RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 MKRN4PQ13434 485 aaPredicted RBP10.2□□□□□ -0.78
USP47-204ENST00000525078 KLHL34Q8N239 644 aa10.2□□□□□ -0.78
USP47-204ENST00000525078 SPOCK2Q92563 424 aa10.18□□□□□ -0.78
USP47-204ENST00000525078 TMEM132AQ24JP5 1023 aa10.17□□□□□ -0.78
USP47-204ENST00000525078 C14orf37Q86TY3 774 aa10.17□□□□□ -0.78
USP47-204ENST00000525078 PRKAR2AP13861 404 aaKnown RBP10.12□□□□□ -0.79
USP47-204ENST00000525078 SPDYE1Q8NFV5 336 aaPredicted RBP10.12□□□□□ -0.79
USP47-204ENST00000525078 RGL2O15211 777 aa10.11□□□□□ -0.79
USP47-204ENST00000525078 SSUH2Q9Y2M2 353 aa10.11□□□□□ -0.79
USP47-204ENST00000525078 ZNF692Q9BU19 519 aaPredicted RBP10.1□□□□□ -0.79
USP47-204ENST00000525078 CLEC11AQ9Y240 323 aa10.1□□□□□ -0.79
USP47-204ENST00000525078 CHGAP10645 457 aaKnown RBP10.07□□□□□ -0.8
USP47-204ENST00000525078 DNAJC5Q9H3Z4 198 aa10.06□□□□□ -0.8
USP47-204ENST00000525078 C19orf67A6NJJ6 358 aa10.04□□□□□ -0.8
USP47-204ENST00000525078 RANGAP1P46060 587 aaPredicted RBP9.98□□□□□ -0.81
USP47-204ENST00000525078 CHADLQ6NUI6 762 aa9.97□□□□□ -0.81
USP47-204ENST00000525078 GABBR2O75899 941 aa9.95□□□□□ -0.82
USP47-204ENST00000525078 PABPN1Q86U42 306 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP47-204ENST00000525078 PLCD3Q8N3E9 789 aa9.93□□□□□ -0.82
USP47-204ENST00000525078 PRR29P0C7W0 189 aa9.92□□□□□ -0.82
USP47-204ENST00000525078 CIZ1Q9ULV3 898 aaPredicted RBP9.91□□□□□ -0.82
USP47-204ENST00000525078 PODXL2Q9NZ53 605 aa9.88□□□□□ -0.83
USP47-204ENST00000525078 SUPT5HO00267 1087 aaKnown RBP9.86□□□□□ -0.83
USP47-204ENST00000525078 HS6ST3Q8IZP7 471 aa9.86□□□□□ -0.83
USP47-204ENST00000525078 STAG3Q9UJ98 1225 aa9.86□□□□□ -0.83
USP47-204ENST00000525078 LHX8Q68G74 356 aa9.85□□□□□ -0.83
USP47-204ENST00000525078 MIER1Q8N108 512 aa9.82□□□□□ -0.84
USP47-204ENST00000525078 FARP1Q9Y4F1 1045 aaPredicted RBP9.8□□□□□ -0.84
USP47-204ENST00000525078 POTEIP0CG38 1075 aa9.77□□□□□ -0.85
USP47-204ENST00000525078 CD44P16070 742 aaKnown RBP9.77□□□□□ -0.85
USP47-204ENST00000525078 TRIM41Q8WV44 630 aa9.77□□□□□ -0.85
USP47-204ENST00000525078 PLEKHG5O94827 1062 aa9.72□□□□□ -0.85
USP47-204ENST00000525078 ZBTB47Q9UFB7 747 aaPredicted RBP9.71□□□□□ -0.86
USP47-204ENST00000525078 GTPBP6O43824 516 aaPredicted RBP9.7□□□□□ -0.86
USP47-204ENST00000525078 BRPF1P55201 1214 aaPredicted RBP9.7□□□□□ -0.86
USP47-204ENST00000525078 NKX1-1Q15270 411 aaPredicted RBP9.7□□□□□ -0.86
USP47-204ENST00000525078 P3H3Q8IVL6 736 aa9.7□□□□□ -0.86
USP47-204ENST00000525078 LMOD2Q6P5Q4 547 aa9.69□□□□□ -0.86
USP47-204ENST00000525078 CLCN6P51797 869 aa9.68□□□□□ -0.86
USP47-204ENST00000525078 PLSCR2Q9NRY7 297 aa9.68□□□□□ -0.86
USP47-204ENST00000525078 CREBZFQ9NS37 354 aa9.66□□□□□ -0.86
USP47-204ENST00000525078 NEUROD2Q15784 382 aa9.65□□□□□ -0.86
USP47-204ENST00000525078 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP47-204ENST00000525078 UBTFP17480 764 aaKnown RBP9.62□□□□□ -0.87
USP47-204ENST00000525078 ZNF579Q8NAF0 562 aaKnown RBP9.62□□□□□ -0.87
USP47-204ENST00000525078 RNF25Q96BH1 459 aaPredicted RBP9.62□□□□□ -0.87
USP47-204ENST00000525078 ZRANB1Q9UGI0 708 aa9.61□□□□□ -0.87
USP47-204ENST00000525078 STK25O00506 426 aa9.6□□□□□ -0.87
USP47-204ENST00000525078 NPM2Q86SE8 214 aaKnown RBP9.6□□□□□ -0.87
USP47-204ENST00000525078 RIOK3O14730 519 aaKnown RBP9.59□□□□□ -0.87
USP47-204ENST00000525078 GSE1Q14687 1217 aa9.59□□□□□ -0.87
USP47-204ENST00000525078 DCBLD2Q96PD2 775 aa9.59□□□□□ -0.87
USP47-204ENST00000525078 TRIM26Q12899 539 aaPredicted RBP9.58□□□□□ -0.88
USP47-204ENST00000525078 RYDENQ9NUL5 291 aaKnown RBP9.58□□□□□ -0.88
USP47-204ENST00000525078 WDR70Q9NW82 654 aa9.58□□□□□ -0.88
USP47-204ENST00000525078 GALR2O43603 387 aaPredicted RBP9.53□□□□□ -0.88
USP47-204ENST00000525078 KCNV2Q8TDN2 545 aa9.52□□□□□ -0.89
USP47-204ENST00000525078 VGFO15240 615 aaPredicted RBP9.5□□□□□ -0.89
USP47-204ENST00000525078 ZC3H15Q8WU90 426 aaKnown RBP9.5□□□□□ -0.89
USP47-204ENST00000525078 MNX1P50219 401 aaPredicted RBP9.49□□□□□ -0.89
USP47-204ENST00000525078 SLC24A3Q9HC58 644 aa9.49□□□□□ -0.89
USP47-204ENST00000525078 DCAF8Q5TAQ9 597 aa9.48□□□□□ -0.89
USP47-204ENST00000525078 STK24Q9Y6E0 443 aa9.48□□□□□ -0.89
USP47-204ENST00000525078 PHF12Q96QT6 1004 aa9.47□□□□□ -0.89
USP47-204ENST00000525078 ZMYND15Q9H091 742 aa9.46□□□□□ -0.9
USP47-204ENST00000525078 RSPH6AQ9H0K4 717 aa9.45□□□□□ -0.9
USP47-204ENST00000525078 POTEB2H3BUK9 544 aa9.44□□□□□ -0.9
USP47-204ENST00000525078 HRCP23327 699 aa9.44□□□□□ -0.9
USP47-204ENST00000525078 OTUD5Q96G74 571 aa9.44□□□□□ -0.9
USP47-204ENST00000525078 ARID3AQ99856 593 aa9.44□□□□□ -0.9
USP47-204ENST00000525078 BCL11BQ9C0K0 894 aaPredicted RBP9.44□□□□□ -0.9
USP47-204ENST00000525078 PAK3O75914 559 aaPredicted RBP9.42□□□□□ -0.9
USP47-204ENST00000525078 PELP1Q8IZL8 1130 aaKnown RBP9.42□□□□□ -0.9
USP47-204ENST00000525078 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.39□□□□□ -0.91
USP47-204ENST00000525078 ZFP91Q96JP5 570 aaPredicted RBP9.39□□□□□ -0.91
USP47-204ENST00000525078 NUBP1P53384 320 aa9.37□□□□□ -0.91
USP47-204ENST00000525078 CADPS2Q86UW7 1296 aa9.37□□□□□ -0.91
USP47-204ENST00000525078 ARHGEF1Q92888 912 aaKnown RBP9.35□□□□□ -0.91
USP47-204ENST00000525078 FAM212AQ96EL1 285 aa9.35□□□□□ -0.91
USP47-204ENST00000525078 SGIP1Q9BQI5 828 aa9.35□□□□□ -0.91
USP47-204ENST00000525078 POTEMA6NI47 508 aa9.33□□□□□ -0.92
USP47-204ENST00000525078 MS4A3Q96HJ5 214 aa9.33□□□□□ -0.92
USP47-204ENST00000525078 ZBTB7CA1YPR0 619 aa9.32□□□□□ -0.92
USP47-204ENST00000525078 ASTLQ6HA08 431 aaPredicted RBP9.32□□□□□ -0.92
USP47-204ENST00000525078 ATMINO43313 823 aaPredicted RBP9.31□□□□□ -0.92
USP47-204ENST00000525078 SEMA3EO15041 775 aa9.3□□□□□ -0.92
USP47-204ENST00000525078 ZMYND10O75800 440 aa9.3□□□□□ -0.92
USP47-204ENST00000525078 IL27Q8NEV9 243 aa9.3□□□□□ -0.92
USP47-204ENST00000525078 CCDC9Q9Y3X0 531 aaKnown RBP9.3□□□□□ -0.92
USP47-204ENST00000525078 TESPA1A2RU30 521 aaPredicted RBP9.29□□□□□ -0.92
USP47-204ENST00000525078 POTEJP0CG39 1038 aa9.29□□□□□ -0.92
USP47-204ENST00000525078 CHRM1P11229 460 aaPredicted RBP9.29□□□□□ -0.92
USP47-204ENST00000525078 C7P10643 843 aa9.27□□□□□ -0.93
USP47-204ENST00000525078 PDIA4P13667 645 aaKnown RBP9.27□□□□□ -0.93
USP47-204ENST00000525078 SMYD5Q6GMV2 418 aa9.27□□□□□ -0.93
USP47-204ENST00000525078 POTEGQ6S5H5 508 aa9.27□□□□□ -0.93
USP47-204ENST00000525078 TSPYL2Q9H2G4 693 aaPredicted RBP9.27□□□□□ -0.93
USP47-204ENST00000525078 METRNQ9UJH8 293 aa9.27□□□□□ -0.93
USP47-204ENST00000525078 E2F4Q16254 413 aa9.26□□□□□ -0.93
USP47-204ENST00000525078 GPBP1L1Q9HC44 474 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms