RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 KLHL34Q8N239 644 aa11.41□□□□□ -0.58
CD44-219ENST00000525685 IFNLR1Q8IU57 520 aaPredicted RBP11.4□□□□□ -0.58
CD44-219ENST00000525685 GALR2O43603 387 aaPredicted RBP11.38□□□□□ -0.59
CD44-219ENST00000525685 FAM212AQ96EL1 285 aa11.36□□□□□ -0.59
CD44-219ENST00000525685 KIF12Q96FN5 646 aa11.34□□□□□ -0.59
CD44-219ENST00000525685 POTEIP0CG38 1075 aa11.32□□□□□ -0.6
CD44-219ENST00000525685 MS4A3Q96HJ5 214 aa11.32□□□□□ -0.6
CD44-219ENST00000525685 DCAF8Q5TAQ9 597 aa11.3□□□□□ -0.6
CD44-219ENST00000525685 SPOCK2Q92563 424 aa11.3□□□□□ -0.6
CD44-219ENST00000525685 MAP3K13O43283 966 aa11.29□□□□□ -0.6
CD44-219ENST00000525685 DCBLD2Q96PD2 775 aa11.28□□□□□ -0.6
CD44-219ENST00000525685 GSE1Q14687 1217 aa11.24□□□□□ -0.61
CD44-219ENST00000525685 SGIP1Q9BQI5 828 aa11.22□□□□□ -0.61
CD44-219ENST00000525685 PCDHB13Q9Y5F0 798 aa11.21□□□□□ -0.61
CD44-219ENST00000525685 PYGBP11216 843 aa11.2□□□□□ -0.62
CD44-219ENST00000525685 TRPC6Q9Y210 931 aa11.19□□□□□ -0.62
CD44-219ENST00000525685 ASTLQ6HA08 431 aaPredicted RBP11.17□□□□□ -0.62
CD44-219ENST00000525685 ATMINO43313 823 aaPredicted RBP11.16□□□□□ -0.62
CD44-219ENST00000525685 IFNL1Q8IU54 200 aa11.16□□□□□ -0.62
CD44-219ENST00000525685 CIZ1Q9ULV3 898 aaPredicted RBP11.16□□□□□ -0.62
CD44-219ENST00000525685 CHRM1P11229 460 aaPredicted RBP11.14□□□□□ -0.63
CD44-219ENST00000525685 TIE1P35590 1138 aa11.14□□□□□ -0.63
CD44-219ENST00000525685 PELP1Q8IZL8 1130 aaKnown RBP11.14□□□□□ -0.63
CD44-219ENST00000525685 BMP2KQ9NSY1 1161 aaPredicted RBP11.14□□□□□ -0.63
CD44-219ENST00000525685 ATN1P54259 1190 aaPredicted RBP11.1□□□□□ -0.63
CD44-219ENST00000525685 PCDHB8Q9UN66 801 aa11.09□□□□□ -0.63
CD44-219ENST00000525685 TTLL13PA6NNM8 815 aa11.08□□□□□ -0.64
CD44-219ENST00000525685 ZNF467Q7Z7K2 595 aaPredicted RBP11.06□□□□□ -0.64
CD44-219ENST00000525685 LHX8Q68G74 356 aa11.04□□□□□ -0.64
CD44-219ENST00000525685 TRIM41Q8WV44 630 aa11.04□□□□□ -0.64
CD44-219ENST00000525685 SLC39A7Q92504 469 aa11.04□□□□□ -0.64
CD44-219ENST00000525685 TMEM106CQ9BVX2 250 aa11.03□□□□□ -0.64
CD44-219ENST00000525685 C7P10643 843 aa11.02□□□□□ -0.65
CD44-219ENST00000525685 METRNQ9UJH8 293 aa11.02□□□□□ -0.65
CD44-219ENST00000525685 TRIM35Q9UPQ4 493 aa11.01□□□□□ -0.65
CD44-219ENST00000525685 POTEB2H3BUK9 544 aa10.96□□□□□ -0.65
CD44-219ENST00000525685 PSEN1P49768 467 aa10.95□□□□□ -0.66
CD44-219ENST00000525685 PDAP1Q13442 181 aaKnown RBP10.95□□□□□ -0.66
CD44-219ENST00000525685 POTEFA5A3E0 1075 aa10.94□□□□□ -0.66
CD44-219ENST00000525685 IER5LQ5T953 404 aa10.94□□□□□ -0.66
CD44-219ENST00000525685 RNF25Q96BH1 459 aaPredicted RBP10.92□□□□□ -0.66
CD44-219ENST00000525685 PKD2Q13563 968 aa10.91□□□□□ -0.66
CD44-219ENST00000525685 COLQQ9Y215 455 aaPredicted RBP10.9□□□□□ -0.66
CD44-219ENST00000525685 RIOK3O14730 519 aaKnown RBP10.89□□□□□ -0.67
CD44-219ENST00000525685 ECM2O94769 699 aaPredicted RBP10.87□□□□□ -0.67
CD44-219ENST00000525685 SEC24BO95487 1268 aa10.86□□□□□ -0.67
CD44-219ENST00000525685 POTEJP0CG39 1038 aa10.86□□□□□ -0.67
CD44-219ENST00000525685 IRX5P78411 483 aaPredicted RBP10.86□□□□□ -0.67
CD44-219ENST00000525685 OTUD5Q96G74 571 aa10.83□□□□□ -0.68
CD44-219ENST00000525685 VGFO15240 615 aaPredicted RBP10.82□□□□□ -0.68
CD44-219ENST00000525685 PLCG2P16885 1265 aa10.82□□□□□ -0.68
CD44-219ENST00000525685 GOLGA2Q08379 1002 aa10.81□□□□□ -0.68
CD44-219ENST00000525685 MKRN3Q13064 507 aaKnown RBP10.81□□□□□ -0.68
CD44-219ENST00000525685 CABP2Q9NPB3 220 aa10.81□□□□□ -0.68
CD44-219ENST00000525685 OCEL1Q9H607 264 aa10.8□□□□□ -0.68
CD44-219ENST00000525685 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.79□□□□□ -0.68
CD44-219ENST00000525685 RGL2O15211 777 aa10.79□□□□□ -0.68
CD44-219ENST00000525685 ZFP91Q96JP5 570 aaPredicted RBP10.79□□□□□ -0.68
CD44-219ENST00000525685 MAMSTRQ6ZN01 415 aa10.77□□□□□ -0.69
CD44-219ENST00000525685 PDCD7Q8N8D1 485 aaKnown RBP10.76□□□□□ -0.69
CD44-219ENST00000525685 ILDR1Q86SU0 546 aaPredicted RBP10.75□□□□□ -0.69
CD44-219ENST00000525685 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.75□□□□□ -0.69
CD44-219ENST00000525685 TAOK2Q9UL54 1235 aa10.75□□□□□ -0.69
CD44-219ENST00000525685 EFCAB3Q8N7B9 438 aa10.72□□□□□ -0.69
CD44-219ENST00000525685 SCUBE2Q9NQ36 999 aa10.72□□□□□ -0.69
CD44-219ENST00000525685 BCL11BQ9C0K0 894 aaPredicted RBP10.7□□□□□ -0.7
CD44-219ENST00000525685 STK25O00506 426 aa10.67□□□□□ -0.7
CD44-219ENST00000525685 STK24Q9Y6E0 443 aa10.67□□□□□ -0.7
CD44-219ENST00000525685 DPY19L2Q6NUT2 758 aa10.66□□□□□ -0.7
CD44-219ENST00000525685 SOX12O15370 315 aa10.65□□□□□ -0.7
CD44-219ENST00000525685 L3MBTL3Q96JM7 780 aaPredicted RBP10.64□□□□□ -0.71
CD44-219ENST00000525685 PHF8Q9UPP1 1060 aa10.62□□□□□ -0.71
CD44-219ENST00000525685 MS4A4AQ96JQ5 239 aa10.6□□□□□ -0.71
CD44-219ENST00000525685 SLAIN1Q8ND83 568 aa10.58□□□□□ -0.72
CD44-219ENST00000525685 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.58□□□□□ -0.72
CD44-219ENST00000525685 FBXO22Q8NEZ5 403 aa10.57□□□□□ -0.72
CD44-219ENST00000525685 MFRPQ9BY79 579 aa10.57□□□□□ -0.72
CD44-219ENST00000525685 BOLA1Q9Y3E2 137 aa10.57□□□□□ -0.72
CD44-219ENST00000525685 NLRP6P59044 892 aa10.56□□□□□ -0.72
CD44-219ENST00000525685 C3orf67Q6ZVT6 689 aa10.56□□□□□ -0.72
CD44-219ENST00000525685 HS6ST3Q8IZP7 471 aa10.56□□□□□ -0.72
CD44-219ENST00000525685 TMEM121BQ9BXQ6 578 aaPredicted RBP10.54□□□□□ -0.72
CD44-219ENST00000525685 G3V3G9 751 aa10.53□□□□□ -0.72
CD44-219ENST00000525685 CHGAP10645 457 aaKnown RBP10.53□□□□□ -0.72
CD44-219ENST00000525685 MICALL2Q8IY33 904 aa10.5□□□□□ -0.73
CD44-219ENST00000525685 AMER1Q5JTC6 1135 aaPredicted RBP10.48□□□□□ -0.73
CD44-219ENST00000525685 DNAJC5Q9H3Z4 198 aa10.48□□□□□ -0.73
CD44-219ENST00000525685 LCE2DQ5TA82 110 aaPredicted RBP10.46□□□□□ -0.73
CD44-219ENST00000525685 FAM163AQ96GL9 167 aaPredicted RBP10.46□□□□□ -0.73
CD44-219ENST00000525685 RTN4Q9NQC3 1192 aaKnown RBP10.45□□□□□ -0.74
CD44-219ENST00000525685 NKX1-1Q15270 411 aaPredicted RBP10.43□□□□□ -0.74
CD44-219ENST00000525685 DCAF8L2P0C7V8 631 aa10.42□□□□□ -0.74
CD44-219ENST00000525685 TMEM92Q6UXU6 159 aa10.41□□□□□ -0.74
CD44-219ENST00000525685 SNPHO15079 494 aa10.4□□□□□ -0.74
CD44-219ENST00000525685 PPP1R37O75864 691 aa10.4□□□□□ -0.74
CD44-219ENST00000525685 ST18O60284 1047 aa10.37□□□□□ -0.75
CD44-219ENST00000525685 POTEMA6NI47 508 aa10.36□□□□□ -0.75
CD44-219ENST00000525685 POTEGQ6S5H5 508 aa10.36□□□□□ -0.75
CD44-219ENST00000525685 HOXB3P14651 431 aaPredicted RBP10.33□□□□□ -0.76
CD44-219ENST00000525685 RYDENQ9NUL5 291 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms