RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 CLCN6P51797 869 aa7.94□□□□□ -1.14
LIMCH1-212ENST00000511424 IFNLR1Q8IU57 520 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-212ENST00000511424 NUBP1P53384 320 aa7.93□□□□□ -1.14
LIMCH1-212ENST00000511424 SPOCK2Q92563 424 aa7.92□□□□□ -1.14
LIMCH1-212ENST00000511424 DCBLD2Q96PD2 775 aa7.9□□□□□ -1.14
LIMCH1-212ENST00000511424 CIZ1Q9ULV3 898 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-212ENST00000511424 CCDC61Q9Y6R9 512 aa7.89□□□□□ -1.15
LIMCH1-212ENST00000511424 GALR2O43603 387 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-212ENST00000511424 GSE1Q14687 1217 aa7.88□□□□□ -1.15
LIMCH1-212ENST00000511424 PYGBP11216 843 aa7.85□□□□□ -1.15
LIMCH1-212ENST00000511424 MS4A3Q96HJ5 214 aa7.85□□□□□ -1.15
LIMCH1-212ENST00000511424 MAP3K13O43283 966 aa7.84□□□□□ -1.15
LIMCH1-212ENST00000511424 KIF12Q96FN5 646 aa7.84□□□□□ -1.15
LIMCH1-212ENST00000511424 PCDHB13Q9Y5F0 798 aa7.84□□□□□ -1.15
LIMCH1-212ENST00000511424 SGIP1Q9BQI5 828 aa7.76□□□□□ -1.17
LIMCH1-212ENST00000511424 IFNL1Q8IU54 200 aa7.75□□□□□ -1.17
LIMCH1-212ENST00000511424 POTEIP0CG38 1075 aa7.74□□□□□ -1.17
LIMCH1-212ENST00000511424 PCDHB8Q9UN66 801 aa7.74□□□□□ -1.17
LIMCH1-212ENST00000511424 TRPC6Q9Y210 931 aa7.73□□□□□ -1.17
LIMCH1-212ENST00000511424 ZNF467Q7Z7K2 595 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-212ENST00000511424 ATMINO43313 823 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-212ENST00000511424 TIE1P35590 1138 aa7.71□□□□□ -1.18
LIMCH1-212ENST00000511424 TRIM41Q8WV44 630 aa7.71□□□□□ -1.18
LIMCH1-212ENST00000511424 TMEM106CQ9BVX2 250 aa7.71□□□□□ -1.18
LIMCH1-212ENST00000511424 ASTLQ6HA08 431 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-212ENST00000511424 BMP2KQ9NSY1 1161 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-212ENST00000511424 TTLL13PA6NNM8 815 aa7.69□□□□□ -1.18
LIMCH1-212ENST00000511424 CHRM1P11229 460 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-212ENST00000511424 ATN1P54259 1190 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-212ENST00000511424 GOLGA2Q08379 1002 aa7.68□□□□□ -1.18
LIMCH1-212ENST00000511424 SLC39A7Q92504 469 aa7.67□□□□□ -1.18
LIMCH1-212ENST00000511424 TRIM35Q9UPQ4 493 aa7.67□□□□□ -1.18
LIMCH1-212ENST00000511424 ECM2O94769 699 aaPredicted RBP7.66□□□□□ -1.18
LIMCH1-212ENST00000511424 SEC24BO95487 1268 aa7.66□□□□□ -1.18
LIMCH1-212ENST00000511424 PELP1Q8IZL8 1130 aaKnown RBP7.66□□□□□ -1.18
LIMCH1-212ENST00000511424 METRNQ9UJH8 293 aa7.66□□□□□ -1.18
LIMCH1-212ENST00000511424 C7P10643 843 aa7.65□□□□□ -1.18
LIMCH1-212ENST00000511424 PSEN1P49768 467 aa7.64□□□□□ -1.19
LIMCH1-212ENST00000511424 LHX8Q68G74 356 aa7.64□□□□□ -1.19
LIMCH1-212ENST00000511424 PDAP1Q13442 181 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-212ENST00000511424 RIOK3O14730 519 aaKnown RBP7.61□□□□□ -1.19
LIMCH1-212ENST00000511424 MKRN3Q13064 507 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-212ENST00000511424 TAOK2Q9UL54 1235 aa7.6□□□□□ -1.19
LIMCH1-212ENST00000511424 PLCG2P16885 1265 aa7.58□□□□□ -1.2
LIMCH1-212ENST00000511424 PKD2Q13563 968 aa7.58□□□□□ -1.2
LIMCH1-212ENST00000511424 CABP2Q9NPB3 220 aa7.58□□□□□ -1.2
LIMCH1-212ENST00000511424 VGFO15240 615 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-212ENST00000511424 IER5LQ5T953 404 aa7.57□□□□□ -1.2
LIMCH1-212ENST00000511424 RNF25Q96BH1 459 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-212ENST00000511424 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-212ENST00000511424 ZFP91Q96JP5 570 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-212ENST00000511424 RGL2O15211 777 aa7.53□□□□□ -1.2
LIMCH1-212ENST00000511424 DCAF8L2P0C7V8 631 aa7.53□□□□□ -1.2
LIMCH1-212ENST00000511424 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.53□□□□□ -1.2
LIMCH1-212ENST00000511424 COLQQ9Y215 455 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-212ENST00000511424 STK25O00506 426 aa7.52□□□□□ -1.21
LIMCH1-212ENST00000511424 OCEL1Q9H607 264 aa7.52□□□□□ -1.21
LIMCH1-212ENST00000511424 STK24Q9Y6E0 443 aa7.52□□□□□ -1.21
LIMCH1-212ENST00000511424 POTEB2H3BUK9 544 aa7.51□□□□□ -1.21
LIMCH1-212ENST00000511424 SCUBE2Q9NQ36 999 aa7.51□□□□□ -1.21
LIMCH1-212ENST00000511424 MAMSTRQ6ZN01 415 aa7.5□□□□□ -1.21
LIMCH1-212ENST00000511424 BCL11BQ9C0K0 894 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-212ENST00000511424 G3V3G9 751 aa7.49□□□□□ -1.21
LIMCH1-212ENST00000511424 IRX5P78411 483 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-212ENST00000511424 EFCAB3Q8N7B9 438 aa7.49□□□□□ -1.21
LIMCH1-212ENST00000511424 POTEFA5A3E0 1075 aa7.48□□□□□ -1.21
LIMCH1-212ENST00000511424 OTUD5Q96G74 571 aa7.45□□□□□ -1.22
LIMCH1-212ENST00000511424 L3MBTL3Q96JM7 780 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-212ENST00000511424 POTEJP0CG39 1038 aa7.43□□□□□ -1.22
LIMCH1-212ENST00000511424 CHGAP10645 457 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-212ENST00000511424 C3orf67Q6ZVT6 689 aa7.43□□□□□ -1.22
LIMCH1-212ENST00000511424 SOX12O15370 315 aa7.42□□□□□ -1.22
LIMCH1-212ENST00000511424 PDCD7Q8N8D1 485 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-212ENST00000511424 AMER1Q5JTC6 1135 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-212ENST00000511424 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-212ENST00000511424 DPY19L2Q6NUT2 758 aa7.4□□□□□ -1.22
LIMCH1-212ENST00000511424 SLAIN1Q8ND83 568 aa7.4□□□□□ -1.22
LIMCH1-212ENST00000511424 PHF8Q9UPP1 1060 aa7.4□□□□□ -1.22
LIMCH1-212ENST00000511424 NLRP6P59044 892 aa7.39□□□□□ -1.23
LIMCH1-212ENST00000511424 BOLA1Q9Y3E2 137 aa7.38□□□□□ -1.23
LIMCH1-212ENST00000511424 HS6ST3Q8IZP7 471 aa7.36□□□□□ -1.23
LIMCH1-212ENST00000511424 RTN4Q9NQC3 1192 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-212ENST00000511424 ILDR1Q86SU0 546 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-212ENST00000511424 MFRPQ9BY79 579 aa7.34□□□□□ -1.23
LIMCH1-212ENST00000511424 FAM163AQ96GL9 167 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-212ENST00000511424 MS4A4AQ96JQ5 239 aa7.31□□□□□ -1.24
LIMCH1-212ENST00000511424 MICALL2Q8IY33 904 aa7.3□□□□□ -1.24
LIMCH1-212ENST00000511424 FBXO22Q8NEZ5 403 aa7.29□□□□□ -1.24
LIMCH1-212ENST00000511424 RYDENQ9NUL5 291 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-212ENST00000511424 SNPHO15079 494 aa7.27□□□□□ -1.25
LIMCH1-212ENST00000511424 TMEM121BQ9BXQ6 578 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-212ENST00000511424 PPP1R37O75864 691 aa7.23□□□□□ -1.25
LIMCH1-212ENST00000511424 NKX1-1Q15270 411 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-212ENST00000511424 ZNF710Q8N1W2 664 aa7.22□□□□□ -1.25
LIMCH1-212ENST00000511424 TMC2Q8TDI7 906 aa7.22□□□□□ -1.25
LIMCH1-212ENST00000511424 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-212ENST00000511424 RIMBP2O15034 1052 aa7.19□□□□□ -1.26
LIMCH1-212ENST00000511424 ST18O60284 1047 aa7.19□□□□□ -1.26
LIMCH1-212ENST00000511424 DNAJC5Q9H3Z4 198 aa7.19□□□□□ -1.26
LIMCH1-212ENST00000511424 POTEMA6NI47 508 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms