RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 OTUD5Q96G74 571 aa11.63□□□□□ -0.55
CSMD3-209ENST00000519485 TSPYL2Q9H2G4 693 aaPredicted RBP11.63□□□□□ -0.55
CSMD3-209ENST00000519485 ATMINO43313 823 aaPredicted RBP11.62□□□□□ -0.55
CSMD3-209ENST00000519485 MIER1Q8N108 512 aa11.61□□□□□ -0.55
CSMD3-209ENST00000519485 C7P10643 843 aa11.6□□□□□ -0.55
CSMD3-209ENST00000519485 SLC39A7Q92504 469 aa11.6□□□□□ -0.55
CSMD3-209ENST00000519485 KIF12Q96FN5 646 aa11.6□□□□□ -0.55
CSMD3-209ENST00000519485 METRNQ9UJH8 293 aa11.57□□□□□ -0.56
CSMD3-209ENST00000519485 RASEFQ8IZ41 740 aa11.55□□□□□ -0.56
CSMD3-209ENST00000519485 ZBTB47Q9UFB7 747 aaPredicted RBP11.53□□□□□ -0.56
CSMD3-209ENST00000519485 ATN1P54259 1190 aaPredicted RBP11.51□□□□□ -0.57
CSMD3-209ENST00000519485 TIE1P35590 1138 aa11.5□□□□□ -0.57
CSMD3-209ENST00000519485 PLCD3Q8N3E9 789 aa11.5□□□□□ -0.57
CSMD3-209ENST00000519485 MAP3K13O43283 966 aa11.49□□□□□ -0.57
CSMD3-209ENST00000519485 SGIP1Q9BQI5 828 aa11.49□□□□□ -0.57
CSMD3-209ENST00000519485 BMP2KQ9NSY1 1161 aaPredicted RBP11.49□□□□□ -0.57
CSMD3-209ENST00000519485 POTEJP0CG39 1038 aa11.47□□□□□ -0.57
CSMD3-209ENST00000519485 MAMSTRQ6ZN01 415 aa11.47□□□□□ -0.57
CSMD3-209ENST00000519485 NUBP1P53384 320 aa11.46□□□□□ -0.57
CSMD3-209ENST00000519485 TRPC6Q9Y210 931 aa11.44□□□□□ -0.58
CSMD3-209ENST00000519485 FKBP8Q14318 412 aa11.43□□□□□ -0.58
CSMD3-209ENST00000519485 POTEFA5A3E0 1075 aa11.39□□□□□ -0.59
CSMD3-209ENST00000519485 TTLL13PA6NNM8 815 aa11.39□□□□□ -0.59
CSMD3-209ENST00000519485 SCUBE2Q9NQ36 999 aa11.37□□□□□ -0.59
CSMD3-209ENST00000519485 PCDHB13Q9Y5F0 798 aa11.37□□□□□ -0.59
CSMD3-209ENST00000519485 IER5LQ5T953 404 aa11.36□□□□□ -0.59
CSMD3-209ENST00000519485 FAM212AQ96EL1 285 aa11.36□□□□□ -0.59
CSMD3-209ENST00000519485 POTEMA6NI47 508 aa11.33□□□□□ -0.6
CSMD3-209ENST00000519485 FBXO3Q9UK99 471 aa11.33□□□□□ -0.6
CSMD3-209ENST00000519485 IFNL1Q8IU54 200 aa11.31□□□□□ -0.6
CSMD3-209ENST00000519485 POTEGQ6S5H5 508 aa11.3□□□□□ -0.6
CSMD3-209ENST00000519485 TRIM35Q9UPQ4 493 aa11.3□□□□□ -0.6
CSMD3-209ENST00000519485 COLQQ9Y215 455 aaPredicted RBP11.29□□□□□ -0.6
CSMD3-209ENST00000519485 PCDH10Q9P2E7 1040 aa11.28□□□□□ -0.6
CSMD3-209ENST00000519485 SEC24BO95487 1268 aa11.27□□□□□ -0.61
CSMD3-209ENST00000519485 LCE2DQ5TA82 110 aaPredicted RBP11.25□□□□□ -0.61
CSMD3-209ENST00000519485 TMEM106CQ9BVX2 250 aa11.23□□□□□ -0.61
CSMD3-209ENST00000519485 DCAF8Q5TAQ9 597 aa11.19□□□□□ -0.62
CSMD3-209ENST00000519485 IRX5P78411 483 aaPredicted RBP11.17□□□□□ -0.62
CSMD3-209ENST00000519485 PYGBP11216 843 aa11.16□□□□□ -0.62
CSMD3-209ENST00000519485 VASPP50552 380 aaPredicted RBP11.16□□□□□ -0.62
CSMD3-209ENST00000519485 FAM163AQ96GL9 167 aaPredicted RBP11.15□□□□□ -0.62
CSMD3-209ENST00000519485 PLCG2P16885 1265 aa11.13□□□□□ -0.63
CSMD3-209ENST00000519485 GSE1Q14687 1217 aa11.13□□□□□ -0.63
CSMD3-209ENST00000519485 CHRM1P11229 460 aaPredicted RBP11.11□□□□□ -0.63
CSMD3-209ENST00000519485 OCEL1Q9H607 264 aa11.11□□□□□ -0.63
CSMD3-209ENST00000519485 PCDHB8Q9UN66 801 aa11.09□□□□□ -0.63
CSMD3-209ENST00000519485 ZNF467Q7Z7K2 595 aaPredicted RBP11.08□□□□□ -0.64
CSMD3-209ENST00000519485 KLHL34Q8N239 644 aa11.07□□□□□ -0.64
CSMD3-209ENST00000519485 SLAIN1Q8ND83 568 aa11.07□□□□□ -0.64
CSMD3-209ENST00000519485 ST18O60284 1047 aa10.99□□□□□ -0.65
CSMD3-209ENST00000519485 PDCD7Q8N8D1 485 aaKnown RBP10.99□□□□□ -0.65
CSMD3-209ENST00000519485 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.96□□□□□ -0.65
CSMD3-209ENST00000519485 ILDR1Q86SU0 546 aaPredicted RBP10.95□□□□□ -0.66
CSMD3-209ENST00000519485 TMEM121BQ9BXQ6 578 aaPredicted RBP10.95□□□□□ -0.66
CSMD3-209ENST00000519485 SNPHO15079 494 aa10.94□□□□□ -0.66
CSMD3-209ENST00000519485 PSEN1P49768 467 aa10.94□□□□□ -0.66
CSMD3-209ENST00000519485 GOLGA2Q08379 1002 aa10.94□□□□□ -0.66
CSMD3-209ENST00000519485 MKRN3Q13064 507 aaKnown RBP10.94□□□□□ -0.66
CSMD3-209ENST00000519485 IFNLR1Q8IU57 520 aaPredicted RBP10.94□□□□□ -0.66
CSMD3-209ENST00000519485 CDAN1Q8IWY9 1227 aa10.94□□□□□ -0.66
CSMD3-209ENST00000519485 SPOCK2Q92563 424 aa10.94□□□□□ -0.66
CSMD3-209ENST00000519485 L3MBTL3Q96JM7 780 aaPredicted RBP10.92□□□□□ -0.66
CSMD3-209ENST00000519485 PDAP1Q13442 181 aaKnown RBP10.91□□□□□ -0.66
CSMD3-209ENST00000519485 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.87□□□□□ -0.67
CSMD3-209ENST00000519485 C3orf67Q6ZVT6 689 aa10.86□□□□□ -0.67
CSMD3-209ENST00000519485 TRIM41Q8WV44 630 aa10.83□□□□□ -0.68
CSMD3-209ENST00000519485 CIZ1Q9ULV3 898 aaPredicted RBP10.83□□□□□ -0.68
CSMD3-209ENST00000519485 CABP2Q9NPB3 220 aa10.78□□□□□ -0.68
CSMD3-209ENST00000519485 DPY19L2Q6NUT2 758 aa10.74□□□□□ -0.69
CSMD3-209ENST00000519485 BOLA1Q9Y3E2 137 aa10.74□□□□□ -0.69
CSMD3-209ENST00000519485 MARVELD3Q96A59 401 aa10.73□□□□□ -0.69
CSMD3-209ENST00000519485 G3V3G9 751 aa10.7□□□□□ -0.7
CSMD3-209ENST00000519485 SPNS2Q8IVW8 549 aa10.69□□□□□ -0.7
CSMD3-209ENST00000519485 EMP3P54852 163 aa10.68□□□□□ -0.7
CSMD3-209ENST00000519485 HOXB3P14651 431 aaPredicted RBP10.66□□□□□ -0.7
CSMD3-209ENST00000519485 MMRN1Q13201 1228 aa10.66□□□□□ -0.7
CSMD3-209ENST00000519485 EFCAB3Q8N7B9 438 aa10.66□□□□□ -0.7
CSMD3-209ENST00000519485 RIOK3O14730 519 aaKnown RBP10.63□□□□□ -0.71
CSMD3-209ENST00000519485 HS3ST6Q96QI5 342 aa10.63□□□□□ -0.71
CSMD3-209ENST00000519485 POTEB3A0JP26 581 aa10.62□□□□□ -0.71
CSMD3-209ENST00000519485 SOX12O15370 315 aa10.62□□□□□ -0.71
CSMD3-209ENST00000519485 POTEBQ6S5H4 581 aa10.62□□□□□ -0.71
CSMD3-209ENST00000519485 RNF25Q96BH1 459 aaPredicted RBP10.61□□□□□ -0.71
CSMD3-209ENST00000519485 KRTAP3-3Q9BYR6 98 aa10.6□□□□□ -0.71
CSMD3-209ENST00000519485 KRTAP3-2Q9BYR7 98 aa10.6□□□□□ -0.71
CSMD3-209ENST00000519485 FAM205CA6NFA0 338 aa10.59□□□□□ -0.71
CSMD3-209ENST00000519485 VGFO15240 615 aaPredicted RBP10.59□□□□□ -0.71
CSMD3-209ENST00000519485 HOXB1P14653 301 aaPredicted RBP10.59□□□□□ -0.71
CSMD3-209ENST00000519485 DOK7Q18PE1 504 aa10.59□□□□□ -0.71
CSMD3-209ENST00000519485 MICALL2Q8IY33 904 aa10.57□□□□□ -0.72
CSMD3-209ENST00000519485 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.55□□□□□ -0.72
CSMD3-209ENST00000519485 ZNF710Q8N1W2 664 aa10.55□□□□□ -0.72
CSMD3-209ENST00000519485 ZFP91Q96JP5 570 aaPredicted RBP10.55□□□□□ -0.72
CSMD3-209ENST00000519485 MS4A4AQ96JQ5 239 aa10.54□□□□□ -0.72
CSMD3-209ENST00000519485 ZSWIM6Q9HCJ5 1215 aa10.54□□□□□ -0.72
CSMD3-209ENST00000519485 RIMBP2O15034 1052 aa10.52□□□□□ -0.73
CSMD3-209ENST00000519485 TMEM92Q6UXU6 159 aa10.52□□□□□ -0.73
CSMD3-209ENST00000519485 TAOK2Q9UL54 1235 aa10.5□□□□□ -0.73
CSMD3-209ENST00000519485 PHF8Q9UPP1 1060 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms