RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
CPNE3-201ENST00000517354 RGL2O15211 777 aa14.95□□□□□ -0.02
CPNE3-201ENST00000517354 PYGBP11216 843 aa14.95□□□□□ -0.02
CPNE3-201ENST00000517354 CHRM1P11229 460 aaPredicted RBP14.92□□□□□ -0.02
CPNE3-201ENST00000517354 CD44P16070 742 aaKnown RBP14.92□□□□□ -0.02
CPNE3-201ENST00000517354 TAOK2Q9UL54 1235 aa14.91□□□□□ -0.02
CPNE3-201ENST00000517354 ZRANB1Q9UGI0 708 aa14.9□□□□□ -0.02
CPNE3-201ENST00000517354 HAX1O00165 279 aa14.84□□□□□ -0.03
CPNE3-201ENST00000517354 RIOK3O14730 519 aaKnown RBP14.84□□□□□ -0.03
CPNE3-201ENST00000517354 CCDC61Q9Y6R9 512 aa14.84□□□□□ -0.03
CPNE3-201ENST00000517354 C19orf67A6NJJ6 358 aa14.8□□□□□ -0.04
CPNE3-201ENST00000517354 CHGAP10645 457 aaKnown RBP14.78□□□□□ -0.04
CPNE3-201ENST00000517354 ZNF467Q7Z7K2 595 aaPredicted RBP14.77□□□□□ -0.05
CPNE3-201ENST00000517354 VGFO15240 615 aaPredicted RBP14.75□□□□□ -0.05
CPNE3-201ENST00000517354 RNF25Q96BH1 459 aaPredicted RBP14.75□□□□□ -0.05
CPNE3-201ENST00000517354 PCDHB13Q9Y5F0 798 aa14.74□□□□□ -0.05
CPNE3-201ENST00000517354 KIF12Q96FN5 646 aa14.72□□□□□ -0.05
CPNE3-201ENST00000517354 PHF12Q96QT6 1004 aa14.71□□□□□ -0.05
CPNE3-201ENST00000517354 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.71□□□□□ -0.05
CPNE3-201ENST00000517354 MAP3K13O43283 966 aa14.7□□□□□ -0.06
CPNE3-201ENST00000517354 POTEHQ6S545 545 aa14.7□□□□□ -0.06
CPNE3-201ENST00000517354 SGIP1Q9BQI5 828 aa14.7□□□□□ -0.06
CPNE3-201ENST00000517354 PCDHB8Q9UN66 801 aa14.7□□□□□ -0.06
CPNE3-201ENST00000517354 ZNF579Q8NAF0 562 aaKnown RBP14.69□□□□□ -0.06
CPNE3-201ENST00000517354 BBXQ8WY36 941 aaPredicted RBP14.68□□□□□ -0.06
CPNE3-201ENST00000517354 STK25O00506 426 aa14.67□□□□□ -0.06
CPNE3-201ENST00000517354 PDAP1Q13442 181 aaKnown RBP14.64□□□□□ -0.07
CPNE3-201ENST00000517354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.63□□□□□ -0.07
CPNE3-201ENST00000517354 IFNL1Q8IU54 200 aa14.63□□□□□ -0.07
CPNE3-201ENST00000517354 HS6ST3Q8IZP7 471 aa14.63□□□□□ -0.07
CPNE3-201ENST00000517354 ZFP91Q96JP5 570 aaPredicted RBP14.63□□□□□ -0.07
CPNE3-201ENST00000517354 STK24Q9Y6E0 443 aa14.62□□□□□ -0.07
CPNE3-201ENST00000517354 PSEN1P49768 467 aa14.6□□□□□ -0.07
CPNE3-201ENST00000517354 BCL11BQ9C0K0 894 aaPredicted RBP14.59□□□□□ -0.07
CPNE3-201ENST00000517354 CLCN6P51797 869 aa14.56□□□□□ -0.08
CPNE3-201ENST00000517354 EVX2Q03828 476 aa14.55□□□□□ -0.08
CPNE3-201ENST00000517354 CFAP44Q96MT7 982 aa14.54□□□□□ -0.08
CPNE3-201ENST00000517354 PLCB2Q00722 1185 aa14.53□□□□□ -0.08
CPNE3-201ENST00000517354 PAXIP1Q6ZW49 1069 aaPredicted RBP14.53□□□□□ -0.08
CPNE3-201ENST00000517354 MS4A3Q96HJ5 214 aa14.53□□□□□ -0.08
CPNE3-201ENST00000517354 SPRYD3Q8NCJ5 442 aa14.51□□□□□ -0.09
CPNE3-201ENST00000517354 SLC24A1O60721 1099 aa14.5□□□□□ -0.09
CPNE3-201ENST00000517354 GOLGA2Q08379 1002 aa14.45□□□□□ -0.1
CPNE3-201ENST00000517354 TMEM106CQ9BVX2 250 aa14.45□□□□□ -0.1
CPNE3-201ENST00000517354 DNAJC5Q9H3Z4 198 aa14.44□□□□□ -0.1
CPNE3-201ENST00000517354 GALR2O43603 387 aaPredicted RBP14.42□□□□□ -0.1
CPNE3-201ENST00000517354 HAP1P54257 671 aaPredicted RBP14.42□□□□□ -0.1
CPNE3-201ENST00000517354 CABP2Q9NPB3 220 aa14.42□□□□□ -0.1
CPNE3-201ENST00000517354 RYDENQ9NUL5 291 aaKnown RBP14.41□□□□□ -0.1
CPNE3-201ENST00000517354 TIE1P35590 1138 aa14.38□□□□□ -0.11
CPNE3-201ENST00000517354 TRPC6Q9Y210 931 aa14.38□□□□□ -0.11
CPNE3-201ENST00000517354 GABBR2O75899 941 aa14.37□□□□□ -0.11
CPNE3-201ENST00000517354 NKX1-1Q15270 411 aaPredicted RBP14.37□□□□□ -0.11
CPNE3-201ENST00000517354 MKRN3Q13064 507 aaKnown RBP14.34□□□□□ -0.11
CPNE3-201ENST00000517354 EFCAB3Q8N7B9 438 aa14.34□□□□□ -0.11
CPNE3-201ENST00000517354 TTLL13PA6NNM8 815 aa14.32□□□□□ -0.12
CPNE3-201ENST00000517354 SOX12O15370 315 aa14.32□□□□□ -0.12
CPNE3-201ENST00000517354 DCBLD2Q96PD2 775 aa14.31□□□□□ -0.12
CPNE3-201ENST00000517354 BMP2KQ9NSY1 1161 aaPredicted RBP14.31□□□□□ -0.12
CPNE3-201ENST00000517354 GTPBP6O43824 516 aaPredicted RBP14.3□□□□□ -0.12
CPNE3-201ENST00000517354 NLRP6P59044 892 aa14.28□□□□□ -0.12
CPNE3-201ENST00000517354 SP7Q8TDD2 431 aaPredicted RBP14.26□□□□□ -0.13
CPNE3-201ENST00000517354 TRIM35Q9UPQ4 493 aa14.25□□□□□ -0.13
CPNE3-201ENST00000517354 MFRPQ9BY79 579 aa14.22□□□□□ -0.13
CPNE3-201ENST00000517354 PHF8Q9UPP1 1060 aa14.22□□□□□ -0.13
CPNE3-201ENST00000517354 ATMINO43313 823 aaPredicted RBP14.21□□□□□ -0.13
CPNE3-201ENST00000517354 ATN1P54259 1190 aaPredicted RBP14.2□□□□□ -0.14
CPNE3-201ENST00000517354 TSHZ2Q9NRE2 1034 aa14.19□□□□□ -0.14
CPNE3-201ENST00000517354 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.18□□□□□ -0.14
CPNE3-201ENST00000517354 ASTLQ6HA08 431 aaPredicted RBP14.17□□□□□ -0.14
CPNE3-201ENST00000517354 VSIG10Q8N0Z9 540 aa14.15□□□□□ -0.14
CPNE3-201ENST00000517354 FBXO22Q8NEZ5 403 aa14.12□□□□□ -0.15
CPNE3-201ENST00000517354 IER5LQ5T953 404 aa14.1□□□□□ -0.15
CPNE3-201ENST00000517354 SEC24BO95487 1268 aa14.09□□□□□ -0.15
CPNE3-201ENST00000517354 PLCG2P16885 1265 aa14.06□□□□□ -0.16
CPNE3-201ENST00000517354 OCEL1Q9H607 264 aa14.06□□□□□ -0.16
CPNE3-201ENST00000517354 PPP1R37O75864 691 aa14.05□□□□□ -0.16
CPNE3-201ENST00000517354 SLC39A7Q92504 469 aa14.05□□□□□ -0.16
CPNE3-201ENST00000517354 G3V3G9 751 aa14.04□□□□□ -0.16
CPNE3-201ENST00000517354 MS4A4AQ96JQ5 239 aa14.04□□□□□ -0.16
CPNE3-201ENST00000517354 C7P10643 843 aa14.03□□□□□ -0.16
CPNE3-201ENST00000517354 PELP1Q8IZL8 1130 aaKnown RBP14.02□□□□□ -0.17
CPNE3-201ENST00000517354 IRX5P78411 483 aaPredicted RBP14□□□□□ -0.17
CPNE3-201ENST00000517354 POTEIP0CG38 1075 aa13.97□□□□□ -0.17
CPNE3-201ENST00000517354 DPY19L2Q6NUT2 758 aa13.97□□□□□ -0.17
CPNE3-201ENST00000517354 ILDR1Q86SU0 546 aaPredicted RBP13.97□□□□□ -0.17
CPNE3-201ENST00000517354 KDM2AQ9Y2K7 1162 aa13.97□□□□□ -0.17
CPNE3-201ENST00000517354 WDR70Q9NW82 654 aa13.96□□□□□ -0.17
CPNE3-201ENST00000517354 L3MBTL3Q96JM7 780 aaPredicted RBP13.95□□□□□ -0.18
CPNE3-201ENST00000517354 METRNQ9UJH8 293 aa13.95□□□□□ -0.18
CPNE3-201ENST00000517354 PDCD7Q8N8D1 485 aaKnown RBP13.93□□□□□ -0.18
CPNE3-201ENST00000517354 COLQQ9Y215 455 aaPredicted RBP13.9□□□□□ -0.18
CPNE3-201ENST00000517354 BOLA1Q9Y3E2 137 aa13.9□□□□□ -0.18
CPNE3-201ENST00000517354 CADPS2Q86UW7 1296 aa13.89□□□□□ -0.19
CPNE3-201ENST00000517354 PDE4AP27815 886 aa13.88□□□□□ -0.19
CPNE3-201ENST00000517354 MICALL2Q8IY33 904 aa13.85□□□□□ -0.19
CPNE3-201ENST00000517354 LARP6Q9BRS8 491 aaKnown RBP13.82□□□□□ -0.2
CPNE3-201ENST00000517354 POTEFA5A3E0 1075 aa13.79□□□□□ -0.2
CPNE3-201ENST00000517354 TMC2Q8TDI7 906 aa13.79□□□□□ -0.2
CPNE3-201ENST00000517354 TMEM121BQ9BXQ6 578 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms