RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 PLCD3Q8N3E9 789 aa9.76□□□□□ -0.85
HMGB1P19-201ENST00000517578 PELP1Q8IZL8 1130 aaKnown RBP9.75□□□□□ -0.85
HMGB1P19-201ENST00000517578 KIF12Q96FN5 646 aa9.74□□□□□ -0.85
HMGB1P19-201ENST00000517578 ASTLQ6HA08 431 aaPredicted RBP9.73□□□□□ -0.85
HMGB1P19-201ENST00000517578 POTEB2H3BUK9 544 aa9.71□□□□□ -0.86
HMGB1P19-201ENST00000517578 ATMINO43313 823 aaPredicted RBP9.71□□□□□ -0.86
HMGB1P19-201ENST00000517578 NUBP1P53384 320 aa9.69□□□□□ -0.86
HMGB1P19-201ENST00000517578 MAP3K13O43283 966 aa9.68□□□□□ -0.86
HMGB1P19-201ENST00000517578 ZBTB47Q9UFB7 747 aaPredicted RBP9.67□□□□□ -0.86
HMGB1P19-201ENST00000517578 TRPC6Q9Y210 931 aa9.67□□□□□ -0.86
HMGB1P19-201ENST00000517578 ATN1P54259 1190 aaPredicted RBP9.65□□□□□ -0.86
HMGB1P19-201ENST00000517578 OTUD5Q96G74 571 aa9.64□□□□□ -0.87
HMGB1P19-201ENST00000517578 METRNQ9UJH8 293 aa9.64□□□□□ -0.87
HMGB1P19-201ENST00000517578 BMP2KQ9NSY1 1161 aaPredicted RBP9.63□□□□□ -0.87
HMGB1P19-201ENST00000517578 SLC39A7Q92504 469 aa9.62□□□□□ -0.87
HMGB1P19-201ENST00000517578 C7P10643 843 aa9.61□□□□□ -0.87
HMGB1P19-201ENST00000517578 FBXO3Q9UK99 471 aa9.61□□□□□ -0.87
HMGB1P19-201ENST00000517578 TIE1P35590 1138 aa9.59□□□□□ -0.87
HMGB1P19-201ENST00000517578 POTEJP0CG39 1038 aa9.58□□□□□ -0.88
HMGB1P19-201ENST00000517578 FAM212AQ96EL1 285 aa9.58□□□□□ -0.88
HMGB1P19-201ENST00000517578 SGIP1Q9BQI5 828 aa9.57□□□□□ -0.88
HMGB1P19-201ENST00000517578 PCDHB13Q9Y5F0 798 aa9.57□□□□□ -0.88
HMGB1P19-201ENST00000517578 POTEFA5A3E0 1075 aa9.55□□□□□ -0.88
HMGB1P19-201ENST00000517578 TTLL13PA6NNM8 815 aa9.55□□□□□ -0.88
HMGB1P19-201ENST00000517578 IFNL1Q8IU54 200 aa9.54□□□□□ -0.88
HMGB1P19-201ENST00000517578 VASPP50552 380 aaPredicted RBP9.53□□□□□ -0.88
HMGB1P19-201ENST00000517578 DCAF8Q5TAQ9 597 aa9.49□□□□□ -0.89
HMGB1P19-201ENST00000517578 TRIM35Q9UPQ4 493 aa9.49□□□□□ -0.89
HMGB1P19-201ENST00000517578 PYGBP11216 843 aa9.48□□□□□ -0.89
HMGB1P19-201ENST00000517578 COLQQ9Y215 455 aaPredicted RBP9.47□□□□□ -0.89
HMGB1P19-201ENST00000517578 KLHL34Q8N239 644 aa9.45□□□□□ -0.9
HMGB1P19-201ENST00000517578 MAMSTRQ6ZN01 415 aa9.44□□□□□ -0.9
HMGB1P19-201ENST00000517578 TMEM106CQ9BVX2 250 aa9.44□□□□□ -0.9
HMGB1P19-201ENST00000517578 IER5LQ5T953 404 aa9.43□□□□□ -0.9
HMGB1P19-201ENST00000517578 SEC24BO95487 1268 aa9.41□□□□□ -0.9
HMGB1P19-201ENST00000517578 PCDHB8Q9UN66 801 aa9.41□□□□□ -0.9
HMGB1P19-201ENST00000517578 SCUBE2Q9NQ36 999 aa9.4□□□□□ -0.9
HMGB1P19-201ENST00000517578 GSE1Q14687 1217 aa9.39□□□□□ -0.91
HMGB1P19-201ENST00000517578 IFNLR1Q8IU57 520 aaPredicted RBP9.39□□□□□ -0.91
HMGB1P19-201ENST00000517578 IRX5P78411 483 aaPredicted RBP9.36□□□□□ -0.91
HMGB1P19-201ENST00000517578 POTEMA6NI47 508 aa9.34□□□□□ -0.91
HMGB1P19-201ENST00000517578 CHRM1P11229 460 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P19-201ENST00000517578 LCE2DQ5TA82 110 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P19-201ENST00000517578 POTEGQ6S5H5 508 aa9.32□□□□□ -0.92
HMGB1P19-201ENST00000517578 ZNF467Q7Z7K2 595 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P19-201ENST00000517578 SPOCK2Q92563 424 aa9.32□□□□□ -0.92
HMGB1P19-201ENST00000517578 PLCG2P16885 1265 aa9.31□□□□□ -0.92
HMGB1P19-201ENST00000517578 OCEL1Q9H607 264 aa9.28□□□□□ -0.92
HMGB1P19-201ENST00000517578 FAM163AQ96GL9 167 aaPredicted RBP9.27□□□□□ -0.93
HMGB1P19-201ENST00000517578 CIZ1Q9ULV3 898 aaPredicted RBP9.26□□□□□ -0.93
HMGB1P19-201ENST00000517578 PSEN1P49768 467 aa9.24□□□□□ -0.93
HMGB1P19-201ENST00000517578 PDCD7Q8N8D1 485 aaKnown RBP9.24□□□□□ -0.93
HMGB1P19-201ENST00000517578 SLAIN1Q8ND83 568 aa9.23□□□□□ -0.93
HMGB1P19-201ENST00000517578 PLSCR2Q9NRY7 297 aa9.22□□□□□ -0.93
HMGB1P19-201ENST00000517578 PDAP1Q13442 181 aaKnown RBP9.2□□□□□ -0.94
HMGB1P19-201ENST00000517578 GOLGA2Q08379 1002 aa9.19□□□□□ -0.94
HMGB1P19-201ENST00000517578 MKRN3Q13064 507 aaKnown RBP9.19□□□□□ -0.94
HMGB1P19-201ENST00000517578 ILDR1Q86SU0 546 aaPredicted RBP9.17□□□□□ -0.94
HMGB1P19-201ENST00000517578 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.15□□□□□ -0.94
HMGB1P19-201ENST00000517578 PCDH10Q9P2E7 1040 aa9.15□□□□□ -0.94
HMGB1P19-201ENST00000517578 ST18O60284 1047 aa9.14□□□□□ -0.95
HMGB1P19-201ENST00000517578 CABP2Q9NPB3 220 aa9.14□□□□□ -0.95
HMGB1P19-201ENST00000517578 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.14□□□□□ -0.95
HMGB1P19-201ENST00000517578 TRIM41Q8WV44 630 aa9.12□□□□□ -0.95
HMGB1P19-201ENST00000517578 DPY19L2Q6NUT2 758 aa9.11□□□□□ -0.95
HMGB1P19-201ENST00000517578 L3MBTL3Q96JM7 780 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P19-201ENST00000517578 RNF25Q96BH1 459 aaPredicted RBP9.09□□□□□ -0.95
HMGB1P19-201ENST00000517578 C3orf67Q6ZVT6 689 aa9.08□□□□□ -0.96
HMGB1P19-201ENST00000517578 EFCAB3Q8N7B9 438 aa9.05□□□□□ -0.96
HMGB1P19-201ENST00000517578 CDAN1Q8IWY9 1227 aa9.04□□□□□ -0.96
HMGB1P19-201ENST00000517578 RIOK3O14730 519 aaKnown RBP9.03□□□□□ -0.96
HMGB1P19-201ENST00000517578 SNPHO15079 494 aa9.03□□□□□ -0.96
HMGB1P19-201ENST00000517578 TMEM121BQ9BXQ6 578 aaPredicted RBP9.02□□□□□ -0.97
HMGB1P19-201ENST00000517578 BOLA1Q9Y3E2 137 aa9.02□□□□□ -0.97
HMGB1P19-201ENST00000517578 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9□□□□□ -0.97
HMGB1P19-201ENST00000517578 ZFP91Q96JP5 570 aaPredicted RBP9□□□□□ -0.97
HMGB1P19-201ENST00000517578 MARVELD3Q96A59 401 aa8.99□□□□□ -0.97
HMGB1P19-201ENST00000517578 VGFO15240 615 aaPredicted RBP8.98□□□□□ -0.97
HMGB1P19-201ENST00000517578 G3V3G9 751 aa8.96□□□□□ -0.98
HMGB1P19-201ENST00000517578 MS4A4AQ96JQ5 239 aa8.95□□□□□ -0.98
HMGB1P19-201ENST00000517578 SOX12O15370 315 aa8.94□□□□□ -0.98
HMGB1P19-201ENST00000517578 HOXB3P14651 431 aaPredicted RBP8.93□□□□□ -0.98
HMGB1P19-201ENST00000517578 PHF8Q9UPP1 1060 aa8.93□□□□□ -0.98
HMGB1P19-201ENST00000517578 MICALL2Q8IY33 904 aa8.92□□□□□ -0.98
HMGB1P19-201ENST00000517578 EMP3P54852 163 aa8.9□□□□□ -0.98
HMGB1P19-201ENST00000517578 TMEM92Q6UXU6 159 aa8.9□□□□□ -0.98
HMGB1P19-201ENST00000517578 POTEB3A0JP26 581 aa8.89□□□□□ -0.99
HMGB1P19-201ENST00000517578 POTEBQ6S5H4 581 aa8.89□□□□□ -0.99
HMGB1P19-201ENST00000517578 BCL11BQ9C0K0 894 aaPredicted RBP8.89□□□□□ -0.99
HMGB1P19-201ENST00000517578 PKD2Q13563 968 aa8.88□□□□□ -0.99
HMGB1P19-201ENST00000517578 ECM2O94769 699 aaPredicted RBP8.87□□□□□ -0.99
HMGB1P19-201ENST00000517578 HS3ST6Q96QI5 342 aa8.87□□□□□ -0.99
HMGB1P19-201ENST00000517578 FBXO22Q8NEZ5 403 aa8.86□□□□□ -0.99
HMGB1P19-201ENST00000517578 FAM205CA6NFA0 338 aa8.85□□□□□ -0.99
HMGB1P19-201ENST00000517578 TAOK2Q9UL54 1235 aa8.85□□□□□ -0.99
HMGB1P19-201ENST00000517578 STK24Q9Y6E0 443 aa8.85□□□□□ -0.99
HMGB1P19-201ENST00000517578 RGL2O15211 777 aa8.84□□□□□ -0.99
HMGB1P19-201ENST00000517578 MFRPQ9BY79 579 aa8.84□□□□□ -0.99
HMGB1P19-201ENST00000517578 STK25O00506 426 aa8.83□□□□□ -1
HMGB1P19-201ENST00000517578 HOXB1P14653 301 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms