RNA–Protein interactions for RNA: ENST00000520062.1

HMGB1P46-201, Transcript of high mobility group box 1 pseudogene 46, humanhuman

BASIC

Gene HMGB1P46, Length 610 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P46-201ENST00000520062 PRR29P0C7W0 189 aa12.01□□□□□ -0.49
HMGB1P46-201ENST00000520062 RNF25Q96BH1 459 aaPredicted RBP12.01□□□□□ -0.49
HMGB1P46-201ENST00000520062 CREBZFQ9NS37 354 aa12.01□□□□□ -0.49
HMGB1P46-201ENST00000520062 REM2Q8IYK8 340 aaPredicted RBP11.99□□□□□ -0.49
HMGB1P46-201ENST00000520062 FAM212AQ96EL1 285 aa11.99□□□□□ -0.49
HMGB1P46-201ENST00000520062 CLEC11AQ9Y240 323 aa11.99□□□□□ -0.49
HMGB1P46-201ENST00000520062 DCAF8Q5TAQ9 597 aa11.98□□□□□ -0.49
HMGB1P46-201ENST00000520062 RIOK3O14730 519 aaKnown RBP11.97□□□□□ -0.49
HMGB1P46-201ENST00000520062 MNX1P50219 401 aaPredicted RBP11.97□□□□□ -0.49
HMGB1P46-201ENST00000520062 TSHZ2Q9NRE2 1034 aa11.96□□□□□ -0.49
HMGB1P46-201ENST00000520062 CHRM1P11229 460 aaPredicted RBP11.94□□□□□ -0.5
HMGB1P46-201ENST00000520062 VGFO15240 615 aaPredicted RBP11.89□□□□□ -0.51
HMGB1P46-201ENST00000520062 SGIP1Q9BQI5 828 aa11.87□□□□□ -0.51
HMGB1P46-201ENST00000520062 RASEFQ8IZ41 740 aa11.86□□□□□ -0.51
HMGB1P46-201ENST00000520062 PITPNM1O00562 1244 aa11.84□□□□□ -0.51
HMGB1P46-201ENST00000520062 NKX1-1Q15270 411 aaPredicted RBP11.84□□□□□ -0.51
HMGB1P46-201ENST00000520062 STK25O00506 426 aa11.82□□□□□ -0.52
HMGB1P46-201ENST00000520062 GTPBP6O43824 516 aaPredicted RBP11.8□□□□□ -0.52
HMGB1P46-201ENST00000520062 RYDENQ9NUL5 291 aaKnown RBP11.79□□□□□ -0.52
HMGB1P46-201ENST00000520062 PRKCSHP14314 528 aaPredicted RBP11.78□□□□□ -0.52
HMGB1P46-201ENST00000520062 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.74□□□□□ -0.53
HMGB1P46-201ENST00000520062 ZFP91Q96JP5 570 aaPredicted RBP11.74□□□□□ -0.53
HMGB1P46-201ENST00000520062 PYGBP11216 843 aa11.73□□□□□ -0.53
HMGB1P46-201ENST00000520062 BCL11BQ9C0K0 894 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P46-201ENST00000520062 TPRNQ4KMQ1 711 aa11.72□□□□□ -0.53
HMGB1P46-201ENST00000520062 STK24Q9Y6E0 443 aa11.72□□□□□ -0.53
HMGB1P46-201ENST00000520062 NBR1Q14596 966 aa11.71□□□□□ -0.53
HMGB1P46-201ENST00000520062 ZNF467Q7Z7K2 595 aaPredicted RBP11.67□□□□□ -0.54
HMGB1P46-201ENST00000520062 FARP1Q9Y4F1 1045 aaPredicted RBP11.64□□□□□ -0.55
HMGB1P46-201ENST00000520062 CHADLQ6NUI6 762 aa11.62□□□□□ -0.55
HMGB1P46-201ENST00000520062 TSPYL2Q9H2G4 693 aaPredicted RBP11.61□□□□□ -0.55
HMGB1P46-201ENST00000520062 PDAP1Q13442 181 aaKnown RBP11.6□□□□□ -0.55
HMGB1P46-201ENST00000520062 CCDC61Q9Y6R9 512 aa11.55□□□□□ -0.56
HMGB1P46-201ENST00000520062 PRKAR2AP13861 404 aaKnown RBP11.54□□□□□ -0.56
HMGB1P46-201ENST00000520062 ZNF579Q8NAF0 562 aaKnown RBP11.54□□□□□ -0.56
HMGB1P46-201ENST00000520062 FXR2P51116 673 aaKnown RBP eCLIP11.52□□□□□ -0.57
HMGB1P46-201ENST00000520062 P3H3Q8IVL6 736 aa11.51□□□□□ -0.57
HMGB1P46-201ENST00000520062 PCDHB8Q9UN66 801 aa11.5□□□□□ -0.57
HMGB1P46-201ENST00000520062 PCDHB13Q9Y5F0 798 aa11.5□□□□□ -0.57
HMGB1P46-201ENST00000520062 PAK3O75914 559 aaPredicted RBP11.49□□□□□ -0.57
HMGB1P46-201ENST00000520062 PSEN1P49768 467 aa11.49□□□□□ -0.57
HMGB1P46-201ENST00000520062 MFRPQ9BY79 579 aa11.44□□□□□ -0.58
HMGB1P46-201ENST00000520062 WDR70Q9NW82 654 aa11.42□□□□□ -0.58
HMGB1P46-201ENST00000520062 CADPS2Q86UW7 1296 aa11.4□□□□□ -0.58
HMGB1P46-201ENST00000520062 IFNL1Q8IU54 200 aa11.4□□□□□ -0.58
HMGB1P46-201ENST00000520062 KIF12Q96FN5 646 aa11.39□□□□□ -0.59
HMGB1P46-201ENST00000520062 SOX12O15370 315 aa11.38□□□□□ -0.59
HMGB1P46-201ENST00000520062 MAP3K13O43283 966 aa11.37□□□□□ -0.59
HMGB1P46-201ENST00000520062 NLRP6P59044 892 aa11.37□□□□□ -0.59
HMGB1P46-201ENST00000520062 CHRDL2Q6WN34 429 aa11.37□□□□□ -0.59
HMGB1P46-201ENST00000520062 PIP4P2Q8N4L2 257 aa11.36□□□□□ -0.59
HMGB1P46-201ENST00000520062 FBXO22Q8NEZ5 403 aa11.35□□□□□ -0.59
HMGB1P46-201ENST00000520062 KCNV2Q8TDN2 545 aa11.35□□□□□ -0.59
HMGB1P46-201ENST00000520062 EFCAB3Q8N7B9 438 aa11.33□□□□□ -0.6
HMGB1P46-201ENST00000520062 CABP2Q9NPB3 220 aa11.32□□□□□ -0.6
HMGB1P46-201ENST00000520062 PPP1R37O75864 691 aa11.28□□□□□ -0.6
HMGB1P46-201ENST00000520062 PHF8Q9UPP1 1060 aa11.28□□□□□ -0.6
HMGB1P46-201ENST00000520062 ARHGEF1Q92888 912 aaKnown RBP11.27□□□□□ -0.61
HMGB1P46-201ENST00000520062 ZRANB1Q9UGI0 708 aa11.27□□□□□ -0.61
HMGB1P46-201ENST00000520062 CD44P16070 742 aaKnown RBP11.25□□□□□ -0.61
HMGB1P46-201ENST00000520062 TULP1O00294 542 aaPredicted RBP11.23□□□□□ -0.61
HMGB1P46-201ENST00000520062 E2F4Q16254 413 aa11.23□□□□□ -0.61
HMGB1P46-201ENST00000520062 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.23□□□□□ -0.61
HMGB1P46-201ENST00000520062 LMOD2Q6P5Q4 547 aa11.22□□□□□ -0.61
HMGB1P46-201ENST00000520062 PHF12Q96QT6 1004 aa11.2□□□□□ -0.62
HMGB1P46-201ENST00000520062 GOLGA2Q08379 1002 aa11.18□□□□□ -0.62
HMGB1P46-201ENST00000520062 PDE4AP27815 886 aa11.17□□□□□ -0.62
HMGB1P46-201ENST00000520062 MS4A4AQ96JQ5 239 aa11.17□□□□□ -0.62
HMGB1P46-201ENST00000520062 NCKAP5LQ9HCH0 1330 aa11.16□□□□□ -0.62
HMGB1P46-201ENST00000520062 MFSD10Q14728 455 aa11.16□□□□□ -0.62
HMGB1P46-201ENST00000520062 TMEM106CQ9BVX2 250 aa11.15□□□□□ -0.62
HMGB1P46-201ENST00000520062 CRISPLD2Q9H0B8 497 aa11.13□□□□□ -0.63
HMGB1P46-201ENST00000520062 TESPA1A2RU30 521 aaPredicted RBP11.12□□□□□ -0.63
HMGB1P46-201ENST00000520062 LARP6Q9BRS8 491 aaKnown RBP11.12□□□□□ -0.63
HMGB1P46-201ENST00000520062 ARIH1Q9Y4X5 557 aaPredicted RBP11.12□□□□□ -0.63
HMGB1P46-201ENST00000520062 MKRN3Q13064 507 aaKnown RBP11.11□□□□□ -0.63
HMGB1P46-201ENST00000520062 MS4A3Q96HJ5 214 aa11.11□□□□□ -0.63
HMGB1P46-201ENST00000520062 C19orf67A6NJJ6 358 aa11.1□□□□□ -0.63
HMGB1P46-201ENST00000520062 TIE1P35590 1138 aa11.09□□□□□ -0.63
HMGB1P46-201ENST00000520062 TMEM132AQ24JP5 1023 aa11.09□□□□□ -0.63
HMGB1P46-201ENST00000520062 DDX27Q96GQ7 796 aaKnown RBP11.09□□□□□ -0.63
HMGB1P46-201ENST00000520062 SEMA3EO15041 775 aa11.07□□□□□ -0.64
HMGB1P46-201ENST00000520062 ILDR1Q86SU0 546 aaPredicted RBP11.07□□□□□ -0.64
HMGB1P46-201ENST00000520062 CAMK2BQ13554 666 aa11.06□□□□□ -0.64
HMGB1P46-201ENST00000520062 SMYD5Q6GMV2 418 aa11.06□□□□□ -0.64
HMGB1P46-201ENST00000520062 TRPC6Q9Y210 931 aa11.06□□□□□ -0.64
HMGB1P46-201ENST00000520062 ZC3H15Q8WU90 426 aaKnown RBP11.04□□□□□ -0.64
HMGB1P46-201ENST00000520062 TTLL13PA6NNM8 815 aa11.02□□□□□ -0.65
HMGB1P46-201ENST00000520062 GTF3C3Q9Y5Q9 886 aa11□□□□□ -0.65
HMGB1P46-201ENST00000520062 CLCN6P51797 869 aa10.99□□□□□ -0.65
HMGB1P46-201ENST00000520062 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.99□□□□□ -0.65
HMGB1P46-201ENST00000520062 ERICH6Q7L0X2 663 aa10.98□□□□□ -0.65
HMGB1P46-201ENST00000520062 GPHNQ9NQX3 736 aaPredicted RBP10.98□□□□□ -0.65
HMGB1P46-201ENST00000520062 BMP2KQ9NSY1 1161 aaPredicted RBP10.98□□□□□ -0.65
HMGB1P46-201ENST00000520062 PPP1R15BQ5SWA1 713 aa10.96□□□□□ -0.65
HMGB1P46-201ENST00000520062 ZMYND10O75800 440 aa10.94□□□□□ -0.66
HMGB1P46-201ENST00000520062 BRPF1P55201 1214 aaPredicted RBP10.94□□□□□ -0.66
HMGB1P46-201ENST00000520062 TRIM35Q9UPQ4 493 aa10.94□□□□□ -0.66
HMGB1P46-201ENST00000520062 SLC24A3Q9HC58 644 aa10.9□□□□□ -0.66
HMGB1P46-201ENST00000520062 SPDYE16A6NNV3 312 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms