RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 FAM163AQ96GL9 167 aaPredicted RBP11.01□□□□□ -0.65
HMGB1P41-201ENST00000520234 SCUBE2Q9NQ36 999 aa10.99□□□□□ -0.65
HMGB1P41-201ENST00000520234 STAG3Q9UJ98 1225 aa10.96□□□□□ -0.65
HMGB1P41-201ENST00000520234 ATMINO43313 823 aaPredicted RBP10.94□□□□□ -0.66
HMGB1P41-201ENST00000520234 NPM1P06748 294 aaKnown RBP eCLIP10.89□□□□□ -0.67
HMGB1P41-201ENST00000520234 MS4A3Q96HJ5 214 aa10.89□□□□□ -0.67
HMGB1P41-201ENST00000520234 EHMT2Q96KQ7 1210 aa10.89□□□□□ -0.67
HMGB1P41-201ENST00000520234 CDAN1Q8IWY9 1227 aa10.88□□□□□ -0.67
HMGB1P41-201ENST00000520234 ATN1P54259 1190 aaPredicted RBP10.78□□□□□ -0.68
HMGB1P41-201ENST00000520234 MNX1P50219 401 aaPredicted RBP10.77□□□□□ -0.69
HMGB1P41-201ENST00000520234 POTEFA5A3E0 1075 aa10.73□□□□□ -0.69
HMGB1P41-201ENST00000520234 CSRNP3Q8WYN3 585 aa10.72□□□□□ -0.69
HMGB1P41-201ENST00000520234 MMRN1Q13201 1228 aa10.69□□□□□ -0.7
HMGB1P41-201ENST00000520234 BMP2KQ9NSY1 1161 aaPredicted RBP10.66□□□□□ -0.7
HMGB1P41-201ENST00000520234 ST18O60284 1047 aa10.63□□□□□ -0.71
HMGB1P41-201ENST00000520234 SPNS2Q8IVW8 549 aa10.63□□□□□ -0.71
HMGB1P41-201ENST00000520234 TIE1P35590 1138 aa10.62□□□□□ -0.71
HMGB1P41-201ENST00000520234 CCDC61Q9Y6R9 512 aa10.62□□□□□ -0.71
HMGB1P41-201ENST00000520234 SEC24BO95487 1268 aa10.61□□□□□ -0.71
HMGB1P41-201ENST00000520234 KIF12Q96FN5 646 aa10.6□□□□□ -0.71
HMGB1P41-201ENST00000520234 TSPYL2Q9H2G4 693 aaPredicted RBP10.6□□□□□ -0.71
HMGB1P41-201ENST00000520234 COLQQ9Y215 455 aaPredicted RBP10.58□□□□□ -0.72
HMGB1P41-201ENST00000520234 SPDYE4A6NLX3 237 aa10.55□□□□□ -0.72
HMGB1P41-201ENST00000520234 SLAIN1Q8ND83 568 aa10.55□□□□□ -0.72
HMGB1P41-201ENST00000520234 IER5LQ5T953 404 aa10.54□□□□□ -0.72
HMGB1P41-201ENST00000520234 TRPC6Q9Y210 931 aa10.54□□□□□ -0.72
HMGB1P41-201ENST00000520234 TMEM121BQ9BXQ6 578 aaPredicted RBP10.53□□□□□ -0.72
HMGB1P41-201ENST00000520234 TTLL13PA6NNM8 815 aa10.5□□□□□ -0.73
HMGB1P41-201ENST00000520234 MAP3K13O43283 966 aa10.48□□□□□ -0.73
HMGB1P41-201ENST00000520234 TRIM35Q9UPQ4 493 aa10.44□□□□□ -0.74
HMGB1P41-201ENST00000520234 SNPHO15079 494 aa10.41□□□□□ -0.74
HMGB1P41-201ENST00000520234 SGIP1Q9BQI5 828 aa10.37□□□□□ -0.75
HMGB1P41-201ENST00000520234 PLCG2P16885 1265 aa10.35□□□□□ -0.75
HMGB1P41-201ENST00000520234 MARVELD3Q96A59 401 aa10.34□□□□□ -0.75
HMGB1P41-201ENST00000520234 RASEFQ8IZ41 740 aa10.3□□□□□ -0.76
HMGB1P41-201ENST00000520234 PCDHB13Q9Y5F0 798 aa10.29□□□□□ -0.76
HMGB1P41-201ENST00000520234 PLEKHG5O94827 1062 aa10.27□□□□□ -0.77
HMGB1P41-201ENST00000520234 IRX5P78411 483 aaPredicted RBP10.27□□□□□ -0.77
HMGB1P41-201ENST00000520234 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.26□□□□□ -0.77
HMGB1P41-201ENST00000520234 EMP3P54852 163 aa10.25□□□□□ -0.77
HMGB1P41-201ENST00000520234 KRTAP3-3Q9BYR6 98 aa10.25□□□□□ -0.77
HMGB1P41-201ENST00000520234 KRTAP3-2Q9BYR7 98 aa10.25□□□□□ -0.77
HMGB1P41-201ENST00000520234 TMEM106CQ9BVX2 250 aa10.24□□□□□ -0.77
HMGB1P41-201ENST00000520234 OCEL1Q9H607 264 aa10.2□□□□□ -0.78
HMGB1P41-201ENST00000520234 IFNL1Q8IU54 200 aa10.19□□□□□ -0.78
HMGB1P41-201ENST00000520234 PROM2Q8N271 834 aa10.19□□□□□ -0.78
HMGB1P41-201ENST00000520234 HS3ST6Q96QI5 342 aa10.19□□□□□ -0.78
HMGB1P41-201ENST00000520234 POTEB3A0JP26 581 aa10.14□□□□□ -0.79
HMGB1P41-201ENST00000520234 POTEBQ6S5H4 581 aa10.14□□□□□ -0.79
HMGB1P41-201ENST00000520234 MIER1Q8N108 512 aa10.14□□□□□ -0.79
HMGB1P41-201ENST00000520234 FAM205CA6NFA0 338 aa10.13□□□□□ -0.79
HMGB1P41-201ENST00000520234 C3orf67Q6ZVT6 689 aa10.09□□□□□ -0.79
HMGB1P41-201ENST00000520234 RNF166Q96A37 237 aaPredicted RBP10.06□□□□□ -0.8
HMGB1P41-201ENST00000520234 ZBTB47Q9UFB7 747 aaPredicted RBP10.04□□□□□ -0.8
HMGB1P41-201ENST00000520234 NUBP1P53384 320 aa10.03□□□□□ -0.8
HMGB1P41-201ENST00000520234 FAM212AQ96EL1 285 aa10.02□□□□□ -0.81
HMGB1P41-201ENST00000520234 L3MBTL3Q96JM7 780 aaPredicted RBP10□□□□□ -0.81
HMGB1P41-201ENST00000520234 PDCD7Q8N8D1 485 aaKnown RBP9.99□□□□□ -0.81
HMGB1P41-201ENST00000520234 PLCD3Q8N3E9 789 aa9.98□□□□□ -0.81
HMGB1P41-201ENST00000520234 MYT1LQ9UL68 1186 aa9.95□□□□□ -0.82
HMGB1P41-201ENST00000520234 HOXB1P14653 301 aaPredicted RBP9.89□□□□□ -0.83
HMGB1P41-201ENST00000520234 ERBB3P21860 1342 aa9.88□□□□□ -0.83
HMGB1P41-201ENST00000520234 HOXB3P14651 431 aaPredicted RBP9.87□□□□□ -0.83
HMGB1P41-201ENST00000520234 PTGER2P43116 358 aa9.87□□□□□ -0.83
HMGB1P41-201ENST00000520234 GOLGA2Q08379 1002 aa9.87□□□□□ -0.83
HMGB1P41-201ENST00000520234 MKRN3Q13064 507 aaKnown RBP9.87□□□□□ -0.83
HMGB1P41-201ENST00000520234 ZNF710Q8N1W2 664 aa9.85□□□□□ -0.83
HMGB1P41-201ENST00000520234 PCDHB8Q9UN66 801 aa9.85□□□□□ -0.83
HMGB1P41-201ENST00000520234 PYGBP11216 843 aa9.84□□□□□ -0.83
HMGB1P41-201ENST00000520234 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.82□□□□□ -0.84
HMGB1P41-201ENST00000520234 DOK7Q18PE1 504 aa9.81□□□□□ -0.84
HMGB1P41-201ENST00000520234 VARS2Q5ST30 1063 aaKnown RBP9.79□□□□□ -0.84
HMGB1P41-201ENST00000520234 DCAF8Q5TAQ9 597 aa9.78□□□□□ -0.84
HMGB1P41-201ENST00000520234 RIMBP2O15034 1052 aa9.76□□□□□ -0.85
HMGB1P41-201ENST00000520234 ZNF467Q7Z7K2 595 aaPredicted RBP9.76□□□□□ -0.85
HMGB1P41-201ENST00000520234 ILDR1Q86SU0 546 aaPredicted RBP9.76□□□□□ -0.85
HMGB1P41-201ENST00000520234 ZNF687Q8N1G0 1237 aa9.75□□□□□ -0.85
HMGB1P41-201ENST00000520234 G3V3G9 751 aa9.74□□□□□ -0.85
HMGB1P41-201ENST00000520234 BOLA1Q9Y3E2 137 aa9.72□□□□□ -0.85
HMGB1P41-201ENST00000520234 FKBP8Q14318 412 aa9.69□□□□□ -0.86
HMGB1P41-201ENST00000520234 ZSWIM6Q9HCJ5 1215 aa9.68□□□□□ -0.86
HMGB1P41-201ENST00000520234 DPY19L2Q6NUT2 758 aa9.67□□□□□ -0.86
HMGB1P41-201ENST00000520234 PLA2G2EQ9NZK7 142 aa9.67□□□□□ -0.86
HMGB1P41-201ENST00000520234 PSEN1P49768 467 aa9.64□□□□□ -0.87
HMGB1P41-201ENST00000520234 ANKRD13DQ6ZTN6 518 aa9.62□□□□□ -0.87
HMGB1P41-201ENST00000520234 CHRM1P11229 460 aaPredicted RBP9.59□□□□□ -0.87
HMGB1P41-201ENST00000520234 GSE1Q14687 1217 aa9.59□□□□□ -0.87
HMGB1P41-201ENST00000520234 GPR153Q6NV75 609 aa9.57□□□□□ -0.88
HMGB1P41-201ENST00000520234 LSM11P83369 360 aaKnown RBP eCLIP9.56□□□□□ -0.88
HMGB1P41-201ENST00000520234 HCSTQ9UBK5 93 aa9.56□□□□□ -0.88
HMGB1P41-201ENST00000520234 PDAP1Q13442 181 aaKnown RBP9.55□□□□□ -0.88
HMGB1P41-201ENST00000520234 CABP2Q9NPB3 220 aa9.53□□□□□ -0.88
HMGB1P41-201ENST00000520234 ZNF316A6NFI3 1004 aaPredicted RBP9.47□□□□□ -0.89
HMGB1P41-201ENST00000520234 PBX2P40425 430 aa9.46□□□□□ -0.9
HMGB1P41-201ENST00000520234 ARSIQ5FYB1 569 aa9.44□□□□□ -0.9
HMGB1P41-201ENST00000520234 TMEM92Q6UXU6 159 aa9.44□□□□□ -0.9
HMGB1P41-201ENST00000520234 MICALL2Q8IY33 904 aa9.42□□□□□ -0.9
HMGB1P41-201ENST00000520234 RGS20O76081 388 aa9.41□□□□□ -0.9
HMGB1P41-201ENST00000520234 FBXO3Q9UK99 471 aa9.39□□□□□ -0.91
HMGB1P41-201ENST00000520234 IRX2Q9BZI1 471 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms