RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 FBXO3Q9UK99 471 aa22.56■■□□□ 1.2
USP53-206ENST00000510737 NUBP1P53384 320 aa22.55■■□□□ 1.2
USP53-206ENST00000510737 KIF12Q96FN5 646 aa22.48■■□□□ 1.19
USP53-206ENST00000510737 ZBTB47Q9UFB7 747 aaPredicted RBP22.48■■□□□ 1.19
USP53-206ENST00000510737 LHX8Q68G74 356 aa22.44■■□□□ 1.18
USP53-206ENST00000510737 VASPP50552 380 aaPredicted RBP22.42■■□□□ 1.18
USP53-206ENST00000510737 PELP1Q8IZL8 1130 aaKnown RBP22.38■■□□□ 1.17
USP53-206ENST00000510737 MAP3K13O43283 966 aa22.37■■□□□ 1.17
USP53-206ENST00000510737 TRPC6Q9Y210 931 aa22.33■■□□□ 1.17
USP53-206ENST00000510737 ASTLQ6HA08 431 aaPredicted RBP22.3■■□□□ 1.16
USP53-206ENST00000510737 ATMINO43313 823 aaPredicted RBP22.28■■□□□ 1.16
USP53-206ENST00000510737 FAM212AQ96EL1 285 aa22.24■■□□□ 1.15
USP53-206ENST00000510737 KLHL34Q8N239 644 aa22.17■■□□□ 1.14
USP53-206ENST00000510737 BMP2KQ9NSY1 1161 aaPredicted RBP22.17■■□□□ 1.14
USP53-206ENST00000510737 POTEB2H3BUK9 544 aa22.16■■□□□ 1.14
USP53-206ENST00000510737 ATN1P54259 1190 aaPredicted RBP22.16■■□□□ 1.14
USP53-206ENST00000510737 DCAF8Q5TAQ9 597 aa22.13■■□□□ 1.13
USP53-206ENST00000510737 PCDHB13Q9Y5F0 798 aa22.13■■□□□ 1.13
USP53-206ENST00000510737 IFNLR1Q8IU57 520 aaPredicted RBP22.12■■□□□ 1.13
USP53-206ENST00000510737 IFNL1Q8IU54 200 aa22.09■■□□□ 1.13
USP53-206ENST00000510737 SGIP1Q9BQI5 828 aa22.09■■□□□ 1.13
USP53-206ENST00000510737 TIE1P35590 1138 aa22.06■■□□□ 1.12
USP53-206ENST00000510737 METRNQ9UJH8 293 aa22.06■■□□□ 1.12
USP53-206ENST00000510737 PYGBP11216 843 aa22.05■■□□□ 1.12
USP53-206ENST00000510737 SLC39A7Q92504 469 aa22.02■■□□□ 1.12
USP53-206ENST00000510737 TTLL13PA6NNM8 815 aa22.01■■□□□ 1.11
USP53-206ENST00000510737 C7P10643 843 aa21.99■■□□□ 1.11
USP53-206ENST00000510737 POTEFA5A3E0 1075 aa21.93■■□□□ 1.1
USP53-206ENST00000510737 OTUD5Q96G74 571 aa21.93■■□□□ 1.1
USP53-206ENST00000510737 POTEJP0CG39 1038 aa21.92■■□□□ 1.1
USP53-206ENST00000510737 GSE1Q14687 1217 aa21.89■■□□□ 1.09
USP53-206ENST00000510737 SPOCK2Q92563 424 aa21.89■■□□□ 1.09
USP53-206ENST00000510737 PCDHB8Q9UN66 801 aa21.88■■□□□ 1.09
USP53-206ENST00000510737 TRIM35Q9UPQ4 493 aa21.85■■□□□ 1.09
USP53-206ENST00000510737 TMEM106CQ9BVX2 250 aa21.83■■□□□ 1.09
USP53-206ENST00000510737 COLQQ9Y215 455 aaPredicted RBP21.8■■□□□ 1.08
USP53-206ENST00000510737 CHRM1P11229 460 aaPredicted RBP21.75■■□□□ 1.07
USP53-206ENST00000510737 CIZ1Q9ULV3 898 aaPredicted RBP21.71■■□□□ 1.07
USP53-206ENST00000510737 IER5LQ5T953 404 aa21.67■■□□□ 1.06
USP53-206ENST00000510737 ZNF467Q7Z7K2 595 aaPredicted RBP21.63■■□□□ 1.05
USP53-206ENST00000510737 SEC24BO95487 1268 aa21.62■■□□□ 1.05
USP53-206ENST00000510737 IRX5P78411 483 aaPredicted RBP21.56■■□□□ 1.04
USP53-206ENST00000510737 MAMSTRQ6ZN01 415 aa21.52■■□□□ 1.04
USP53-206ENST00000510737 PSEN1P49768 467 aa21.51■■□□□ 1.03
USP53-206ENST00000510737 SCUBE2Q9NQ36 999 aa21.45■■□□□ 1.02
USP53-206ENST00000510737 PLCG2P16885 1265 aa21.44■■□□□ 1.02
USP53-206ENST00000510737 PDAP1Q13442 181 aaKnown RBP21.41■■□□□ 1.02
USP53-206ENST00000510737 OCEL1Q9H607 264 aa21.4■■□□□ 1.02
USP53-206ENST00000510737 PDCD7Q8N8D1 485 aaKnown RBP21.33■■□□□ 1.01
USP53-206ENST00000510737 TRIM41Q8WV44 630 aa21.33■■□□□ 1.01
USP53-206ENST00000510737 RNF25Q96BH1 459 aaPredicted RBP21.31■■□□□ 1
USP53-206ENST00000510737 MKRN3Q13064 507 aaKnown RBP21.28■■□□□ 1
USP53-206ENST00000510737 GOLGA2Q08379 1002 aa21.26■□□□□ 0.99
USP53-206ENST00000510737 LCE2DQ5TA82 110 aaPredicted RBP21.25■□□□□ 0.99
USP53-206ENST00000510737 CABP2Q9NPB3 220 aa21.25■□□□□ 0.99
USP53-206ENST00000510737 ILDR1Q86SU0 546 aaPredicted RBP21.21■□□□□ 0.99
USP53-206ENST00000510737 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.21■□□□□ 0.99
USP53-206ENST00000510737 SLAIN1Q8ND83 568 aa21.16■□□□□ 0.98
USP53-206ENST00000510737 RIOK3O14730 519 aaKnown RBP21.15■□□□□ 0.98
USP53-206ENST00000510737 DPY19L2Q6NUT2 758 aa21.13■□□□□ 0.97
USP53-206ENST00000510737 FAM163AQ96GL9 167 aaPredicted RBP21.13■□□□□ 0.97
USP53-206ENST00000510737 POTEMA6NI47 508 aa21.1■□□□□ 0.97
USP53-206ENST00000510737 POTEGQ6S5H5 508 aa21.08■□□□□ 0.97
USP53-206ENST00000510737 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.07■□□□□ 0.96
USP53-206ENST00000510737 EFCAB3Q8N7B9 438 aa21.07■□□□□ 0.96
USP53-206ENST00000510737 ZFP91Q96JP5 570 aaPredicted RBP21.07■□□□□ 0.96
USP53-206ENST00000510737 PKD2Q13563 968 aa21.03■□□□□ 0.96
USP53-206ENST00000510737 VGFO15240 615 aaPredicted RBP21.01■□□□□ 0.95
USP53-206ENST00000510737 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.01■□□□□ 0.95
USP53-206ENST00000510737 L3MBTL3Q96JM7 780 aaPredicted RBP21■□□□□ 0.95
USP53-206ENST00000510737 ECM2O94769 699 aaPredicted RBP20.95■□□□□ 0.94
USP53-206ENST00000510737 C3orf67Q6ZVT6 689 aa20.91■□□□□ 0.94
USP53-206ENST00000510737 RGL2O15211 777 aa20.88■□□□□ 0.93
USP53-206ENST00000510737 BOLA1Q9Y3E2 137 aa20.88■□□□□ 0.93
USP53-206ENST00000510737 ST18O60284 1047 aa20.87■□□□□ 0.93
USP53-206ENST00000510737 MS4A4AQ96JQ5 239 aa20.84■□□□□ 0.93
USP53-206ENST00000510737 BCL11BQ9C0K0 894 aaPredicted RBP20.84■□□□□ 0.93
USP53-206ENST00000510737 PHF8Q9UPP1 1060 aa20.83■□□□□ 0.93
USP53-206ENST00000510737 SOX12O15370 315 aa20.8■□□□□ 0.92
USP53-206ENST00000510737 TMEM121BQ9BXQ6 578 aaPredicted RBP20.8■□□□□ 0.92
USP53-206ENST00000510737 STK24Q9Y6E0 443 aa20.76■□□□□ 0.91
USP53-206ENST00000510737 STK25O00506 426 aa20.71■□□□□ 0.91
USP53-206ENST00000510737 G3V3G9 751 aa20.7■□□□□ 0.9
USP53-206ENST00000510737 TAOK2Q9UL54 1235 aa20.7■□□□□ 0.9
USP53-206ENST00000510737 MICALL2Q8IY33 904 aa20.69■□□□□ 0.9
USP53-206ENST00000510737 FBXO22Q8NEZ5 403 aa20.69■□□□□ 0.9
USP53-206ENST00000510737 SNPHO15079 494 aa20.68■□□□□ 0.9
USP53-206ENST00000510737 MFRPQ9BY79 579 aa20.65■□□□□ 0.9
USP53-206ENST00000510737 PLSCR2Q9NRY7 297 aa20.65■□□□□ 0.9
USP53-206ENST00000510737 TMEM92Q6UXU6 159 aa20.64■□□□□ 0.89
USP53-206ENST00000510737 PCDH10Q9P2E7 1040 aa20.61■□□□□ 0.89
USP53-206ENST00000510737 NLRP6P59044 892 aa20.59■□□□□ 0.89
USP53-206ENST00000510737 MARVELD3Q96A59 401 aa20.58■□□□□ 0.89
USP53-206ENST00000510737 HOXB3P14651 431 aaPredicted RBP20.56■□□□□ 0.88
USP53-206ENST00000510737 CDAN1Q8IWY9 1227 aa20.52■□□□□ 0.88
USP53-206ENST00000510737 POTEB3A0JP26 581 aa20.39■□□□□ 0.85
USP53-206ENST00000510737 POTEBQ6S5H4 581 aa20.39■□□□□ 0.85
USP53-206ENST00000510737 EMP3P54852 163 aa20.38■□□□□ 0.85
USP53-206ENST00000510737 HS6ST3Q8IZP7 471 aa20.37■□□□□ 0.85
USP53-206ENST00000510737 PPP1R37O75864 691 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms