RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 ZNF579Q8NAF0 562 aaKnown RBP7.51□□□□□ -1.21
CD44-216ENST00000525293 PHF12Q96QT6 1004 aa7.5□□□□□ -1.21
CD44-216ENST00000525293 CLCN6P51797 869 aa7.46□□□□□ -1.22
CD44-216ENST00000525293 CCDC61Q9Y6R9 512 aa7.46□□□□□ -1.22
CD44-216ENST00000525293 DCAF8Q5TAQ9 597 aa7.45□□□□□ -1.22
CD44-216ENST00000525293 FAM212AQ96EL1 285 aa7.45□□□□□ -1.22
CD44-216ENST00000525293 SPOCK2Q92563 424 aa7.44□□□□□ -1.22
CD44-216ENST00000525293 GALR2O43603 387 aaPredicted RBP7.43□□□□□ -1.22
CD44-216ENST00000525293 KIF12Q96FN5 646 aa7.41□□□□□ -1.22
CD44-216ENST00000525293 MS4A3Q96HJ5 214 aa7.4□□□□□ -1.22
CD44-216ENST00000525293 PLSCR2Q9NRY7 297 aa7.4□□□□□ -1.22
CD44-216ENST00000525293 MAP3K13O43283 966 aa7.39□□□□□ -1.23
CD44-216ENST00000525293 GSE1Q14687 1217 aa7.38□□□□□ -1.23
CD44-216ENST00000525293 DCBLD2Q96PD2 775 aa7.38□□□□□ -1.23
CD44-216ENST00000525293 CIZ1Q9ULV3 898 aaPredicted RBP7.38□□□□□ -1.23
CD44-216ENST00000525293 PYGBP11216 843 aa7.37□□□□□ -1.23
CD44-216ENST00000525293 PCDHB13Q9Y5F0 798 aa7.35□□□□□ -1.23
CD44-216ENST00000525293 SGIP1Q9BQI5 828 aa7.32□□□□□ -1.24
CD44-216ENST00000525293 TRPC6Q9Y210 931 aa7.32□□□□□ -1.24
CD44-216ENST00000525293 IFNL1Q8IU54 200 aa7.31□□□□□ -1.24
CD44-216ENST00000525293 OTUD5Q96G74 571 aa7.3□□□□□ -1.24
CD44-216ENST00000525293 POTEB2H3BUK9 544 aa7.29□□□□□ -1.24
CD44-216ENST00000525293 CHRM1P11229 460 aaPredicted RBP7.29□□□□□ -1.24
CD44-216ENST00000525293 PCDHB8Q9UN66 801 aa7.29□□□□□ -1.24
CD44-216ENST00000525293 ATMINO43313 823 aaPredicted RBP7.28□□□□□ -1.24
CD44-216ENST00000525293 ASTLQ6HA08 431 aaPredicted RBP7.27□□□□□ -1.25
CD44-216ENST00000525293 PELP1Q8IZL8 1130 aaKnown RBP7.27□□□□□ -1.25
CD44-216ENST00000525293 BMP2KQ9NSY1 1161 aaPredicted RBP7.27□□□□□ -1.25
CD44-216ENST00000525293 TIE1P35590 1138 aa7.26□□□□□ -1.25
CD44-216ENST00000525293 ATN1P54259 1190 aaPredicted RBP7.26□□□□□ -1.25
CD44-216ENST00000525293 TTLL13PA6NNM8 815 aa7.24□□□□□ -1.25
CD44-216ENST00000525293 ZNF467Q7Z7K2 595 aaPredicted RBP7.24□□□□□ -1.25
CD44-216ENST00000525293 TRIM41Q8WV44 630 aa7.24□□□□□ -1.25
CD44-216ENST00000525293 TMEM106CQ9BVX2 250 aa7.23□□□□□ -1.25
CD44-216ENST00000525293 POTEMA6NI47 508 aa7.21□□□□□ -1.26
CD44-216ENST00000525293 TRIM35Q9UPQ4 493 aa7.2□□□□□ -1.26
CD44-216ENST00000525293 ECM2O94769 699 aaPredicted RBP7.19□□□□□ -1.26
CD44-216ENST00000525293 PSEN1P49768 467 aa7.19□□□□□ -1.26
CD44-216ENST00000525293 PKD2Q13563 968 aa7.19□□□□□ -1.26
CD44-216ENST00000525293 POTEGQ6S5H5 508 aa7.19□□□□□ -1.26
CD44-216ENST00000525293 SLC39A7Q92504 469 aa7.19□□□□□ -1.26
CD44-216ENST00000525293 METRNQ9UJH8 293 aa7.19□□□□□ -1.26
CD44-216ENST00000525293 C7P10643 843 aa7.18□□□□□ -1.26
CD44-216ENST00000525293 RNF25Q96BH1 459 aaPredicted RBP7.17□□□□□ -1.26
CD44-216ENST00000525293 PDAP1Q13442 181 aaKnown RBP7.16□□□□□ -1.26
CD44-216ENST00000525293 RIOK3O14730 519 aaKnown RBP7.15□□□□□ -1.26
CD44-216ENST00000525293 POTEJP0CG39 1038 aa7.14□□□□□ -1.27
CD44-216ENST00000525293 SEC24BO95487 1268 aa7.13□□□□□ -1.27
CD44-216ENST00000525293 GOLGA2Q08379 1002 aa7.13□□□□□ -1.27
CD44-216ENST00000525293 POTEFA5A3E0 1075 aa7.12□□□□□ -1.27
CD44-216ENST00000525293 RGL2O15211 777 aa7.12□□□□□ -1.27
CD44-216ENST00000525293 IER5LQ5T953 404 aa7.12□□□□□ -1.27
CD44-216ENST00000525293 COLQQ9Y215 455 aaPredicted RBP7.12□□□□□ -1.27
CD44-216ENST00000525293 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.11□□□□□ -1.27
CD44-216ENST00000525293 VGFO15240 615 aaPredicted RBP7.11□□□□□ -1.27
CD44-216ENST00000525293 ZFP91Q96JP5 570 aaPredicted RBP7.11□□□□□ -1.27
CD44-216ENST00000525293 CABP2Q9NPB3 220 aa7.11□□□□□ -1.27
CD44-216ENST00000525293 MKRN3Q13064 507 aaKnown RBP7.1□□□□□ -1.27
CD44-216ENST00000525293 LCE2DQ5TA82 110 aaPredicted RBP7.1□□□□□ -1.27
CD44-216ENST00000525293 IRX5P78411 483 aaPredicted RBP7.09□□□□□ -1.27
CD44-216ENST00000525293 PLCG2P16885 1265 aa7.08□□□□□ -1.28
CD44-216ENST00000525293 PCDH10Q9P2E7 1040 aa7.08□□□□□ -1.28
CD44-216ENST00000525293 TAOK2Q9UL54 1235 aa7.08□□□□□ -1.28
CD44-216ENST00000525293 OCEL1Q9H607 264 aa7.07□□□□□ -1.28
CD44-216ENST00000525293 EFCAB3Q8N7B9 438 aa7.05□□□□□ -1.28
CD44-216ENST00000525293 BCL11BQ9C0K0 894 aaPredicted RBP7.05□□□□□ -1.28
CD44-216ENST00000525293 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.05□□□□□ -1.28
CD44-216ENST00000525293 STK25O00506 426 aa7.04□□□□□ -1.28
CD44-216ENST00000525293 MAMSTRQ6ZN01 415 aa7.04□□□□□ -1.28
CD44-216ENST00000525293 STK24Q9Y6E0 443 aa7.04□□□□□ -1.28
CD44-216ENST00000525293 PDCD7Q8N8D1 485 aaKnown RBP7.02□□□□□ -1.29
CD44-216ENST00000525293 FAM163AQ96GL9 167 aaPredicted RBP7.01□□□□□ -1.29
CD44-216ENST00000525293 SCUBE2Q9NQ36 999 aa7□□□□□ -1.29
CD44-216ENST00000525293 SOX12O15370 315 aa6.99□□□□□ -1.29
CD44-216ENST00000525293 DPY19L2Q6NUT2 758 aa6.99□□□□□ -1.29
CD44-216ENST00000525293 ILDR1Q86SU0 546 aaPredicted RBP6.99□□□□□ -1.29
CD44-216ENST00000525293 PHF8Q9UPP1 1060 aa6.98□□□□□ -1.29
CD44-216ENST00000525293 CHGAP10645 457 aaKnown RBP6.97□□□□□ -1.29
CD44-216ENST00000525293 L3MBTL3Q96JM7 780 aaPredicted RBP6.97□□□□□ -1.29
CD44-216ENST00000525293 DCAF8L2P0C7V8 631 aa6.96□□□□□ -1.3
CD44-216ENST00000525293 AMER1Q5JTC6 1135 aaPredicted RBP6.96□□□□□ -1.3
CD44-216ENST00000525293 RTN4Q9NQC3 1192 aaKnown RBP6.96□□□□□ -1.3
CD44-216ENST00000525293 NLRP6P59044 892 aa6.94□□□□□ -1.3
CD44-216ENST00000525293 HS6ST3Q8IZP7 471 aa6.94□□□□□ -1.3
CD44-216ENST00000525293 MS4A4AQ96JQ5 239 aa6.94□□□□□ -1.3
CD44-216ENST00000525293 MFRPQ9BY79 579 aa6.94□□□□□ -1.3
CD44-216ENST00000525293 G3V3G9 751 aa6.93□□□□□ -1.3
CD44-216ENST00000525293 BOLA1Q9Y3E2 137 aa6.93□□□□□ -1.3
CD44-216ENST00000525293 C3orf67Q6ZVT6 689 aa6.92□□□□□ -1.3
CD44-216ENST00000525293 SLAIN1Q8ND83 568 aa6.92□□□□□ -1.3
CD44-216ENST00000525293 FBXO22Q8NEZ5 403 aa6.92□□□□□ -1.3
CD44-216ENST00000525293 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.92□□□□□ -1.3
CD44-216ENST00000525293 CDAN1Q8IWY9 1227 aa6.88□□□□□ -1.31
CD44-216ENST00000525293 MICALL2Q8IY33 904 aa6.88□□□□□ -1.31
CD44-216ENST00000525293 TMEM121BQ9BXQ6 578 aaPredicted RBP6.88□□□□□ -1.31
CD44-216ENST00000525293 NKX1-1Q15270 411 aaPredicted RBP6.86□□□□□ -1.31
CD44-216ENST00000525293 PPP1R37O75864 691 aa6.85□□□□□ -1.31
CD44-216ENST00000525293 DNAJC5Q9H3Z4 198 aa6.85□□□□□ -1.31
CD44-216ENST00000525293 ST18O60284 1047 aa6.81□□□□□ -1.32
CD44-216ENST00000525293 TMEM92Q6UXU6 159 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms