RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CHRM1P11229 460 aaPredicted RBP11.85□□□□□ -0.51
CD44-215ENST00000525241 CD44P16070 742 aaKnown RBP11.85□□□□□ -0.51
CD44-215ENST00000525241 CCDC61Q9Y6R9 512 aa11.85□□□□□ -0.51
CD44-215ENST00000525241 C19orf67A6NJJ6 358 aa11.84□□□□□ -0.51
CD44-215ENST00000525241 PAK3O75914 559 aaPredicted RBP11.83□□□□□ -0.52
CD44-215ENST00000525241 PYGBP11216 843 aa11.83□□□□□ -0.52
CD44-215ENST00000525241 POTEHQ6S545 545 aa11.8□□□□□ -0.52
CD44-215ENST00000525241 RNF25Q96BH1 459 aaPredicted RBP11.8□□□□□ -0.52
CD44-215ENST00000525241 ZRANB1Q9UGI0 708 aa11.8□□□□□ -0.52
CD44-215ENST00000525241 HAX1O00165 279 aa11.76□□□□□ -0.53
CD44-215ENST00000525241 DCAF8L2P0C7V8 631 aa11.75□□□□□ -0.53
CD44-215ENST00000525241 EVX2Q03828 476 aa11.73□□□□□ -0.53
CD44-215ENST00000525241 KIF12Q96FN5 646 aa11.73□□□□□ -0.53
CD44-215ENST00000525241 RIOK3O14730 519 aaKnown RBP11.72□□□□□ -0.53
CD44-215ENST00000525241 ZNF579Q8NAF0 562 aaKnown RBP11.72□□□□□ -0.53
CD44-215ENST00000525241 PHF12Q96QT6 1004 aa11.72□□□□□ -0.53
CD44-215ENST00000525241 MAP3K13O43283 966 aa11.7□□□□□ -0.54
CD44-215ENST00000525241 SGIP1Q9BQI5 828 aa11.67□□□□□ -0.54
CD44-215ENST00000525241 ZNF467Q7Z7K2 595 aaPredicted RBP11.66□□□□□ -0.54
CD44-215ENST00000525241 PCDHB8Q9UN66 801 aa11.66□□□□□ -0.54
CD44-215ENST00000525241 PCDHB13Q9Y5F0 798 aa11.66□□□□□ -0.54
CD44-215ENST00000525241 VGFO15240 615 aaPredicted RBP11.65□□□□□ -0.54
CD44-215ENST00000525241 IFNL1Q8IU54 200 aa11.64□□□□□ -0.55
CD44-215ENST00000525241 TAOK2Q9UL54 1235 aa11.63□□□□□ -0.55
CD44-215ENST00000525241 CHGAP10645 457 aaKnown RBP11.61□□□□□ -0.55
CD44-215ENST00000525241 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.59□□□□□ -0.55
CD44-215ENST00000525241 HS6ST3Q8IZP7 471 aa11.59□□□□□ -0.55
CD44-215ENST00000525241 MS4A3Q96HJ5 214 aa11.59□□□□□ -0.55
CD44-215ENST00000525241 ZFP91Q96JP5 570 aaPredicted RBP11.59□□□□□ -0.55
CD44-215ENST00000525241 PDAP1Q13442 181 aaKnown RBP11.57□□□□□ -0.56
CD44-215ENST00000525241 STK25O00506 426 aa11.55□□□□□ -0.56
CD44-215ENST00000525241 PSEN1P49768 467 aa11.55□□□□□ -0.56
CD44-215ENST00000525241 GALR2O43603 387 aaPredicted RBP11.53□□□□□ -0.56
CD44-215ENST00000525241 CLCN6P51797 869 aa11.53□□□□□ -0.56
CD44-215ENST00000525241 BBXQ8WY36 941 aaPredicted RBP11.53□□□□□ -0.56
CD44-215ENST00000525241 BCL11BQ9C0K0 894 aaPredicted RBP11.53□□□□□ -0.56
CD44-215ENST00000525241 TRPC6Q9Y210 931 aa11.53□□□□□ -0.56
CD44-215ENST00000525241 DNAJC5Q9H3Z4 198 aa11.51□□□□□ -0.57
CD44-215ENST00000525241 STK24Q9Y6E0 443 aa11.5□□□□□ -0.57
CD44-215ENST00000525241 GABBR2O75899 941 aa11.48□□□□□ -0.57
CD44-215ENST00000525241 NKX1-1Q15270 411 aaPredicted RBP11.45□□□□□ -0.58
CD44-215ENST00000525241 TIE1P35590 1138 aa11.44□□□□□ -0.58
CD44-215ENST00000525241 TMEM106CQ9BVX2 250 aa11.44□□□□□ -0.58
CD44-215ENST00000525241 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.44□□□□□ -0.58
CD44-215ENST00000525241 PLCB2Q00722 1185 aa11.42□□□□□ -0.58
CD44-215ENST00000525241 BMP2KQ9NSY1 1161 aaPredicted RBP11.42□□□□□ -0.58
CD44-215ENST00000525241 SP7Q8TDD2 431 aaPredicted RBP11.41□□□□□ -0.58
CD44-215ENST00000525241 TTLL13PA6NNM8 815 aa11.4□□□□□ -0.58
CD44-215ENST00000525241 CABP2Q9NPB3 220 aa11.4□□□□□ -0.58
CD44-215ENST00000525241 PAXIP1Q6ZW49 1069 aaPredicted RBP11.37□□□□□ -0.59
CD44-215ENST00000525241 EFCAB3Q8N7B9 438 aa11.37□□□□□ -0.59
CD44-215ENST00000525241 SPRYD3Q8NCJ5 442 aa11.36□□□□□ -0.59
CD44-215ENST00000525241 GTPBP6O43824 516 aaPredicted RBP11.35□□□□□ -0.59
CD44-215ENST00000525241 CFAP44Q96MT7 982 aa11.35□□□□□ -0.59
CD44-215ENST00000525241 ATMINO43313 823 aaPredicted RBP11.34□□□□□ -0.59
CD44-215ENST00000525241 ASTLQ6HA08 431 aaPredicted RBP11.34□□□□□ -0.59
CD44-215ENST00000525241 ATN1P54259 1190 aaPredicted RBP11.33□□□□□ -0.6
CD44-215ENST00000525241 MFRPQ9BY79 579 aa11.32□□□□□ -0.6
CD44-215ENST00000525241 TRIM35Q9UPQ4 493 aa11.32□□□□□ -0.6
CD44-215ENST00000525241 SOX12O15370 315 aa11.31□□□□□ -0.6
CD44-215ENST00000525241 GOLGA2Q08379 1002 aa11.3□□□□□ -0.6
CD44-215ENST00000525241 SLC24A1O60721 1099 aa11.29□□□□□ -0.6
CD44-215ENST00000525241 DCBLD2Q96PD2 775 aa11.29□□□□□ -0.6
CD44-215ENST00000525241 FBXO22Q8NEZ5 403 aa11.28□□□□□ -0.6
CD44-215ENST00000525241 PHF8Q9UPP1 1060 aa11.28□□□□□ -0.6
CD44-215ENST00000525241 POTEIP0CG38 1075 aa11.27□□□□□ -0.61
CD44-215ENST00000525241 MKRN3Q13064 507 aaKnown RBP11.27□□□□□ -0.61
CD44-215ENST00000525241 RYDENQ9NUL5 291 aaKnown RBP11.27□□□□□ -0.61
CD44-215ENST00000525241 PELP1Q8IZL8 1130 aaKnown RBP11.26□□□□□ -0.61
CD44-215ENST00000525241 NLRP6P59044 892 aa11.25□□□□□ -0.61
CD44-215ENST00000525241 ILDR1Q86SU0 546 aaPredicted RBP11.23□□□□□ -0.61
CD44-215ENST00000525241 HAP1P54257 671 aaPredicted RBP11.22□□□□□ -0.61
CD44-215ENST00000525241 MS4A4AQ96JQ5 239 aa11.22□□□□□ -0.61
CD44-215ENST00000525241 IER5LQ5T953 404 aa11.21□□□□□ -0.61
CD44-215ENST00000525241 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.62
CD44-215ENST00000525241 PPP1R37O75864 691 aa11.19□□□□□ -0.62
CD44-215ENST00000525241 TSHZ2Q9NRE2 1034 aa11.19□□□□□ -0.62
CD44-215ENST00000525241 IRX5P78411 483 aaPredicted RBP11.18□□□□□ -0.62
CD44-215ENST00000525241 PDCD7Q8N8D1 485 aaKnown RBP11.15□□□□□ -0.62
CD44-215ENST00000525241 SLC39A7Q92504 469 aa11.15□□□□□ -0.62
CD44-215ENST00000525241 OCEL1Q9H607 264 aa11.14□□□□□ -0.63
CD44-215ENST00000525241 C7P10643 843 aa11.13□□□□□ -0.63
CD44-215ENST00000525241 DPY19L2Q6NUT2 758 aa11.13□□□□□ -0.63
CD44-215ENST00000525241 COLQQ9Y215 455 aaPredicted RBP11.12□□□□□ -0.63
CD44-215ENST00000525241 POTEFA5A3E0 1075 aa11.11□□□□□ -0.63
CD44-215ENST00000525241 METRNQ9UJH8 293 aa11.11□□□□□ -0.63
CD44-215ENST00000525241 PLCG2P16885 1265 aa11.09□□□□□ -0.63
CD44-215ENST00000525241 SEC24BO95487 1268 aa11.08□□□□□ -0.64
CD44-215ENST00000525241 VSIG10Q8N0Z9 540 aa11.07□□□□□ -0.64
CD44-215ENST00000525241 KDM2AQ9Y2K7 1162 aa11.07□□□□□ -0.64
CD44-215ENST00000525241 CADPS2Q86UW7 1296 aa11.06□□□□□ -0.64
CD44-215ENST00000525241 MICALL2Q8IY33 904 aa11.01□□□□□ -0.65
CD44-215ENST00000525241 TMEM121BQ9BXQ6 578 aaPredicted RBP11.01□□□□□ -0.65
CD44-215ENST00000525241 BOLA1Q9Y3E2 137 aa11□□□□□ -0.65
CD44-215ENST00000525241 L3MBTL3Q96JM7 780 aaPredicted RBP10.99□□□□□ -0.65
CD44-215ENST00000525241 NCKAP5LQ9HCH0 1330 aa10.94□□□□□ -0.66
CD44-215ENST00000525241 G3V3G9 751 aa10.94□□□□□ -0.66
CD44-215ENST00000525241 CRISPLD2Q9H0B8 497 aa10.93□□□□□ -0.66
CD44-215ENST00000525241 POTEB2H3BUK9 544 aa10.92□□□□□ -0.66
CD44-215ENST00000525241 POTEJP0CG39 1038 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms