RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CCDC61Q9Y6R9 512 aa10.98□□□□□ -0.65
NUP54-208ENST00000508604 ASTLQ6HA08 431 aaPredicted RBP10.92□□□□□ -0.66
NUP54-208ENST00000508604 RASEFQ8IZ41 740 aa10.92□□□□□ -0.66
NUP54-208ENST00000508604 KIF12Q96FN5 646 aa10.92□□□□□ -0.66
NUP54-208ENST00000508604 FBXO3Q9UK99 471 aa10.92□□□□□ -0.66
NUP54-208ENST00000508604 SLC39A7Q92504 469 aa10.91□□□□□ -0.66
NUP54-208ENST00000508604 ATMINO43313 823 aaPredicted RBP10.9□□□□□ -0.66
NUP54-208ENST00000508604 C7P10643 843 aa10.89□□□□□ -0.67
NUP54-208ENST00000508604 PELP1Q8IZL8 1130 aaKnown RBP10.88□□□□□ -0.67
NUP54-208ENST00000508604 METRNQ9UJH8 293 aa10.88□□□□□ -0.67
NUP54-208ENST00000508604 MAP3K13O43283 966 aa10.86□□□□□ -0.67
NUP54-208ENST00000508604 FAM212AQ96EL1 285 aa10.85□□□□□ -0.67
NUP54-208ENST00000508604 TIE1P35590 1138 aa10.82□□□□□ -0.68
NUP54-208ENST00000508604 NUBP1P53384 320 aa10.82□□□□□ -0.68
NUP54-208ENST00000508604 PLSCR2Q9NRY7 297 aa10.82□□□□□ -0.68
NUP54-208ENST00000508604 ATN1P54259 1190 aaPredicted RBP10.82□□□□□ -0.68
NUP54-208ENST00000508604 SGIP1Q9BQI5 828 aa10.82□□□□□ -0.68
NUP54-208ENST00000508604 PCDHB13Q9Y5F0 798 aa10.81□□□□□ -0.68
NUP54-208ENST00000508604 POTEB2H3BUK9 544 aa10.8□□□□□ -0.68
NUP54-208ENST00000508604 OTUD5Q96G74 571 aa10.8□□□□□ -0.68
NUP54-208ENST00000508604 BMP2KQ9NSY1 1161 aaPredicted RBP10.79□□□□□ -0.68
NUP54-208ENST00000508604 MAMSTRQ6ZN01 415 aa10.78□□□□□ -0.68
NUP54-208ENST00000508604 DCAF8Q5TAQ9 597 aa10.76□□□□□ -0.69
NUP54-208ENST00000508604 TRPC6Q9Y210 931 aa10.76□□□□□ -0.69
NUP54-208ENST00000508604 KLHL34Q8N239 644 aa10.74□□□□□ -0.69
NUP54-208ENST00000508604 TTLL13PA6NNM8 815 aa10.73□□□□□ -0.69
NUP54-208ENST00000508604 SEC24BO95487 1268 aa10.73□□□□□ -0.69
NUP54-208ENST00000508604 SCUBE2Q9NQ36 999 aa10.73□□□□□ -0.69
NUP54-208ENST00000508604 VASPP50552 380 aaPredicted RBP10.69□□□□□ -0.7
NUP54-208ENST00000508604 IFNL1Q8IU54 200 aa10.69□□□□□ -0.7
NUP54-208ENST00000508604 TRIM35Q9UPQ4 493 aa10.68□□□□□ -0.7
NUP54-208ENST00000508604 IER5LQ5T953 404 aa10.66□□□□□ -0.7
NUP54-208ENST00000508604 PYGBP11216 843 aa10.66□□□□□ -0.7
NUP54-208ENST00000508604 TMEM106CQ9BVX2 250 aa10.66□□□□□ -0.7
NUP54-208ENST00000508604 GSE1Q14687 1217 aa10.65□□□□□ -0.7
NUP54-208ENST00000508604 POTEJP0CG39 1038 aa10.63□□□□□ -0.71
NUP54-208ENST00000508604 POTEFA5A3E0 1075 aa10.61□□□□□ -0.71
NUP54-208ENST00000508604 COLQQ9Y215 455 aaPredicted RBP10.59□□□□□ -0.71
NUP54-208ENST00000508604 PLCG2P16885 1265 aa10.58□□□□□ -0.72
NUP54-208ENST00000508604 POTEMA6NI47 508 aa10.56□□□□□ -0.72
NUP54-208ENST00000508604 ZNF467Q7Z7K2 595 aaPredicted RBP10.56□□□□□ -0.72
NUP54-208ENST00000508604 PCDHB8Q9UN66 801 aa10.55□□□□□ -0.72
NUP54-208ENST00000508604 POTEGQ6S5H5 508 aa10.53□□□□□ -0.72
NUP54-208ENST00000508604 FAM163AQ96GL9 167 aaPredicted RBP10.53□□□□□ -0.72
NUP54-208ENST00000508604 SPOCK2Q92563 424 aa10.52□□□□□ -0.73
NUP54-208ENST00000508604 GOLGA2Q08379 1002 aa10.51□□□□□ -0.73
NUP54-208ENST00000508604 CHRM1P11229 460 aaPredicted RBP10.5□□□□□ -0.73
NUP54-208ENST00000508604 OCEL1Q9H607 264 aa10.5□□□□□ -0.73
NUP54-208ENST00000508604 IRX5P78411 483 aaPredicted RBP10.48□□□□□ -0.73
NUP54-208ENST00000508604 CIZ1Q9ULV3 898 aaPredicted RBP10.48□□□□□ -0.73
NUP54-208ENST00000508604 MKRN3Q13064 507 aaKnown RBP10.46□□□□□ -0.74
NUP54-208ENST00000508604 IFNLR1Q8IU57 520 aaPredicted RBP10.46□□□□□ -0.74
NUP54-208ENST00000508604 SLAIN1Q8ND83 568 aa10.45□□□□□ -0.74
NUP54-208ENST00000508604 PCDH10Q9P2E7 1040 aa10.45□□□□□ -0.74
NUP54-208ENST00000508604 PSEN1P49768 467 aa10.42□□□□□ -0.74
NUP54-208ENST00000508604 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.4□□□□□ -0.74
NUP54-208ENST00000508604 PDAP1Q13442 181 aaKnown RBP10.39□□□□□ -0.75
NUP54-208ENST00000508604 L3MBTL3Q96JM7 780 aaPredicted RBP10.37□□□□□ -0.75
NUP54-208ENST00000508604 LCE2DQ5TA82 110 aaPredicted RBP10.36□□□□□ -0.75
NUP54-208ENST00000508604 TRIM41Q8WV44 630 aa10.36□□□□□ -0.75
NUP54-208ENST00000508604 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.35□□□□□ -0.752e-8■■■□□ 17
NUP54-208ENST00000508604 SNPHO15079 494 aa10.34□□□□□ -0.75
NUP54-208ENST00000508604 C3orf67Q6ZVT6 689 aa10.34□□□□□ -0.75
NUP54-208ENST00000508604 PDCD7Q8N8D1 485 aaKnown RBP10.31□□□□□ -0.76
NUP54-208ENST00000508604 G3V3G9 751 aa10.3□□□□□ -0.76
NUP54-208ENST00000508604 CABP2Q9NPB3 220 aa10.3□□□□□ -0.76
NUP54-208ENST00000508604 ST18O60284 1047 aa10.28□□□□□ -0.76
NUP54-208ENST00000508604 TMEM121BQ9BXQ6 578 aaPredicted RBP10.24□□□□□ -0.77
NUP54-208ENST00000508604 CDAN1Q8IWY9 1227 aa10.23□□□□□ -0.77
NUP54-208ENST00000508604 ILDR1Q86SU0 546 aaPredicted RBP10.2□□□□□ -0.78
NUP54-208ENST00000508604 BOLA1Q9Y3E2 137 aa10.19□□□□□ -0.78
NUP54-208ENST00000508604 RIOK3O14730 519 aaKnown RBP10.18□□□□□ -0.78
NUP54-208ENST00000508604 DPY19L2Q6NUT2 758 aa10.17□□□□□ -0.78
NUP54-208ENST00000508604 EFCAB3Q8N7B9 438 aa10.15□□□□□ -0.78
NUP54-208ENST00000508604 TAOK2Q9UL54 1235 aa10.15□□□□□ -0.79
NUP54-208ENST00000508604 VGFO15240 615 aaPredicted RBP10.14□□□□□ -0.79
NUP54-208ENST00000508604 MARVELD3Q96A59 401 aa10.12□□□□□ -0.79
NUP54-208ENST00000508604 SOX12O15370 315 aa10.11□□□□□ -0.79
NUP54-208ENST00000508604 EMP3P54852 163 aa10.1□□□□□ -0.79
NUP54-208ENST00000508604 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.09□□□□□ -0.79
NUP54-208ENST00000508604 ZFP91Q96JP5 570 aaPredicted RBP10.09□□□□□ -0.79
NUP54-208ENST00000508604 RNF25Q96BH1 459 aaPredicted RBP10.07□□□□□ -0.8
NUP54-208ENST00000508604 ZNF710Q8N1W2 664 aa10.06□□□□□ -0.8
NUP54-208ENST00000508604 DOK7Q18PE1 504 aa10.04□□□□□ -0.8
NUP54-208ENST00000508604 RIMBP2O15034 1052 aa10.03□□□□□ -0.8
NUP54-208ENST00000508604 FAM205CA6NFA0 338 aa10.02□□□□□ -0.81
NUP54-208ENST00000508604 MICALL2Q8IY33 904 aa10.02□□□□□ -0.81
NUP54-208ENST00000508604 PHF8Q9UPP1 1060 aa10.01□□□□□ -0.81
NUP54-208ENST00000508604 ECM2O94769 699 aaPredicted RBP10□□□□□ -0.81
NUP54-208ENST00000508604 NLRP6P59044 892 aa9.99□□□□□ -0.81
NUP54-208ENST00000508604 HS3ST6Q96QI5 342 aa9.99□□□□□ -0.81
NUP54-208ENST00000508604 BCL11BQ9C0K0 894 aaPredicted RBP9.99□□□□□ -0.81
NUP54-208ENST00000508604 STK24Q9Y6E0 443 aa9.99□□□□□ -0.81
NUP54-208ENST00000508604 HOXB3P14651 431 aaPredicted RBP9.98□□□□□ -0.81
NUP54-208ENST00000508604 STK25O00506 426 aa9.96□□□□□ -0.81
NUP54-208ENST00000508604 HOXB1P14653 301 aaPredicted RBP9.96□□□□□ -0.82
NUP54-208ENST00000508604 SPNS2Q8IVW8 549 aa9.96□□□□□ -0.82
NUP54-208ENST00000508604 MS4A4AQ96JQ5 239 aa9.96□□□□□ -0.82
NUP54-208ENST00000508604 ERBB3P21860 1342 aa9.94□□□□□ -0.82
NUP54-208ENST00000508604 MMRN1Q13201 1228 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms