CD44-220ENST00000525688 GTPBP6O43824 516 aaPredicted RBP10.54□□□□□ -0.72
CD44-220ENST00000525688 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.53□□□□□ -0.72
CD44-220ENST00000525688 ZFP91Q96JP5 570 aaPredicted RBP10.53□□□□□ -0.72
CD44-220ENST00000525688 FXR2P51116 673 aaKnown RBP eCLIP10.51□□□□□ -0.73
CD44-220ENST00000525688 BCL11BQ9C0K0 894 aaPredicted RBP10.5□□□□□ -0.73
CD44-220ENST00000525688 STK24Q9Y6E0 443 aa10.49□□□□□ -0.73
CD44-220ENST00000525688 PRKAR2AP13861 404 aaKnown RBP10.48□□□□□ -0.73
CD44-220ENST00000525688 TSPYL2Q9H2G4 693 aaPredicted RBP10.48□□□□□ -0.73
CD44-220ENST00000525688 RYDENQ9NUL5 291 aaKnown RBP10.48□□□□□ -0.73
CD44-220ENST00000525688 ZNF467Q7Z7K2 595 aaPredicted RBP10.47□□□□□ -0.73
CD44-220ENST00000525688 CCDC61Q9Y6R9 512 aa10.44□□□□□ -0.74
CD44-220ENST00000525688 PDAP1Q13442 181 aaKnown RBP10.4□□□□□ -0.74
CD44-220ENST00000525688 CHRDL2Q6WN34 429 aa10.39□□□□□ -0.75
CD44-220ENST00000525688 ZNF579Q8NAF0 562 aaKnown RBP10.39□□□□□ -0.75
CD44-220ENST00000525688 PIP4P2Q8N4L2 257 aa10.37□□□□□ -0.75
CD44-220ENST00000525688 PCDHB8Q9UN66 801 aa10.37□□□□□ -0.75
CD44-220ENST00000525688 PCDHB13Q9Y5F0 798 aa10.37□□□□□ -0.75
CD44-220ENST00000525688 PAK3O75914 559 aaPredicted RBP10.36□□□□□ -0.75
CD44-220ENST00000525688 PSEN1P49768 467 aa10.33□□□□□ -0.76
CD44-220ENST00000525688 PRKCSHP14314 528 aaPredicted RBP10.31□□□□□ -0.76
CD44-220ENST00000525688 KIF12Q96FN5 646 aa10.31□□□□□ -0.76
CD44-220ENST00000525688 NBR1Q14596 966 aa10.29□□□□□ -0.76
CD44-220ENST00000525688 IFNL1Q8IU54 200 aa10.29□□□□□ -0.76
CD44-220ENST00000525688 MAP3K13O43283 966 aa10.28□□□□□ -0.76
CD44-220ENST00000525688 MFRPQ9BY79 579 aa10.27□□□□□ -0.77
CD44-220ENST00000525688 TPRNQ4KMQ1 711 aa10.26□□□□□ -0.77
CD44-220ENST00000525688 SOX12O15370 315 aa10.22□□□□□ -0.77
CD44-220ENST00000525688 ZRANB1Q9UGI0 708 aa10.22□□□□□ -0.77
CD44-220ENST00000525688 CD44P16070 742 aaKnown RBP10.21□□□□□ -0.77
CD44-220ENST00000525688 CADPS2Q86UW7 1296 aa10.2□□□□□ -0.78
CD44-220ENST00000525688 NLRP6P59044 892 aa10.19□□□□□ -0.78
CD44-220ENST00000525688 EFCAB3Q8N7B9 438 aa10.19□□□□□ -0.78
CD44-220ENST00000525688 FBXO22Q8NEZ5 403 aa10.19□□□□□ -0.78
CD44-220ENST00000525688 P3H3Q8IVL6 736 aa10.18□□□□□ -0.78
CD44-220ENST00000525688 CABP2Q9NPB3 220 aa10.18□□□□□ -0.78
CD44-220ENST00000525688 PHF12Q96QT6 1004 aa10.16□□□□□ -0.78
CD44-220ENST00000525688 PPP1R37O75864 691 aa10.14□□□□□ -0.79
CD44-220ENST00000525688 WDR70Q9NW82 654 aa10.14□□□□□ -0.79
CD44-220ENST00000525688 PHF8Q9UPP1 1060 aa10.14□□□□□ -0.79
CD44-220ENST00000525688 C19orf67A6NJJ6 358 aa10.12□□□□□ -0.79
CD44-220ENST00000525688 KCNV2Q8TDN2 545 aa10.08□□□□□ -0.8
CD44-220ENST00000525688 TMEM106CQ9BVX2 250 aa10.07□□□□□ -0.8
CD44-220ENST00000525688 MS4A3Q96HJ5 214 aa10.06□□□□□ -0.8
CD44-220ENST00000525688 MS4A4AQ96JQ5 239 aa10.06□□□□□ -0.8
CD44-220ENST00000525688 TRPC6Q9Y210 931 aa10.04□□□□□ -0.8
CD44-220ENST00000525688 TIE1P35590 1138 aa10.03□□□□□ -0.8
CD44-220ENST00000525688 GOLGA2Q08379 1002 aa10.03□□□□□ -0.8
CD44-220ENST00000525688 ARHGEF1Q92888 912 aaKnown RBP10.03□□□□□ -0.8
CD44-220ENST00000525688 MKRN3Q13064 507 aaKnown RBP10.01□□□□□ -0.81
CD44-220ENST00000525688 E2F4Q16254 413 aa10.01□□□□□ -0.81
CD44-220ENST00000525688 ILDR1Q86SU0 546 aaPredicted RBP10□□□□□ -0.81
CD44-220ENST00000525688 NCKAP5LQ9HCH0 1330 aa10□□□□□ -0.81
CD44-220ENST00000525688 PDE4AP27815 886 aa9.99□□□□□ -0.81
CD44-220ENST00000525688 TTLL13PA6NNM8 815 aa9.98□□□□□ -0.81
CD44-220ENST00000525688 CLCN6P51797 869 aa9.98□□□□□ -0.81
CD44-220ENST00000525688 MFSD10Q14728 455 aa9.98□□□□□ -0.81
CD44-220ENST00000525688 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.97□□□□□ -0.81
CD44-220ENST00000525688 CRISPLD2Q9H0B8 497 aa9.97□□□□□ -0.81
CD44-220ENST00000525688 LARP6Q9BRS8 491 aaKnown RBP9.95□□□□□ -0.82
CD44-220ENST00000525688 BMP2KQ9NSY1 1161 aaPredicted RBP9.95□□□□□ -0.82
CD44-220ENST00000525688 ARIH1Q9Y4X5 557 aaPredicted RBP9.93□□□□□ -0.82
CD44-220ENST00000525688 GALR2O43603 387 aaPredicted RBP9.91□□□□□ -0.82
CD44-220ENST00000525688 LMOD2Q6P5Q4 547 aa9.91□□□□□ -0.82
CD44-220ENST00000525688 DDX27Q96GQ7 796 aaKnown RBP9.91□□□□□ -0.82
CD44-220ENST00000525688 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.91□□□□□ -0.82
CD44-220ENST00000525688 TULP1O00294 542 aaPredicted RBP9.9□□□□□ -0.82
CD44-220ENST00000525688 CAMK2BQ13554 666 aa9.9□□□□□ -0.82
CD44-220ENST00000525688 TRIM35Q9UPQ4 493 aa9.9□□□□□ -0.82
CD44-220ENST00000525688 TESPA1A2RU30 521 aaPredicted RBP9.88□□□□□ -0.83
CD44-220ENST00000525688 HAX1O00165 279 aa9.87□□□□□ -0.83
CD44-220ENST00000525688 GPHNQ9NQX3 736 aaPredicted RBP9.86□□□□□ -0.83
CD44-220ENST00000525688 SEMA3EO15041 775 aa9.85□□□□□ -0.83
CD44-220ENST00000525688 EVX2Q03828 476 aa9.85□□□□□ -0.83
CD44-220ENST00000525688 PDCD7Q8N8D1 485 aaKnown RBP9.83□□□□□ -0.84
CD44-220ENST00000525688 IER5LQ5T953 404 aa9.82□□□□□ -0.84
CD44-220ENST00000525688 ASTLQ6HA08 431 aaPredicted RBP9.82□□□□□ -0.84
CD44-220ENST00000525688 ATMINO43313 823 aaPredicted RBP9.81□□□□□ -0.84
CD44-220ENST00000525688 ATN1P54259 1190 aaPredicted RBP9.81□□□□□ -0.84
CD44-220ENST00000525688 IRX5P78411 483 aaPredicted RBP9.81□□□□□ -0.84
CD44-220ENST00000525688 PPP1R15BQ5SWA1 713 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms