RNA–Protein interactions for RNA: ENST00000523359.1

SKP1-211, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 5

Gene SKP1, Length 748 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-211ENST00000523359 CCDC61Q9Y6R9 512 aa13.82□□□□□ -0.2
SKP1-211ENST00000523359 MS4A3Q96HJ5 214 aa13.78□□□□□ -0.2
SKP1-211ENST00000523359 NUBP1P53384 320 aa13.76□□□□□ -0.21
SKP1-211ENST00000523359 VASPP50552 380 aaPredicted RBP13.74□□□□□ -0.21
SKP1-211ENST00000523359 KIF12Q96FN5 646 aa13.72□□□□□ -0.21
SKP1-211ENST00000523359 LHX8Q68G74 356 aa13.69□□□□□ -0.22
SKP1-211ENST00000523359 MAP3K13O43283 966 aa13.67□□□□□ -0.22
SKP1-211ENST00000523359 FAM212AQ96EL1 285 aa13.66□□□□□ -0.22
SKP1-211ENST00000523359 KLHL34Q8N239 644 aa13.65□□□□□ -0.22
SKP1-211ENST00000523359 PELP1Q8IZL8 1130 aaKnown RBP13.62□□□□□ -0.23
SKP1-211ENST00000523359 TRPC6Q9Y210 931 aa13.61□□□□□ -0.23
SKP1-211ENST00000523359 DCAF8Q5TAQ9 597 aa13.6□□□□□ -0.23
SKP1-211ENST00000523359 ASTLQ6HA08 431 aaPredicted RBP13.6□□□□□ -0.23
SKP1-211ENST00000523359 ATMINO43313 823 aaPredicted RBP13.59□□□□□ -0.23
SKP1-211ENST00000523359 PCDHB13Q9Y5F0 798 aa13.57□□□□□ -0.24
SKP1-211ENST00000523359 ATN1P54259 1190 aaPredicted RBP13.53□□□□□ -0.24
SKP1-211ENST00000523359 BMP2KQ9NSY1 1161 aaPredicted RBP13.53□□□□□ -0.24
SKP1-211ENST00000523359 IFNLR1Q8IU57 520 aaPredicted RBP13.52□□□□□ -0.25
SKP1-211ENST00000523359 PYGBP11216 843 aa13.51□□□□□ -0.25
SKP1-211ENST00000523359 SGIP1Q9BQI5 828 aa13.51□□□□□ -0.25
SKP1-211ENST00000523359 TIE1P35590 1138 aa13.49□□□□□ -0.25
SKP1-211ENST00000523359 IFNL1Q8IU54 200 aa13.49□□□□□ -0.25
SKP1-211ENST00000523359 METRNQ9UJH8 293 aa13.49□□□□□ -0.25
SKP1-211ENST00000523359 SLC39A7Q92504 469 aa13.48□□□□□ -0.25
SKP1-211ENST00000523359 POTEB2H3BUK9 544 aa13.47□□□□□ -0.25
SKP1-211ENST00000523359 TTLL13PA6NNM8 815 aa13.45□□□□□ -0.26
SKP1-211ENST00000523359 C7P10643 843 aa13.45□□□□□ -0.26
SKP1-211ENST00000523359 GSE1Q14687 1217 aa13.44□□□□□ -0.26
SKP1-211ENST00000523359 SPOCK2Q92563 424 aa13.43□□□□□ -0.26
SKP1-211ENST00000523359 PCDHB8Q9UN66 801 aa13.38□□□□□ -0.27
SKP1-211ENST00000523359 TMEM106CQ9BVX2 250 aa13.37□□□□□ -0.27
SKP1-211ENST00000523359 TRIM35Q9UPQ4 493 aa13.37□□□□□ -0.27
SKP1-211ENST00000523359 CIZ1Q9ULV3 898 aaPredicted RBP13.36□□□□□ -0.27
SKP1-211ENST00000523359 AMER1Q5JTC6 1135 aaPredicted RBP13.35□□□□□ -0.27
SKP1-211ENST00000523359 RTN4Q9NQC3 1192 aaKnown RBP13.35□□□□□ -0.27
SKP1-211ENST00000523359 OTUD5Q96G74 571 aa13.34□□□□□ -0.27
SKP1-211ENST00000523359 POTEFA5A3E0 1075 aa13.33□□□□□ -0.28
SKP1-211ENST00000523359 POTEJP0CG39 1038 aa13.3□□□□□ -0.28
SKP1-211ENST00000523359 CHRM1P11229 460 aaPredicted RBP13.29□□□□□ -0.28
SKP1-211ENST00000523359 COLQQ9Y215 455 aaPredicted RBP13.29□□□□□ -0.28
SKP1-211ENST00000523359 SEC24BO95487 1268 aa13.28□□□□□ -0.28
SKP1-211ENST00000523359 ZNF467Q7Z7K2 595 aaPredicted RBP13.28□□□□□ -0.28
SKP1-211ENST00000523359 IER5LQ5T953 404 aa13.25□□□□□ -0.29
SKP1-211ENST00000523359 MAMSTRQ6ZN01 415 aa13.19□□□□□ -0.3
SKP1-211ENST00000523359 PSEN1P49768 467 aa13.17□□□□□ -0.3
SKP1-211ENST00000523359 PLCG2P16885 1265 aa13.16□□□□□ -0.3
SKP1-211ENST00000523359 SCUBE2Q9NQ36 999 aa13.16□□□□□ -0.3
SKP1-211ENST00000523359 IRX5P78411 483 aaPredicted RBP13.15□□□□□ -0.3
SKP1-211ENST00000523359 PDAP1Q13442 181 aaKnown RBP13.13□□□□□ -0.31
SKP1-211ENST00000523359 GOLGA2Q08379 1002 aa13.11□□□□□ -0.31
SKP1-211ENST00000523359 TRIM41Q8WV44 630 aa13.11□□□□□ -0.31
SKP1-211ENST00000523359 OCEL1Q9H607 264 aa13.09□□□□□ -0.31
SKP1-211ENST00000523359 MKRN3Q13064 507 aaKnown RBP13.08□□□□□ -0.32
SKP1-211ENST00000523359 CABP2Q9NPB3 220 aa13.04□□□□□ -0.32
SKP1-211ENST00000523359 PDCD7Q8N8D1 485 aaKnown RBP13.01□□□□□ -0.33
SKP1-211ENST00000523359 RNF25Q96BH1 459 aaPredicted RBP13□□□□□ -0.33
SKP1-211ENST00000523359 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13□□□□□ -0.333e-16■■□□□ 11.7
SKP1-211ENST00000523359 RIOK3O14730 519 aaKnown RBP12.97□□□□□ -0.33
SKP1-211ENST00000523359 SLAIN1Q8ND83 568 aa12.96□□□□□ -0.33
SKP1-211ENST00000523359 FAM163AQ96GL9 167 aaPredicted RBP12.93□□□□□ -0.34
SKP1-211ENST00000523359 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.9□□□□□ -0.34
SKP1-211ENST00000523359 VGFO15240 615 aaPredicted RBP12.9□□□□□ -0.34
SKP1-211ENST00000523359 DPY19L2Q6NUT2 758 aa12.9□□□□□ -0.34
SKP1-211ENST00000523359 EFCAB3Q8N7B9 438 aa12.9□□□□□ -0.34
SKP1-211ENST00000523359 ZFP91Q96JP5 570 aaPredicted RBP12.9□□□□□ -0.34
SKP1-211ENST00000523359 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.9□□□□□ -0.34
SKP1-211ENST00000523359 ECM2O94769 699 aaPredicted RBP12.89□□□□□ -0.35
SKP1-211ENST00000523359 ILDR1Q86SU0 546 aaPredicted RBP12.89□□□□□ -0.35
SKP1-211ENST00000523359 L3MBTL3Q96JM7 780 aaPredicted RBP12.89□□□□□ -0.35
SKP1-211ENST00000523359 POTEMA6NI47 508 aa12.88□□□□□ -0.35
SKP1-211ENST00000523359 LCE2DQ5TA82 110 aaPredicted RBP12.88□□□□□ -0.35
SKP1-211ENST00000523359 POTEGQ6S5H5 508 aa12.87□□□□□ -0.35
SKP1-211ENST00000523359 PKD2Q13563 968 aa12.85□□□□□ -0.35
SKP1-211ENST00000523359 C3orf67Q6ZVT6 689 aa12.85□□□□□ -0.35
SKP1-211ENST00000523359 BOLA1Q9Y3E2 137 aa12.79□□□□□ -0.36
SKP1-211ENST00000523359 G3V3G9 751 aa12.78□□□□□ -0.36
SKP1-211ENST00000523359 RGL2O15211 777 aa12.78□□□□□ -0.36
SKP1-211ENST00000523359 BCL11BQ9C0K0 894 aaPredicted RBP12.78□□□□□ -0.36
SKP1-211ENST00000523359 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
SKP1-211ENST00000523359 SOX12O15370 315 aa12.75□□□□□ -0.37
SKP1-211ENST00000523359 PHF8Q9UPP1 1060 aa12.75□□□□□ -0.37
SKP1-211ENST00000523359 STK24Q9Y6E0 443 aa12.75□□□□□ -0.37
SKP1-211ENST00000523359 ST18O60284 1047 aa12.74□□□□□ -0.37
SKP1-211ENST00000523359 STK25O00506 426 aa12.73□□□□□ -0.37
SKP1-211ENST00000523359 MS4A4AQ96JQ5 239 aa12.71□□□□□ -0.37
SKP1-211ENST00000523359 SNPHO15079 494 aa12.7□□□□□ -0.38
SKP1-211ENST00000523359 DCAF8L2P0C7V8 631 aa12.68□□□□□ -0.38
SKP1-211ENST00000523359 TMEM121BQ9BXQ6 578 aaPredicted RBP12.67□□□□□ -0.38
SKP1-211ENST00000523359 MICALL2Q8IY33 904 aa12.65□□□□□ -0.38
SKP1-211ENST00000523359 PLSCR2Q9NRY7 297 aa12.65□□□□□ -0.38
SKP1-211ENST00000523359 NLRP6P59044 892 aa12.64□□□□□ -0.39
SKP1-211ENST00000523359 FBXO22Q8NEZ5 403 aa12.62□□□□□ -0.39
SKP1-211ENST00000523359 MFRPQ9BY79 579 aa12.62□□□□□ -0.39
SKP1-211ENST00000523359 MARVELD3Q96A59 401 aa12.59□□□□□ -0.39
SKP1-211ENST00000523359 PCDH10Q9P2E7 1040 aa12.59□□□□□ -0.39
SKP1-211ENST00000523359 TMEM92Q6UXU6 159 aa12.57□□□□□ -0.4
SKP1-211ENST00000523359 SLC24A1O60721 1099 aa12.55□□□□□ -0.4
SKP1-211ENST00000523359 CDAN1Q8IWY9 1227 aa12.54□□□□□ -0.4
SKP1-211ENST00000523359 HOXB3P14651 431 aaPredicted RBP12.53□□□□□ -0.4
SKP1-211ENST00000523359 EMP3P54852 163 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms