RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 CCDC61Q9Y6R9 512 aa15.22■□□□□ 0.03
CPNE3-207ENST00000523588 PAK3O75914 559 aaPredicted RBP15.21■□□□□ 0.03
CPNE3-207ENST00000523588 HAX1O00165 279 aa15.2■□□□□ 0.02
CPNE3-207ENST00000523588 ECM2O94769 699 aaPredicted RBP15.19■□□□□ 0.02
CPNE3-207ENST00000523588 TRIM41Q8WV44 630 aa15.19■□□□□ 0.02
CPNE3-207ENST00000523588 ZRANB1Q9UGI0 708 aa15.19■□□□□ 0.02
CPNE3-207ENST00000523588 CHRM1P11229 460 aaPredicted RBP15.16■□□□□ 0.02
CPNE3-207ENST00000523588 EVX2Q03828 476 aa15.16■□□□□ 0.02
CPNE3-207ENST00000523588 PYGBP11216 843 aa15.14■□□□□ 0.01
CPNE3-207ENST00000523588 ZNF579Q8NAF0 562 aaKnown RBP15.1■□□□□ 0.01
CPNE3-207ENST00000523588 RGL2O15211 777 aa15.09■□□□□ 0.01
CPNE3-207ENST00000523588 PHF12Q96QT6 1004 aa15.08■□□□□ 0
CPNE3-207ENST00000523588 RNF25Q96BH1 459 aaPredicted RBP15.07■□□□□ 0
CPNE3-207ENST00000523588 KIF12Q96FN5 646 aa15.06■□□□□ 0
CPNE3-207ENST00000523588 MAP3K13O43283 966 aa15.02■□□□□ -0
CPNE3-207ENST00000523588 SGIP1Q9BQI5 828 aa14.98□□□□□ -0.01
CPNE3-207ENST00000523588 RIOK3O14730 519 aaKnown RBP14.97□□□□□ -0.01
CPNE3-207ENST00000523588 PCDHB13Q9Y5F0 798 aa14.97□□□□□ -0.01
CPNE3-207ENST00000523588 IFNL1Q8IU54 200 aa14.94□□□□□ -0.02
CPNE3-207ENST00000523588 PCDHB8Q9UN66 801 aa14.94□□□□□ -0.02
CPNE3-207ENST00000523588 ZNF467Q7Z7K2 595 aaPredicted RBP14.93□□□□□ -0.02
CPNE3-207ENST00000523588 MS4A3Q96HJ5 214 aa14.91□□□□□ -0.02
CPNE3-207ENST00000523588 DCAF8L2P0C7V8 631 aa14.89□□□□□ -0.03
CPNE3-207ENST00000523588 CLCN6P51797 869 aa14.88□□□□□ -0.03
CPNE3-207ENST00000523588 VGFO15240 615 aaPredicted RBP14.86□□□□□ -0.03
CPNE3-207ENST00000523588 GALR2O43603 387 aaPredicted RBP14.85□□□□□ -0.03
CPNE3-207ENST00000523588 GABBR2O75899 941 aa14.83□□□□□ -0.04
CPNE3-207ENST00000523588 TAOK2Q9UL54 1235 aa14.82□□□□□ -0.04
CPNE3-207ENST00000523588 TRPC6Q9Y210 931 aa14.82□□□□□ -0.04
CPNE3-207ENST00000523588 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.81□□□□□ -0.04
CPNE3-207ENST00000523588 PDAP1Q13442 181 aaKnown RBP14.81□□□□□ -0.04
CPNE3-207ENST00000523588 SP7Q8TDD2 431 aaPredicted RBP14.81□□□□□ -0.04
CPNE3-207ENST00000523588 ZFP91Q96JP5 570 aaPredicted RBP14.81□□□□□ -0.04
CPNE3-207ENST00000523588 PSEN1P49768 467 aa14.79□□□□□ -0.04
CPNE3-207ENST00000523588 CHGAP10645 457 aaKnown RBP14.77□□□□□ -0.05
CPNE3-207ENST00000523588 HS6ST3Q8IZP7 471 aa14.76□□□□□ -0.05
CPNE3-207ENST00000523588 STK25O00506 426 aa14.73□□□□□ -0.05
CPNE3-207ENST00000523588 TIE1P35590 1138 aa14.71□□□□□ -0.05
CPNE3-207ENST00000523588 BCL11BQ9C0K0 894 aaPredicted RBP14.71□□□□□ -0.05
CPNE3-207ENST00000523588 BMP2KQ9NSY1 1161 aaPredicted RBP14.69□□□□□ -0.06
CPNE3-207ENST00000523588 TMEM106CQ9BVX2 250 aa14.68□□□□□ -0.06
CPNE3-207ENST00000523588 STK24Q9Y6E0 443 aa14.68□□□□□ -0.06
CPNE3-207ENST00000523588 TTLL13PA6NNM8 815 aa14.66□□□□□ -0.06
CPNE3-207ENST00000523588 DNAJC5Q9H3Z4 198 aa14.66□□□□□ -0.06
CPNE3-207ENST00000523588 BBXQ8WY36 941 aaPredicted RBP14.62□□□□□ -0.07
CPNE3-207ENST00000523588 ATMINO43313 823 aaPredicted RBP14.61□□□□□ -0.07
CPNE3-207ENST00000523588 ASTLQ6HA08 431 aaPredicted RBP14.61□□□□□ -0.07
CPNE3-207ENST00000523588 CABP2Q9NPB3 220 aa14.6□□□□□ -0.07
CPNE3-207ENST00000523588 ATN1P54259 1190 aaPredicted RBP14.59□□□□□ -0.07
CPNE3-207ENST00000523588 NKX1-1Q15270 411 aaPredicted RBP14.58□□□□□ -0.08
CPNE3-207ENST00000523588 POTEIP0CG38 1075 aa14.57□□□□□ -0.08
CPNE3-207ENST00000523588 DCBLD2Q96PD2 775 aa14.57□□□□□ -0.08
CPNE3-207ENST00000523588 TRIM35Q9UPQ4 493 aa14.55□□□□□ -0.08
CPNE3-207ENST00000523588 EFCAB3Q8N7B9 438 aa14.54□□□□□ -0.08
CPNE3-207ENST00000523588 PELP1Q8IZL8 1130 aaKnown RBP14.52□□□□□ -0.09
CPNE3-207ENST00000523588 GOLGA2Q08379 1002 aa14.49□□□□□ -0.09
CPNE3-207ENST00000523588 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.49□□□□□ -0.09
CPNE3-207ENST00000523588 MFRPQ9BY79 579 aa14.47□□□□□ -0.09
CPNE3-207ENST00000523588 SOX12O15370 315 aa14.46□□□□□ -0.09
CPNE3-207ENST00000523588 MKRN3Q13064 507 aaKnown RBP14.45□□□□□ -0.1
CPNE3-207ENST00000523588 GTPBP6O43824 516 aaPredicted RBP14.44□□□□□ -0.1
CPNE3-207ENST00000523588 PHF8Q9UPP1 1060 aa14.43□□□□□ -0.1
CPNE3-207ENST00000523588 IER5LQ5T953 404 aa14.42□□□□□ -0.1
CPNE3-207ENST00000523588 FBXO22Q8NEZ5 403 aa14.42□□□□□ -0.1
CPNE3-207ENST00000523588 PAXIP1Q6ZW49 1069 aaPredicted RBP14.41□□□□□ -0.1
CPNE3-207ENST00000523588 ILDR1Q86SU0 546 aaPredicted RBP14.41□□□□□ -0.1
CPNE3-207ENST00000523588 PLCB2Q00722 1185 aa14.4□□□□□ -0.1
CPNE3-207ENST00000523588 SPRYD3Q8NCJ5 442 aa14.4□□□□□ -0.1
CPNE3-207ENST00000523588 NLRP6P59044 892 aa14.39□□□□□ -0.11
CPNE3-207ENST00000523588 IRX5P78411 483 aaPredicted RBP14.37□□□□□ -0.11
CPNE3-207ENST00000523588 SLC39A7Q92504 469 aa14.37□□□□□ -0.11
CPNE3-207ENST00000523588 MS4A4AQ96JQ5 239 aa14.37□□□□□ -0.11
CPNE3-207ENST00000523588 CFAP44Q96MT7 982 aa14.37□□□□□ -0.11
CPNE3-207ENST00000523588 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.37□□□□□ -0.11
CPNE3-207ENST00000523588 RYDENQ9NUL5 291 aaKnown RBP14.35□□□□□ -0.11
CPNE3-207ENST00000523588 C7P10643 843 aa14.34□□□□□ -0.11
CPNE3-207ENST00000523588 PDCD7Q8N8D1 485 aaKnown RBP14.33□□□□□ -0.12
CPNE3-207ENST00000523588 POTEFA5A3E0 1075 aa14.32□□□□□ -0.12
CPNE3-207ENST00000523588 OCEL1Q9H607 264 aa14.32□□□□□ -0.12
CPNE3-207ENST00000523588 METRNQ9UJH8 293 aa14.32□□□□□ -0.12
CPNE3-207ENST00000523588 COLQQ9Y215 455 aaPredicted RBP14.32□□□□□ -0.12
CPNE3-207ENST00000523588 PPP1R37O75864 691 aa14.29□□□□□ -0.12
CPNE3-207ENST00000523588 DPY19L2Q6NUT2 758 aa14.28□□□□□ -0.12
CPNE3-207ENST00000523588 SEC24BO95487 1268 aa14.26□□□□□ -0.13
CPNE3-207ENST00000523588 PLCG2P16885 1265 aa14.26□□□□□ -0.13
CPNE3-207ENST00000523588 TSHZ2Q9NRE2 1034 aa14.18□□□□□ -0.14
CPNE3-207ENST00000523588 HAP1P54257 671 aaPredicted RBP14.16□□□□□ -0.14
CPNE3-207ENST00000523588 MICALL2Q8IY33 904 aa14.12□□□□□ -0.15
CPNE3-207ENST00000523588 TMEM121BQ9BXQ6 578 aaPredicted RBP14.12□□□□□ -0.15
CPNE3-207ENST00000523588 BOLA1Q9Y3E2 137 aa14.12□□□□□ -0.15
CPNE3-207ENST00000523588 POTEB2H3BUK9 544 aa14.11□□□□□ -0.15
CPNE3-207ENST00000523588 L3MBTL3Q96JM7 780 aaPredicted RBP14.11□□□□□ -0.15
CPNE3-207ENST00000523588 SLC24A1O60721 1099 aa14.09□□□□□ -0.15
CPNE3-207ENST00000523588 CADPS2Q86UW7 1296 aa14.09□□□□□ -0.15
CPNE3-207ENST00000523588 POTEJP0CG39 1038 aa14.08□□□□□ -0.16
CPNE3-207ENST00000523588 G3V3G9 751 aa14.03□□□□□ -0.16
CPNE3-207ENST00000523588 KDM2AQ9Y2K7 1162 aa13.98□□□□□ -0.17
CPNE3-207ENST00000523588 VSIG10Q8N0Z9 540 aa13.97□□□□□ -0.17
CPNE3-207ENST00000523588 NCKAP5LQ9HCH0 1330 aa13.96□□□□□ -0.17
CPNE3-207ENST00000523588 CRISPLD2Q9H0B8 497 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms