RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 FKBP8Q14318 412 aa12.34□□□□□ -0.43
HMGB3P13-201ENST00000511263 ASTLQ6HA08 431 aaPredicted RBP12.34□□□□□ -0.43
HMGB3P13-201ENST00000511263 ATMINO43313 823 aaPredicted RBP12.33□□□□□ -0.44
HMGB3P13-201ENST00000511263 RASEFQ8IZ41 740 aa12.32□□□□□ -0.44
HMGB3P13-201ENST00000511263 KIF12Q96FN5 646 aa12.3□□□□□ -0.44
HMGB3P13-201ENST00000511263 METRNQ9UJH8 293 aa12.28□□□□□ -0.44
HMGB3P13-201ENST00000511263 TRPC6Q9Y210 931 aa12.28□□□□□ -0.44
HMGB3P13-201ENST00000511263 PLEKHG5O94827 1062 aa12.26□□□□□ -0.45
HMGB3P13-201ENST00000511263 ATN1P54259 1190 aaPredicted RBP12.25□□□□□ -0.45
HMGB3P13-201ENST00000511263 MAP3K13O43283 966 aa12.24□□□□□ -0.45
HMGB3P13-201ENST00000511263 POTEJP0CG39 1038 aa12.24□□□□□ -0.45
HMGB3P13-201ENST00000511263 PLCD3Q8N3E9 789 aa12.24□□□□□ -0.45
HMGB3P13-201ENST00000511263 SLC39A7Q92504 469 aa12.22□□□□□ -0.45
HMGB3P13-201ENST00000511263 C7P10643 843 aa12.21□□□□□ -0.45
HMGB3P13-201ENST00000511263 BMP2KQ9NSY1 1161 aaPredicted RBP12.21□□□□□ -0.45
HMGB3P13-201ENST00000511263 NUBP1P53384 320 aa12.17□□□□□ -0.46
HMGB3P13-201ENST00000511263 POTEFA5A3E0 1075 aa12.14□□□□□ -0.47
HMGB3P13-201ENST00000511263 TIE1P35590 1138 aa12.11□□□□□ -0.47
HMGB3P13-201ENST00000511263 TTLL13PA6NNM8 815 aa12.1□□□□□ -0.47
HMGB3P13-201ENST00000511263 FBXO3Q9UK99 471 aa12.1□□□□□ -0.47
HMGB3P13-201ENST00000511263 PCDHB13Q9Y5F0 798 aa12.08□□□□□ -0.48
HMGB3P13-201ENST00000511263 ZBTB47Q9UFB7 747 aaPredicted RBP12.07□□□□□ -0.48
HMGB3P13-201ENST00000511263 COLQQ9Y215 455 aaPredicted RBP12.05□□□□□ -0.48
HMGB3P13-201ENST00000511263 POTEMA6NI47 508 aa12.04□□□□□ -0.48
HMGB3P13-201ENST00000511263 IFNL1Q8IU54 200 aa12.04□□□□□ -0.48
HMGB3P13-201ENST00000511263 PLSCR2Q9NRY7 297 aa12.04□□□□□ -0.48
HMGB3P13-201ENST00000511263 MAMSTRQ6ZN01 415 aa12.02□□□□□ -0.49
HMGB3P13-201ENST00000511263 FAM212AQ96EL1 285 aa12.02□□□□□ -0.49
HMGB3P13-201ENST00000511263 SGIP1Q9BQI5 828 aa12.02□□□□□ -0.49
HMGB3P13-201ENST00000511263 TRIM35Q9UPQ4 493 aa12.01□□□□□ -0.49
HMGB3P13-201ENST00000511263 POTEGQ6S5H5 508 aa12□□□□□ -0.49
HMGB3P13-201ENST00000511263 SCUBE2Q9NQ36 999 aa11.99□□□□□ -0.49
HMGB3P13-201ENST00000511263 LCE2DQ5TA82 110 aaPredicted RBP11.98□□□□□ -0.49
HMGB3P13-201ENST00000511263 SEC24BO95487 1268 aa11.97□□□□□ -0.49
HMGB3P13-201ENST00000511263 TMEM106CQ9BVX2 250 aa11.94□□□□□ -0.5
HMGB3P13-201ENST00000511263 PYGBP11216 843 aa11.93□□□□□ -0.5
HMGB3P13-201ENST00000511263 DCAF8Q5TAQ9 597 aa11.93□□□□□ -0.5
HMGB3P13-201ENST00000511263 IER5LQ5T953 404 aa11.92□□□□□ -0.5
HMGB3P13-201ENST00000511263 FAM163AQ96GL9 167 aaPredicted RBP11.92□□□□□ -0.5
HMGB3P13-201ENST00000511263 PCDHB8Q9UN66 801 aa11.87□□□□□ -0.51
HMGB3P13-201ENST00000511263 VASPP50552 380 aaPredicted RBP11.86□□□□□ -0.51
HMGB3P13-201ENST00000511263 IRX5P78411 483 aaPredicted RBP11.82□□□□□ -0.52
HMGB3P13-201ENST00000511263 KLHL34Q8N239 644 aa11.81□□□□□ -0.52
HMGB3P13-201ENST00000511263 PLCG2P16885 1265 aa11.8□□□□□ -0.52
HMGB3P13-201ENST00000511263 SLAIN1Q8ND83 568 aa11.77□□□□□ -0.53
HMGB3P13-201ENST00000511263 OCEL1Q9H607 264 aa11.74□□□□□ -0.53
HMGB3P13-201ENST00000511263 GSE1Q14687 1217 aa11.73□□□□□ -0.53
HMGB3P13-201ENST00000511263 PCDH10Q9P2E7 1040 aa11.73□□□□□ -0.53
HMGB3P13-201ENST00000511263 ST18O60284 1047 aa11.67□□□□□ -0.54
HMGB3P13-201ENST00000511263 ZNF467Q7Z7K2 595 aaPredicted RBP11.67□□□□□ -0.54
HMGB3P13-201ENST00000511263 IFNLR1Q8IU57 520 aaPredicted RBP11.67□□□□□ -0.54
HMGB3P13-201ENST00000511263 CHRM1P11229 460 aaPredicted RBP11.66□□□□□ -0.54
HMGB3P13-201ENST00000511263 PDCD7Q8N8D1 485 aaKnown RBP11.66□□□□□ -0.54
HMGB3P13-201ENST00000511263 PSEN1P49768 467 aa11.63□□□□□ -0.55
HMGB3P13-201ENST00000511263 CDAN1Q8IWY9 1227 aa11.61□□□□□ -0.55
HMGB3P13-201ENST00000511263 SPOCK2Q92563 424 aa11.6□□□□□ -0.55
HMGB3P13-201ENST00000511263 MKRN3Q13064 507 aaKnown RBP11.59□□□□□ -0.55
HMGB3P13-201ENST00000511263 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.59□□□□□ -0.55
HMGB3P13-201ENST00000511263 CIZ1Q9ULV3 898 aaPredicted RBP11.59□□□□□ -0.55
HMGB3P13-201ENST00000511263 GOLGA2Q08379 1002 aa11.58□□□□□ -0.56
HMGB3P13-201ENST00000511263 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.56□□□□□ -0.56
HMGB3P13-201ENST00000511263 PDAP1Q13442 181 aaKnown RBP11.54□□□□□ -0.56
HMGB3P13-201ENST00000511263 DPY19L2Q6NUT2 758 aa11.52□□□□□ -0.57
HMGB3P13-201ENST00000511263 C3orf67Q6ZVT6 689 aa11.51□□□□□ -0.57
HMGB3P13-201ENST00000511263 MARVELD3Q96A59 401 aa11.51□□□□□ -0.57
HMGB3P13-201ENST00000511263 CABP2Q9NPB3 220 aa11.51□□□□□ -0.57
HMGB3P13-201ENST00000511263 ILDR1Q86SU0 546 aaPredicted RBP11.5□□□□□ -0.57
HMGB3P13-201ENST00000511263 L3MBTL3Q96JM7 780 aaPredicted RBP11.5□□□□□ -0.57
HMGB3P13-201ENST00000511263 SNPHO15079 494 aa11.48□□□□□ -0.57
HMGB3P13-201ENST00000511263 TMEM121BQ9BXQ6 578 aaPredicted RBP11.47□□□□□ -0.57
HMGB3P13-201ENST00000511263 AMER1Q5JTC6 1135 aaPredicted RBP11.41□□□□□ -0.58
HMGB3P13-201ENST00000511263 BOLA1Q9Y3E2 137 aa11.38□□□□□ -0.59
HMGB3P13-201ENST00000511263 EFCAB3Q8N7B9 438 aa11.37□□□□□ -0.59
HMGB3P13-201ENST00000511263 POTEB3A0JP26 581 aa11.36□□□□□ -0.59
HMGB3P13-201ENST00000511263 POTEBQ6S5H4 581 aa11.36□□□□□ -0.59
HMGB3P13-201ENST00000511263 TRIM41Q8WV44 630 aa11.36□□□□□ -0.59
HMGB3P13-201ENST00000511263 EMP3P54852 163 aa11.35□□□□□ -0.59
HMGB3P13-201ENST00000511263 SPNS2Q8IVW8 549 aa11.33□□□□□ -0.6
HMGB3P13-201ENST00000511263 RNF25Q96BH1 459 aaPredicted RBP11.33□□□□□ -0.6
HMGB3P13-201ENST00000511263 HOXB3P14651 431 aaPredicted RBP11.32□□□□□ -0.6
HMGB3P13-201ENST00000511263 G3V3G9 751 aa11.31□□□□□ -0.6
HMGB3P13-201ENST00000511263 FAM205CA6NFA0 338 aa11.3□□□□□ -0.6
HMGB3P13-201ENST00000511263 MMRN1Q13201 1228 aa11.3□□□□□ -0.6
HMGB3P13-201ENST00000511263 HS3ST6Q96QI5 342 aa11.3□□□□□ -0.6
HMGB3P13-201ENST00000511263 KRTAP3-3Q9BYR6 98 aa11.27□□□□□ -0.61
HMGB3P13-201ENST00000511263 KRTAP3-2Q9BYR7 98 aa11.27□□□□□ -0.61
HMGB3P13-201ENST00000511263 RIOK3O14730 519 aaKnown RBP11.26□□□□□ -0.61
HMGB3P13-201ENST00000511263 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P13-201ENST00000511263 ZFP91Q96JP5 570 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P13-201ENST00000511263 TMEM92Q6UXU6 159 aa11.24□□□□□ -0.61
HMGB3P13-201ENST00000511263 MS4A4AQ96JQ5 239 aa11.24□□□□□ -0.61
HMGB3P13-201ENST00000511263 MICALL2Q8IY33 904 aa11.22□□□□□ -0.61
HMGB3P13-201ENST00000511263 PHF8Q9UPP1 1060 aa11.21□□□□□ -0.61
HMGB3P13-201ENST00000511263 VGFO15240 615 aaPredicted RBP11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 ECM2O94769 699 aaPredicted RBP11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 HOXB1P14653 301 aaPredicted RBP11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 ZNF710Q8N1W2 664 aa11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 TAOK2Q9UL54 1235 aa11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 SOX12O15370 315 aa11.17□□□□□ -0.62
HMGB3P13-201ENST00000511263 DOK7Q18PE1 504 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms