RNA–Protein interactions for RNA: ENST00000512711.1

PDGFC-208, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-208ENST00000512711 RASEFQ8IZ41 740 aa8.02□□□□□ -1.13
PDGFC-208ENST00000512711 MS4A3Q96HJ5 214 aa8.02□□□□□ -1.13
PDGFC-208ENST00000512711 PLSCR2Q9NRY7 297 aa8.02□□□□□ -1.13
PDGFC-208ENST00000512711 FBXO3Q9UK99 471 aa8.02□□□□□ -1.13
PDGFC-208ENST00000512711 PLEKHG5O94827 1062 aa8□□□□□ -1.13
PDGFC-208ENST00000512711 NUBP1P53384 320 aa7.99□□□□□ -1.13
PDGFC-208ENST00000512711 ATMINO43313 823 aaPredicted RBP7.98□□□□□ -1.13
PDGFC-208ENST00000512711 VASPP50552 380 aaPredicted RBP7.98□□□□□ -1.13
PDGFC-208ENST00000512711 ASTLQ6HA08 431 aaPredicted RBP7.98□□□□□ -1.13
PDGFC-208ENST00000512711 CCDC61Q9Y6R9 512 aa7.97□□□□□ -1.13
PDGFC-208ENST00000512711 POTEJP0CG39 1038 aa7.96□□□□□ -1.14
PDGFC-208ENST00000512711 METRNQ9UJH8 293 aa7.96□□□□□ -1.14
PDGFC-208ENST00000512711 C7P10643 843 aa7.94□□□□□ -1.14
PDGFC-208ENST00000512711 SLC39A7Q92504 469 aa7.94□□□□□ -1.14
PDGFC-208ENST00000512711 IFNLR1Q8IU57 520 aaPredicted RBP7.93□□□□□ -1.14
PDGFC-208ENST00000512711 POTEMA6NI47 508 aa7.92□□□□□ -1.14
PDGFC-208ENST00000512711 ATN1P54259 1190 aaPredicted RBP7.92□□□□□ -1.14
PDGFC-208ENST00000512711 KIF12Q96FN5 646 aa7.92□□□□□ -1.14
PDGFC-208ENST00000512711 KLHL34Q8N239 644 aa7.91□□□□□ -1.14
PDGFC-208ENST00000512711 ZBTB47Q9UFB7 747 aaPredicted RBP7.91□□□□□ -1.14
PDGFC-208ENST00000512711 MAP3K13O43283 966 aa7.9□□□□□ -1.14
PDGFC-208ENST00000512711 POTEGQ6S5H5 508 aa7.9□□□□□ -1.14
PDGFC-208ENST00000512711 TRPC6Q9Y210 931 aa7.89□□□□□ -1.15
PDGFC-208ENST00000512711 DCAF8Q5TAQ9 597 aa7.87□□□□□ -1.15
PDGFC-208ENST00000512711 POTEFA5A3E0 1075 aa7.86□□□□□ -1.15
PDGFC-208ENST00000512711 MAMSTRQ6ZN01 415 aa7.86□□□□□ -1.15
PDGFC-208ENST00000512711 BMP2KQ9NSY1 1161 aaPredicted RBP7.86□□□□□ -1.15
PDGFC-208ENST00000512711 FAM212AQ96EL1 285 aa7.83□□□□□ -1.16
PDGFC-208ENST00000512711 PYGBP11216 843 aa7.82□□□□□ -1.16
PDGFC-208ENST00000512711 FAM163AQ96GL9 167 aaPredicted RBP7.82□□□□□ -1.16
PDGFC-208ENST00000512711 TIE1P35590 1138 aa7.81□□□□□ -1.16
PDGFC-208ENST00000512711 LCE2DQ5TA82 110 aaPredicted RBP7.81□□□□□ -1.16
PDGFC-208ENST00000512711 SCUBE2Q9NQ36 999 aa7.81□□□□□ -1.16
PDGFC-208ENST00000512711 IFNL1Q8IU54 200 aa7.8□□□□□ -1.16
PDGFC-208ENST00000512711 SPOCK2Q92563 424 aa7.79□□□□□ -1.16
PDGFC-208ENST00000512711 COLQQ9Y215 455 aaPredicted RBP7.79□□□□□ -1.16
PDGFC-208ENST00000512711 PCDHB13Q9Y5F0 798 aa7.79□□□□□ -1.16
PDGFC-208ENST00000512711 TTLL13PA6NNM8 815 aa7.78□□□□□ -1.16
PDGFC-208ENST00000512711 PCDH10Q9P2E7 1040 aa7.78□□□□□ -1.16
PDGFC-208ENST00000512711 PCDHB8Q9UN66 801 aa7.76□□□□□ -1.17
PDGFC-208ENST00000512711 SEC24BO95487 1268 aa7.75□□□□□ -1.17
PDGFC-208ENST00000512711 SGIP1Q9BQI5 828 aa7.75□□□□□ -1.17
PDGFC-208ENST00000512711 GSE1Q14687 1217 aa7.74□□□□□ -1.17
PDGFC-208ENST00000512711 CIZ1Q9ULV3 898 aaPredicted RBP7.74□□□□□ -1.17
PDGFC-208ENST00000512711 TRIM35Q9UPQ4 493 aa7.74□□□□□ -1.17
PDGFC-208ENST00000512711 CHRM1P11229 460 aaPredicted RBP7.7□□□□□ -1.18
PDGFC-208ENST00000512711 IER5LQ5T953 404 aa7.69□□□□□ -1.18
PDGFC-208ENST00000512711 TMEM106CQ9BVX2 250 aa7.69□□□□□ -1.18
PDGFC-208ENST00000512711 SLAIN1Q8ND83 568 aa7.64□□□□□ -1.19
PDGFC-208ENST00000512711 IRX5P78411 483 aaPredicted RBP7.62□□□□□ -1.19
PDGFC-208ENST00000512711 CDAN1Q8IWY9 1227 aa7.62□□□□□ -1.19
PDGFC-208ENST00000512711 ST18O60284 1047 aa7.61□□□□□ -1.19
PDGFC-208ENST00000512711 PLCG2P16885 1265 aa7.61□□□□□ -1.19
PDGFC-208ENST00000512711 PSEN1P49768 467 aa7.61□□□□□ -1.19
PDGFC-208ENST00000512711 ZNF467Q7Z7K2 595 aaPredicted RBP7.61□□□□□ -1.19
PDGFC-208ENST00000512711 RNF25Q96BH1 459 aaPredicted RBP7.59□□□□□ -1.19
PDGFC-208ENST00000512711 OCEL1Q9H607 264 aa7.57□□□□□ -1.2
PDGFC-208ENST00000512711 PDAP1Q13442 181 aaKnown RBP7.56□□□□□ -1.2
PDGFC-208ENST00000512711 PKD2Q13563 968 aa7.56□□□□□ -1.2
PDGFC-208ENST00000512711 TRIM41Q8WV44 630 aa7.53□□□□□ -1.2
PDGFC-208ENST00000512711 CABP2Q9NPB3 220 aa7.52□□□□□ -1.21
PDGFC-208ENST00000512711 RIOK3O14730 519 aaKnown RBP7.51□□□□□ -1.21
PDGFC-208ENST00000512711 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.51□□□□□ -1.21
PDGFC-208ENST00000512711 DPY19L2Q6NUT2 758 aa7.5□□□□□ -1.21
PDGFC-208ENST00000512711 PDCD7Q8N8D1 485 aaKnown RBP7.5□□□□□ -1.21
PDGFC-208ENST00000512711 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.49□□□□□ -1.21
PDGFC-208ENST00000512711 ECM2O94769 699 aaPredicted RBP7.49□□□□□ -1.21
PDGFC-208ENST00000512711 MKRN3Q13064 507 aaKnown RBP7.49□□□□□ -1.21
PDGFC-208ENST00000512711 ZFP91Q96JP5 570 aaPredicted RBP7.49□□□□□ -1.21
PDGFC-208ENST00000512711 RGL2O15211 777 aa7.48□□□□□ -1.21
PDGFC-208ENST00000512711 GOLGA2Q08379 1002 aa7.48□□□□□ -1.21
PDGFC-208ENST00000512711 EFCAB3Q8N7B9 438 aa7.48□□□□□ -1.21
PDGFC-208ENST00000512711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.48□□□□□ -1.21
PDGFC-208ENST00000512711 SNPHO15079 494 aa7.47□□□□□ -1.21
PDGFC-208ENST00000512711 ILDR1Q86SU0 546 aaPredicted RBP7.47□□□□□ -1.21
PDGFC-208ENST00000512711 MARVELD3Q96A59 401 aa7.47□□□□□ -1.21
PDGFC-208ENST00000512711 TMEM121BQ9BXQ6 578 aaPredicted RBP7.46□□□□□ -1.22
PDGFC-208ENST00000512711 VGFO15240 615 aaPredicted RBP7.45□□□□□ -1.22
PDGFC-208ENST00000512711 SPNS2Q8IVW8 549 aa7.45□□□□□ -1.22
PDGFC-208ENST00000512711 MMRN1Q13201 1228 aa7.43□□□□□ -1.22
PDGFC-208ENST00000512711 L3MBTL3Q96JM7 780 aaPredicted RBP7.42□□□□□ -1.22
PDGFC-208ENST00000512711 BCL11BQ9C0K0 894 aaPredicted RBP7.41□□□□□ -1.22
PDGFC-208ENST00000512711 C3orf67Q6ZVT6 689 aa7.4□□□□□ -1.22
PDGFC-208ENST00000512711 MS4A4AQ96JQ5 239 aa7.39□□□□□ -1.23
PDGFC-208ENST00000512711 PHF8Q9UPP1 1060 aa7.39□□□□□ -1.23
PDGFC-208ENST00000512711 STK24Q9Y6E0 443 aa7.39□□□□□ -1.23
PDGFC-208ENST00000512711 POTEB3A0JP26 581 aa7.38□□□□□ -1.23
PDGFC-208ENST00000512711 STK25O00506 426 aa7.38□□□□□ -1.23
PDGFC-208ENST00000512711 POTEBQ6S5H4 581 aa7.38□□□□□ -1.23
PDGFC-208ENST00000512711 SOX12O15370 315 aa7.36□□□□□ -1.23
PDGFC-208ENST00000512711 EMP3P54852 163 aa7.36□□□□□ -1.23
PDGFC-208ENST00000512711 FAM205CA6NFA0 338 aa7.35□□□□□ -1.23
PDGFC-208ENST00000512711 BOLA1Q9Y3E2 137 aa7.35□□□□□ -1.23
PDGFC-208ENST00000512711 HS3ST6Q96QI5 342 aa7.34□□□□□ -1.23
PDGFC-208ENST00000512711 MFRPQ9BY79 579 aa7.34□□□□□ -1.23
PDGFC-208ENST00000512711 FBXO22Q8NEZ5 403 aa7.33□□□□□ -1.24
PDGFC-208ENST00000512711 KRTAP3-3Q9BYR6 98 aa7.33□□□□□ -1.24
PDGFC-208ENST00000512711 KRTAP3-2Q9BYR7 98 aa7.33□□□□□ -1.24
PDGFC-208ENST00000512711 TAOK2Q9UL54 1235 aa7.32□□□□□ -1.24
PDGFC-208ENST00000512711 TMEM92Q6UXU6 159 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms