RNA–Protein interactions for RNA: ENST00000521216.5

SKP1-208, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SKP1, Length 899 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-208ENST00000521216 RGL2O15211 777 aa13.41□□□□□ -0.26
SKP1-208ENST00000521216 PYGBP11216 843 aa13.35□□□□□ -0.27
SKP1-208ENST00000521216 PAK3O75914 559 aaPredicted RBP13.34□□□□□ -0.27
SKP1-208ENST00000521216 CHRM1P11229 460 aaPredicted RBP13.26□□□□□ -0.29
SKP1-208ENST00000521216 CD44P16070 742 aaKnown RBP13.26□□□□□ -0.29
SKP1-208ENST00000521216 RNF25Q96BH1 459 aaPredicted RBP13.26□□□□□ -0.29
SKP1-208ENST00000521216 ZRANB1Q9UGI0 708 aa13.25□□□□□ -0.29
SKP1-208ENST00000521216 RIOK3O14730 519 aaKnown RBP13.24□□□□□ -0.29
SKP1-208ENST00000521216 CCDC61Q9Y6R9 512 aa13.23□□□□□ -0.29
SKP1-208ENST00000521216 CHGAP10645 457 aaKnown RBP13.22□□□□□ -0.29
SKP1-208ENST00000521216 TAOK2Q9UL54 1235 aa13.19□□□□□ -0.3
SKP1-208ENST00000521216 C19orf67A6NJJ6 358 aa13.14□□□□□ -0.31
SKP1-208ENST00000521216 HAX1O00165 279 aa13.14□□□□□ -0.31
SKP1-208ENST00000521216 VGFO15240 615 aaPredicted RBP13.14□□□□□ -0.31
SKP1-208ENST00000521216 ZNF467Q7Z7K2 595 aaPredicted RBP13.13□□□□□ -0.31
SKP1-208ENST00000521216 PHF12Q96QT6 1004 aa13.13□□□□□ -0.31
SKP1-208ENST00000521216 PCDHB8Q9UN66 801 aa13.13□□□□□ -0.31
SKP1-208ENST00000521216 PCDHB13Q9Y5F0 798 aa13.13□□□□□ -0.31
SKP1-208ENST00000521216 MAP3K13O43283 966 aa13.11□□□□□ -0.31
SKP1-208ENST00000521216 BBXQ8WY36 941 aaPredicted RBP13.11□□□□□ -0.31
SKP1-208ENST00000521216 KIF12Q96FN5 646 aa13.11□□□□□ -0.31
SKP1-208ENST00000521216 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.11□□□□□ -0.31
SKP1-208ENST00000521216 STK25O00506 426 aa13.1□□□□□ -0.31
SKP1-208ENST00000521216 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.08□□□□□ -0.32
SKP1-208ENST00000521216 SLC24A1O60721 1099 aa13.08□□□□□ -0.32
SKP1-208ENST00000521216 HS6ST3Q8IZP7 471 aa13.08□□□□□ -0.32
SKP1-208ENST00000521216 ZFP91Q96JP5 570 aaPredicted RBP13.08□□□□□ -0.32
SKP1-208ENST00000521216 ZNF579Q8NAF0 562 aaKnown RBP13.07□□□□□ -0.32
SKP1-208ENST00000521216 STK24Q9Y6E0 443 aa13.06□□□□□ -0.32
SKP1-208ENST00000521216 PLCB2Q00722 1185 aa13.05□□□□□ -0.32
SKP1-208ENST00000521216 IFNL1Q8IU54 200 aa13.05□□□□□ -0.32
SKP1-208ENST00000521216 PDAP1Q13442 181 aaKnown RBP13.04□□□□□ -0.32
SKP1-208ENST00000521216 BCL11BQ9C0K0 894 aaPredicted RBP13.04□□□□□ -0.32
SKP1-208ENST00000521216 SGIP1Q9BQI5 828 aa13.03□□□□□ -0.32
SKP1-208ENST00000521216 POTEHQ6S545 545 aa13.02□□□□□ -0.33
SKP1-208ENST00000521216 PAXIP1Q6ZW49 1069 aaPredicted RBP13.02□□□□□ -0.33
SKP1-208ENST00000521216 CFAP44Q96MT7 982 aa13.02□□□□□ -0.33
SKP1-208ENST00000521216 PSEN1P49768 467 aa13.01□□□□□ -0.33
SKP1-208ENST00000521216 EVX2Q03828 476 aa13□□□□□ -0.33
SKP1-208ENST00000521216 SPRYD3Q8NCJ5 442 aa12.96□□□□□ -0.33
SKP1-208ENST00000521216 MS4A3Q96HJ5 214 aa12.96□□□□□ -0.33
SKP1-208ENST00000521216 HAP1P54257 671 aaPredicted RBP12.94□□□□□ -0.34
SKP1-208ENST00000521216 NKX1-1Q15270 411 aaPredicted RBP12.9□□□□□ -0.34
SKP1-208ENST00000521216 DNAJC5Q9H3Z4 198 aa12.89□□□□□ -0.35
SKP1-208ENST00000521216 TRPC6Q9Y210 931 aa12.88□□□□□ -0.35
SKP1-208ENST00000521216 GALR2O43603 387 aaPredicted RBP12.87□□□□□ -0.35
SKP1-208ENST00000521216 TMEM106CQ9BVX2 250 aa12.87□□□□□ -0.35
SKP1-208ENST00000521216 CABP2Q9NPB3 220 aa12.87□□□□□ -0.35
SKP1-208ENST00000521216 GOLGA2Q08379 1002 aa12.82□□□□□ -0.36
SKP1-208ENST00000521216 CLCN6P51797 869 aa12.81□□□□□ -0.36
SKP1-208ENST00000521216 EFCAB3Q8N7B9 438 aa12.81□□□□□ -0.36
SKP1-208ENST00000521216 GTPBP6O43824 516 aaPredicted RBP12.8□□□□□ -0.36
SKP1-208ENST00000521216 TIE1P35590 1138 aa12.78□□□□□ -0.36
SKP1-208ENST00000521216 RYDENQ9NUL5 291 aaKnown RBP12.77□□□□□ -0.37
SKP1-208ENST00000521216 TTLL13PA6NNM8 815 aa12.76□□□□□ -0.37
SKP1-208ENST00000521216 GABBR2O75899 941 aa12.76□□□□□ -0.37
SKP1-208ENST00000521216 BMP2KQ9NSY1 1161 aaPredicted RBP12.76□□□□□ -0.37
SKP1-208ENST00000521216 TSHZ2Q9NRE2 1034 aa12.75□□□□□ -0.37
SKP1-208ENST00000521216 MKRN3Q13064 507 aaKnown RBP12.73□□□□□ -0.37
SKP1-208ENST00000521216 MFRPQ9BY79 579 aa12.73□□□□□ -0.37
SKP1-208ENST00000521216 SOX12O15370 315 aa12.71□□□□□ -0.37
SKP1-208ENST00000521216 PHF8Q9UPP1 1060 aa12.71□□□□□ -0.37
SKP1-208ENST00000521216 NLRP6P59044 892 aa12.7□□□□□ -0.38
SKP1-208ENST00000521216 TRIM35Q9UPQ4 493 aa12.7□□□□□ -0.38
SKP1-208ENST00000521216 DCBLD2Q96PD2 775 aa12.67□□□□□ -0.38
SKP1-208ENST00000521216 ATN1P54259 1190 aaPredicted RBP12.66□□□□□ -0.38
SKP1-208ENST00000521216 ATMINO43313 823 aaPredicted RBP12.65□□□□□ -0.38
SKP1-208ENST00000521216 VSIG10Q8N0Z9 540 aa12.65□□□□□ -0.38
SKP1-208ENST00000521216 FBXO22Q8NEZ5 403 aa12.64□□□□□ -0.39
SKP1-208ENST00000521216 SP7Q8TDD2 431 aaPredicted RBP12.63□□□□□ -0.39
SKP1-208ENST00000521216 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.63□□□□□ -0.393e-9■■□□□ 13.9
SKP1-208ENST00000521216 ASTLQ6HA08 431 aaPredicted RBP12.61□□□□□ -0.39
SKP1-208ENST00000521216 PPP1R37O75864 691 aa12.6□□□□□ -0.39
SKP1-208ENST00000521216 KDM2AQ9Y2K7 1162 aa12.6□□□□□ -0.39
SKP1-208ENST00000521216 MS4A4AQ96JQ5 239 aa12.57□□□□□ -0.4
SKP1-208ENST00000521216 PELP1Q8IZL8 1130 aaKnown RBP12.52□□□□□ -0.41
SKP1-208ENST00000521216 IER5LQ5T953 404 aa12.5□□□□□ -0.41
SKP1-208ENST00000521216 SEC24BO95487 1268 aa12.49□□□□□ -0.41
SKP1-208ENST00000521216 PLCG2P16885 1265 aa12.49□□□□□ -0.41
SKP1-208ENST00000521216 DPY19L2Q6NUT2 758 aa12.49□□□□□ -0.41
SKP1-208ENST00000521216 CADPS2Q86UW7 1296 aa12.49□□□□□ -0.41
SKP1-208ENST00000521216 OCEL1Q9H607 264 aa12.49□□□□□ -0.41
SKP1-208ENST00000521216 POTEIP0CG38 1075 aa12.47□□□□□ -0.41
SKP1-208ENST00000521216 IRX5P78411 483 aaPredicted RBP12.47□□□□□ -0.41
SKP1-208ENST00000521216 ILDR1Q86SU0 546 aaPredicted RBP12.47□□□□□ -0.41
SKP1-208ENST00000521216 PDCD7Q8N8D1 485 aaKnown RBP12.45□□□□□ -0.42
SKP1-208ENST00000521216 SLC39A7Q92504 469 aa12.45□□□□□ -0.42
SKP1-208ENST00000521216 G3V3G9 751 aa12.42□□□□□ -0.42
SKP1-208ENST00000521216 C7P10643 843 aa12.42□□□□□ -0.42
SKP1-208ENST00000521216 WDR70Q9NW82 654 aa12.41□□□□□ -0.42
SKP1-208ENST00000521216 METRNQ9UJH8 293 aa12.41□□□□□ -0.42
SKP1-208ENST00000521216 COLQQ9Y215 455 aaPredicted RBP12.41□□□□□ -0.42
SKP1-208ENST00000521216 BOLA1Q9Y3E2 137 aa12.37□□□□□ -0.43
SKP1-208ENST00000521216 MICALL2Q8IY33 904 aa12.36□□□□□ -0.43
SKP1-208ENST00000521216 L3MBTL3Q96JM7 780 aaPredicted RBP12.35□□□□□ -0.43
SKP1-208ENST00000521216 PDE4AP27815 886 aa12.34□□□□□ -0.43
SKP1-208ENST00000521216 LARP6Q9BRS8 491 aaKnown RBP12.34□□□□□ -0.43
SKP1-208ENST00000521216 POTEFA5A3E0 1075 aa12.33□□□□□ -0.44
SKP1-208ENST00000521216 NCKAP5LQ9HCH0 1330 aa12.31□□□□□ -0.44
SKP1-208ENST00000521216 BCANQ96GW7 911 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms