RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 FKBP8Q14318 412 aa12.34□□□□□ -0.43
HMGB3P13-201ENST00000511263 ASTLQ6HA08 431 aaPredicted RBP12.34□□□□□ -0.43
HMGB3P13-201ENST00000511263 ATMINO43313 823 aaPredicted RBP12.33□□□□□ -0.44
HMGB3P13-201ENST00000511263 RASEFQ8IZ41 740 aa12.32□□□□□ -0.44
HMGB3P13-201ENST00000511263 KIF12Q96FN5 646 aa12.3□□□□□ -0.44
HMGB3P13-201ENST00000511263 METRNQ9UJH8 293 aa12.28□□□□□ -0.44
HMGB3P13-201ENST00000511263 TRPC6Q9Y210 931 aa12.28□□□□□ -0.44
HMGB3P13-201ENST00000511263 PLEKHG5O94827 1062 aa12.26□□□□□ -0.45
HMGB3P13-201ENST00000511263 ATN1P54259 1190 aaPredicted RBP12.25□□□□□ -0.45
HMGB3P13-201ENST00000511263 MAP3K13O43283 966 aa12.24□□□□□ -0.45
HMGB3P13-201ENST00000511263 POTEJP0CG39 1038 aa12.24□□□□□ -0.45
HMGB3P13-201ENST00000511263 PLCD3Q8N3E9 789 aa12.24□□□□□ -0.45
HMGB3P13-201ENST00000511263 SLC39A7Q92504 469 aa12.22□□□□□ -0.45
HMGB3P13-201ENST00000511263 C7P10643 843 aa12.21□□□□□ -0.45
HMGB3P13-201ENST00000511263 BMP2KQ9NSY1 1161 aaPredicted RBP12.21□□□□□ -0.45
HMGB3P13-201ENST00000511263 NUBP1P53384 320 aa12.17□□□□□ -0.46
HMGB3P13-201ENST00000511263 POTEFA5A3E0 1075 aa12.14□□□□□ -0.47
HMGB3P13-201ENST00000511263 TIE1P35590 1138 aa12.11□□□□□ -0.47
HMGB3P13-201ENST00000511263 TTLL13PA6NNM8 815 aa12.1□□□□□ -0.47
HMGB3P13-201ENST00000511263 FBXO3Q9UK99 471 aa12.1□□□□□ -0.47
HMGB3P13-201ENST00000511263 PCDHB13Q9Y5F0 798 aa12.08□□□□□ -0.48
HMGB3P13-201ENST00000511263 ZBTB47Q9UFB7 747 aaPredicted RBP12.07□□□□□ -0.48
HMGB3P13-201ENST00000511263 COLQQ9Y215 455 aaPredicted RBP12.05□□□□□ -0.48
HMGB3P13-201ENST00000511263 POTEMA6NI47 508 aa12.04□□□□□ -0.48
HMGB3P13-201ENST00000511263 IFNL1Q8IU54 200 aa12.04□□□□□ -0.48
HMGB3P13-201ENST00000511263 PLSCR2Q9NRY7 297 aa12.04□□□□□ -0.48
HMGB3P13-201ENST00000511263 MAMSTRQ6ZN01 415 aa12.02□□□□□ -0.49
HMGB3P13-201ENST00000511263 FAM212AQ96EL1 285 aa12.02□□□□□ -0.49
HMGB3P13-201ENST00000511263 SGIP1Q9BQI5 828 aa12.02□□□□□ -0.49
HMGB3P13-201ENST00000511263 TRIM35Q9UPQ4 493 aa12.01□□□□□ -0.49
HMGB3P13-201ENST00000511263 POTEGQ6S5H5 508 aa12□□□□□ -0.49
HMGB3P13-201ENST00000511263 SCUBE2Q9NQ36 999 aa11.99□□□□□ -0.49
HMGB3P13-201ENST00000511263 LCE2DQ5TA82 110 aaPredicted RBP11.98□□□□□ -0.49
HMGB3P13-201ENST00000511263 SEC24BO95487 1268 aa11.97□□□□□ -0.49
HMGB3P13-201ENST00000511263 TMEM106CQ9BVX2 250 aa11.94□□□□□ -0.5
HMGB3P13-201ENST00000511263 PYGBP11216 843 aa11.93□□□□□ -0.5
HMGB3P13-201ENST00000511263 DCAF8Q5TAQ9 597 aa11.93□□□□□ -0.5
HMGB3P13-201ENST00000511263 IER5LQ5T953 404 aa11.92□□□□□ -0.5
HMGB3P13-201ENST00000511263 FAM163AQ96GL9 167 aaPredicted RBP11.92□□□□□ -0.5
HMGB3P13-201ENST00000511263 PCDHB8Q9UN66 801 aa11.87□□□□□ -0.51
HMGB3P13-201ENST00000511263 VASPP50552 380 aaPredicted RBP11.86□□□□□ -0.51
HMGB3P13-201ENST00000511263 IRX5P78411 483 aaPredicted RBP11.82□□□□□ -0.52
HMGB3P13-201ENST00000511263 KLHL34Q8N239 644 aa11.81□□□□□ -0.52
HMGB3P13-201ENST00000511263 PLCG2P16885 1265 aa11.8□□□□□ -0.52
HMGB3P13-201ENST00000511263 SLAIN1Q8ND83 568 aa11.77□□□□□ -0.53
HMGB3P13-201ENST00000511263 OCEL1Q9H607 264 aa11.74□□□□□ -0.53
HMGB3P13-201ENST00000511263 GSE1Q14687 1217 aa11.73□□□□□ -0.53
HMGB3P13-201ENST00000511263 PCDH10Q9P2E7 1040 aa11.73□□□□□ -0.53
HMGB3P13-201ENST00000511263 ST18O60284 1047 aa11.67□□□□□ -0.54
HMGB3P13-201ENST00000511263 ZNF467Q7Z7K2 595 aaPredicted RBP11.67□□□□□ -0.54
HMGB3P13-201ENST00000511263 IFNLR1Q8IU57 520 aaPredicted RBP11.67□□□□□ -0.54
HMGB3P13-201ENST00000511263 CHRM1P11229 460 aaPredicted RBP11.66□□□□□ -0.54
HMGB3P13-201ENST00000511263 PDCD7Q8N8D1 485 aaKnown RBP11.66□□□□□ -0.54
HMGB3P13-201ENST00000511263 PSEN1P49768 467 aa11.63□□□□□ -0.55
HMGB3P13-201ENST00000511263 CDAN1Q8IWY9 1227 aa11.61□□□□□ -0.55
HMGB3P13-201ENST00000511263 SPOCK2Q92563 424 aa11.6□□□□□ -0.55
HMGB3P13-201ENST00000511263 MKRN3Q13064 507 aaKnown RBP11.59□□□□□ -0.55
HMGB3P13-201ENST00000511263 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.59□□□□□ -0.55
HMGB3P13-201ENST00000511263 CIZ1Q9ULV3 898 aaPredicted RBP11.59□□□□□ -0.55
HMGB3P13-201ENST00000511263 GOLGA2Q08379 1002 aa11.58□□□□□ -0.56
HMGB3P13-201ENST00000511263 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.56□□□□□ -0.56
HMGB3P13-201ENST00000511263 PDAP1Q13442 181 aaKnown RBP11.54□□□□□ -0.56
HMGB3P13-201ENST00000511263 DPY19L2Q6NUT2 758 aa11.52□□□□□ -0.57
HMGB3P13-201ENST00000511263 C3orf67Q6ZVT6 689 aa11.51□□□□□ -0.57
HMGB3P13-201ENST00000511263 MARVELD3Q96A59 401 aa11.51□□□□□ -0.57
HMGB3P13-201ENST00000511263 CABP2Q9NPB3 220 aa11.51□□□□□ -0.57
HMGB3P13-201ENST00000511263 ILDR1Q86SU0 546 aaPredicted RBP11.5□□□□□ -0.57
HMGB3P13-201ENST00000511263 L3MBTL3Q96JM7 780 aaPredicted RBP11.5□□□□□ -0.57
HMGB3P13-201ENST00000511263 SNPHO15079 494 aa11.48□□□□□ -0.57
HMGB3P13-201ENST00000511263 TMEM121BQ9BXQ6 578 aaPredicted RBP11.47□□□□□ -0.57
HMGB3P13-201ENST00000511263 AMER1Q5JTC6 1135 aaPredicted RBP11.41□□□□□ -0.58
HMGB3P13-201ENST00000511263 BOLA1Q9Y3E2 137 aa11.38□□□□□ -0.59
HMGB3P13-201ENST00000511263 EFCAB3Q8N7B9 438 aa11.37□□□□□ -0.59
HMGB3P13-201ENST00000511263 POTEB3A0JP26 581 aa11.36□□□□□ -0.59
HMGB3P13-201ENST00000511263 POTEBQ6S5H4 581 aa11.36□□□□□ -0.59
HMGB3P13-201ENST00000511263 TRIM41Q8WV44 630 aa11.36□□□□□ -0.59
HMGB3P13-201ENST00000511263 EMP3P54852 163 aa11.35□□□□□ -0.59
HMGB3P13-201ENST00000511263 SPNS2Q8IVW8 549 aa11.33□□□□□ -0.6
HMGB3P13-201ENST00000511263 RNF25Q96BH1 459 aaPredicted RBP11.33□□□□□ -0.6
HMGB3P13-201ENST00000511263 HOXB3P14651 431 aaPredicted RBP11.32□□□□□ -0.6
HMGB3P13-201ENST00000511263 G3V3G9 751 aa11.31□□□□□ -0.6
HMGB3P13-201ENST00000511263 FAM205CA6NFA0 338 aa11.3□□□□□ -0.6
HMGB3P13-201ENST00000511263 MMRN1Q13201 1228 aa11.3□□□□□ -0.6
HMGB3P13-201ENST00000511263 HS3ST6Q96QI5 342 aa11.3□□□□□ -0.6
HMGB3P13-201ENST00000511263 KRTAP3-3Q9BYR6 98 aa11.27□□□□□ -0.61
HMGB3P13-201ENST00000511263 KRTAP3-2Q9BYR7 98 aa11.27□□□□□ -0.61
HMGB3P13-201ENST00000511263 RIOK3O14730 519 aaKnown RBP11.26□□□□□ -0.61
HMGB3P13-201ENST00000511263 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P13-201ENST00000511263 ZFP91Q96JP5 570 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P13-201ENST00000511263 TMEM92Q6UXU6 159 aa11.24□□□□□ -0.61
HMGB3P13-201ENST00000511263 MS4A4AQ96JQ5 239 aa11.24□□□□□ -0.61
HMGB3P13-201ENST00000511263 MICALL2Q8IY33 904 aa11.22□□□□□ -0.61
HMGB3P13-201ENST00000511263 PHF8Q9UPP1 1060 aa11.21□□□□□ -0.61
HMGB3P13-201ENST00000511263 VGFO15240 615 aaPredicted RBP11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 ECM2O94769 699 aaPredicted RBP11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 HOXB1P14653 301 aaPredicted RBP11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 ZNF710Q8N1W2 664 aa11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 TAOK2Q9UL54 1235 aa11.19□□□□□ -0.62
HMGB3P13-201ENST00000511263 SOX12O15370 315 aa11.17□□□□□ -0.62
HMGB3P13-201ENST00000511263 DOK7Q18PE1 504 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms