RNA–Protein interactions for RNA: ENST00000508531.1

PDLIM5-211, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4

Gene PDLIM5, Length 480 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-211ENST00000508531 CCDC61Q9Y6R9 512 aa13.15□□□□□ -0.3
PDLIM5-211ENST00000508531 NUBP1P53384 320 aa13.11□□□□□ -0.31
PDLIM5-211ENST00000508531 MS4A3Q96HJ5 214 aa13.11□□□□□ -0.31
PDLIM5-211ENST00000508531 VASPP50552 380 aaPredicted RBP13.09□□□□□ -0.31
PDLIM5-211ENST00000508531 KIF12Q96FN5 646 aa13.06□□□□□ -0.32
PDLIM5-211ENST00000508531 MAP3K13O43283 966 aa13.01□□□□□ -0.33
PDLIM5-211ENST00000508531 LHX8Q68G74 356 aa13.01□□□□□ -0.33
PDLIM5-211ENST00000508531 KLHL34Q8N239 644 aa13.01□□□□□ -0.33
PDLIM5-211ENST00000508531 FAM212AQ96EL1 285 aa13.01□□□□□ -0.33
PDLIM5-211ENST00000508531 DCAF8Q5TAQ9 597 aa12.95□□□□□ -0.34
PDLIM5-211ENST00000508531 PELP1Q8IZL8 1130 aaKnown RBP12.95□□□□□ -0.34
PDLIM5-211ENST00000508531 ATMINO43313 823 aaPredicted RBP12.94□□□□□ -0.34
PDLIM5-211ENST00000508531 ASTLQ6HA08 431 aaPredicted RBP12.94□□□□□ -0.34
PDLIM5-211ENST00000508531 TRPC6Q9Y210 931 aa12.94□□□□□ -0.34
PDLIM5-211ENST00000508531 PCDHB13Q9Y5F0 798 aa12.91□□□□□ -0.34
PDLIM5-211ENST00000508531 IFNLR1Q8IU57 520 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-211ENST00000508531 ATN1P54259 1190 aaPredicted RBP12.88□□□□□ -0.35
PDLIM5-211ENST00000508531 BMP2KQ9NSY1 1161 aaPredicted RBP12.88□□□□□ -0.35
PDLIM5-211ENST00000508531 PYGBP11216 843 aa12.86□□□□□ -0.35
PDLIM5-211ENST00000508531 SGIP1Q9BQI5 828 aa12.86□□□□□ -0.35
PDLIM5-211ENST00000508531 TIE1P35590 1138 aa12.84□□□□□ -0.35
PDLIM5-211ENST00000508531 IFNL1Q8IU54 200 aa12.84□□□□□ -0.35
PDLIM5-211ENST00000508531 METRNQ9UJH8 293 aa12.83□□□□□ -0.36
PDLIM5-211ENST00000508531 SLC39A7Q92504 469 aa12.82□□□□□ -0.36
PDLIM5-211ENST00000508531 GSE1Q14687 1217 aa12.81□□□□□ -0.36
PDLIM5-211ENST00000508531 SPOCK2Q92563 424 aa12.81□□□□□ -0.36
PDLIM5-211ENST00000508531 TTLL13PA6NNM8 815 aa12.79□□□□□ -0.36
PDLIM5-211ENST00000508531 POTEB2H3BUK9 544 aa12.79□□□□□ -0.36
PDLIM5-211ENST00000508531 C7P10643 843 aa12.79□□□□□ -0.36
PDLIM5-211ENST00000508531 PCDHB8Q9UN66 801 aa12.74□□□□□ -0.37
PDLIM5-211ENST00000508531 CIZ1Q9ULV3 898 aaPredicted RBP12.73□□□□□ -0.37
PDLIM5-211ENST00000508531 TMEM106CQ9BVX2 250 aa12.72□□□□□ -0.37
PDLIM5-211ENST00000508531 TRIM35Q9UPQ4 493 aa12.72□□□□□ -0.37
PDLIM5-211ENST00000508531 POTEFA5A3E0 1075 aa12.68□□□□□ -0.38
PDLIM5-211ENST00000508531 OTUD5Q96G74 571 aa12.68□□□□□ -0.38
PDLIM5-211ENST00000508531 CHRM1P11229 460 aaPredicted RBP12.66□□□□□ -0.38
PDLIM5-211ENST00000508531 POTEJP0CG39 1038 aa12.65□□□□□ -0.38
PDLIM5-211ENST00000508531 ZNF467Q7Z7K2 595 aaPredicted RBP12.64□□□□□ -0.39
PDLIM5-211ENST00000508531 SEC24BO95487 1268 aa12.63□□□□□ -0.39
PDLIM5-211ENST00000508531 COLQQ9Y215 455 aaPredicted RBP12.63□□□□□ -0.39
PDLIM5-211ENST00000508531 IER5LQ5T953 404 aa12.62□□□□□ -0.39
PDLIM5-211ENST00000508531 PSEN1P49768 467 aa12.55□□□□□ -0.4
PDLIM5-211ENST00000508531 MAMSTRQ6ZN01 415 aa12.54□□□□□ -0.4
PDLIM5-211ENST00000508531 PLCG2P16885 1265 aa12.52□□□□□ -0.41
PDLIM5-211ENST00000508531 IRX5P78411 483 aaPredicted RBP12.52□□□□□ -0.41
PDLIM5-211ENST00000508531 SCUBE2Q9NQ36 999 aa12.51□□□□□ -0.41
PDLIM5-211ENST00000508531 PDAP1Q13442 181 aaKnown RBP12.5□□□□□ -0.41
PDLIM5-211ENST00000508531 TRIM41Q8WV44 630 aa12.5□□□□□ -0.41
PDLIM5-211ENST00000508531 GOLGA2Q08379 1002 aa12.48□□□□□ -0.41
PDLIM5-211ENST00000508531 OCEL1Q9H607 264 aa12.46□□□□□ -0.41
PDLIM5-211ENST00000508531 MKRN3Q13064 507 aaKnown RBP12.45□□□□□ -0.42
PDLIM5-211ENST00000508531 CABP2Q9NPB3 220 aa12.41□□□□□ -0.42
PDLIM5-211ENST00000508531 RNF25Q96BH1 459 aaPredicted RBP12.39□□□□□ -0.43
PDLIM5-211ENST00000508531 PDCD7Q8N8D1 485 aaKnown RBP12.37□□□□□ -0.43
PDLIM5-211ENST00000508531 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.37□□□□□ -0.432e-9■■□□□ 12.6
PDLIM5-211ENST00000508531 RIOK3O14730 519 aaKnown RBP12.36□□□□□ -0.43
PDLIM5-211ENST00000508531 SLAIN1Q8ND83 568 aa12.32□□□□□ -0.44
PDLIM5-211ENST00000508531 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-211ENST00000508531 ZFP91Q96JP5 570 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-211ENST00000508531 VGFO15240 615 aaPredicted RBP12.29□□□□□ -0.44
PDLIM5-211ENST00000508531 ECM2O94769 699 aaPredicted RBP12.29□□□□□ -0.44
PDLIM5-211ENST00000508531 FAM163AQ96GL9 167 aaPredicted RBP12.29□□□□□ -0.44
PDLIM5-211ENST00000508531 ILDR1Q86SU0 546 aaPredicted RBP12.28□□□□□ -0.44
PDLIM5-211ENST00000508531 EFCAB3Q8N7B9 438 aa12.28□□□□□ -0.44
PDLIM5-211ENST00000508531 DPY19L2Q6NUT2 758 aa12.27□□□□□ -0.45
PDLIM5-211ENST00000508531 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.27□□□□□ -0.45
PDLIM5-211ENST00000508531 L3MBTL3Q96JM7 780 aaPredicted RBP12.26□□□□□ -0.45
PDLIM5-211ENST00000508531 PKD2Q13563 968 aa12.25□□□□□ -0.45
PDLIM5-211ENST00000508531 POTEMA6NI47 508 aa12.24□□□□□ -0.45
PDLIM5-211ENST00000508531 LCE2DQ5TA82 110 aaPredicted RBP12.24□□□□□ -0.45
PDLIM5-211ENST00000508531 POTEGQ6S5H5 508 aa12.22□□□□□ -0.45
PDLIM5-211ENST00000508531 C3orf67Q6ZVT6 689 aa12.22□□□□□ -0.45
PDLIM5-211ENST00000508531 RGL2O15211 777 aa12.19□□□□□ -0.46
PDLIM5-211ENST00000508531 TAOK2Q9UL54 1235 aa12.19□□□□□ -0.46
PDLIM5-211ENST00000508531 BCL11BQ9C0K0 894 aaPredicted RBP12.18□□□□□ -0.46
PDLIM5-211ENST00000508531 G3V3G9 751 aa12.17□□□□□ -0.46
PDLIM5-211ENST00000508531 BOLA1Q9Y3E2 137 aa12.17□□□□□ -0.46
PDLIM5-211ENST00000508531 STK24Q9Y6E0 443 aa12.16□□□□□ -0.46
PDLIM5-211ENST00000508531 SOX12O15370 315 aa12.15□□□□□ -0.46
PDLIM5-211ENST00000508531 PHF8Q9UPP1 1060 aa12.14□□□□□ -0.47
PDLIM5-211ENST00000508531 STK25O00506 426 aa12.13□□□□□ -0.47
PDLIM5-211ENST00000508531 MS4A4AQ96JQ5 239 aa12.11□□□□□ -0.47
PDLIM5-211ENST00000508531 ST18O60284 1047 aa12.1□□□□□ -0.47
PDLIM5-211ENST00000508531 SNPHO15079 494 aa12.08□□□□□ -0.48
PDLIM5-211ENST00000508531 TMEM121BQ9BXQ6 578 aaPredicted RBP12.06□□□□□ -0.48
PDLIM5-211ENST00000508531 NLRP6P59044 892 aa12.05□□□□□ -0.48
PDLIM5-211ENST00000508531 MICALL2Q8IY33 904 aa12.05□□□□□ -0.48
PDLIM5-211ENST00000508531 FBXO22Q8NEZ5 403 aa12.03□□□□□ -0.48
PDLIM5-211ENST00000508531 MFRPQ9BY79 579 aa12.02□□□□□ -0.49
PDLIM5-211ENST00000508531 PLSCR2Q9NRY7 297 aa11.98□□□□□ -0.49
PDLIM5-211ENST00000508531 TMEM92Q6UXU6 159 aa11.97□□□□□ -0.49
PDLIM5-211ENST00000508531 PCDH10Q9P2E7 1040 aa11.97□□□□□ -0.49
PDLIM5-211ENST00000508531 MARVELD3Q96A59 401 aa11.95□□□□□ -0.5
PDLIM5-211ENST00000508531 HOXB3P14651 431 aaPredicted RBP11.91□□□□□ -0.5
PDLIM5-211ENST00000508531 CDAN1Q8IWY9 1227 aa11.91□□□□□ -0.5
PDLIM5-211ENST00000508531 HS6ST3Q8IZP7 471 aa11.9□□□□□ -0.5
PDLIM5-211ENST00000508531 CHGAP10645 457 aaKnown RBP11.89□□□□□ -0.51
PDLIM5-211ENST00000508531 EMP3P54852 163 aa11.88□□□□□ -0.51
PDLIM5-211ENST00000508531 DOK7Q18PE1 504 aa11.87□□□□□ -0.51
PDLIM5-211ENST00000508531 ZNF710Q8N1W2 664 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms