RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 PELP1Q8IZL8 1130 aaKnown RBP12.52□□□□□ -0.41
NUP54-206ENST00000508465 ATMINO43313 823 aaPredicted RBP12.51□□□□□ -0.41
NUP54-206ENST00000508465 SLC39A7Q92504 469 aa12.51□□□□□ -0.41
NUP54-206ENST00000508465 ZBTB47Q9UFB7 747 aaPredicted RBP12.51□□□□□ -0.41
NUP54-206ENST00000508465 C7P10643 843 aa12.5□□□□□ -0.41
NUP54-206ENST00000508465 KIF12Q96FN5 646 aa12.5□□□□□ -0.41
NUP54-206ENST00000508465 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
NUP54-206ENST00000508465 POTEB2H3BUK9 544 aa12.47□□□□□ -0.41
NUP54-206ENST00000508465 METRNQ9UJH8 293 aa12.47□□□□□ -0.41
NUP54-206ENST00000508465 RASEFQ8IZ41 740 aa12.46□□□□□ -0.41
NUP54-206ENST00000508465 FKBP8Q14318 412 aa12.45□□□□□ -0.42
NUP54-206ENST00000508465 MAP3K13O43283 966 aa12.41□□□□□ -0.42
NUP54-206ENST00000508465 ATN1P54259 1190 aaPredicted RBP12.4□□□□□ -0.42
NUP54-206ENST00000508465 MAMSTRQ6ZN01 415 aa12.38□□□□□ -0.43
NUP54-206ENST00000508465 TIE1P35590 1138 aa12.37□□□□□ -0.43
NUP54-206ENST00000508465 BMP2KQ9NSY1 1161 aaPredicted RBP12.36□□□□□ -0.43
NUP54-206ENST00000508465 SGIP1Q9BQI5 828 aa12.35□□□□□ -0.43
NUP54-206ENST00000508465 NUBP1P53384 320 aa12.33□□□□□ -0.44
NUP54-206ENST00000508465 FAM212AQ96EL1 285 aa12.33□□□□□ -0.44
NUP54-206ENST00000508465 TRPC6Q9Y210 931 aa12.32□□□□□ -0.44
NUP54-206ENST00000508465 FBXO3Q9UK99 471 aa12.31□□□□□ -0.44
NUP54-206ENST00000508465 PCDHB13Q9Y5F0 798 aa12.31□□□□□ -0.44
NUP54-206ENST00000508465 SCUBE2Q9NQ36 999 aa12.29□□□□□ -0.44
NUP54-206ENST00000508465 TTLL13PA6NNM8 815 aa12.27□□□□□ -0.45
NUP54-206ENST00000508465 SEC24BO95487 1268 aa12.26□□□□□ -0.45
NUP54-206ENST00000508465 POTEJP0CG39 1038 aa12.26□□□□□ -0.45
NUP54-206ENST00000508465 POTEMA6NI47 508 aa12.21□□□□□ -0.45
NUP54-206ENST00000508465 IER5LQ5T953 404 aa12.21□□□□□ -0.45
NUP54-206ENST00000508465 DCAF8Q5TAQ9 597 aa12.21□□□□□ -0.45
NUP54-206ENST00000508465 PLSCR2Q9NRY7 297 aa12.21□□□□□ -0.45
NUP54-206ENST00000508465 TRIM35Q9UPQ4 493 aa12.21□□□□□ -0.45
NUP54-206ENST00000508465 POTEFA5A3E0 1075 aa12.2□□□□□ -0.46
NUP54-206ENST00000508465 IFNL1Q8IU54 200 aa12.2□□□□□ -0.46
NUP54-206ENST00000508465 POTEGQ6S5H5 508 aa12.17□□□□□ -0.46
NUP54-206ENST00000508465 TMEM106CQ9BVX2 250 aa12.16□□□□□ -0.46
NUP54-206ENST00000508465 COLQQ9Y215 455 aaPredicted RBP12.15□□□□□ -0.46
NUP54-206ENST00000508465 KLHL34Q8N239 644 aa12.14□□□□□ -0.47
NUP54-206ENST00000508465 FAM163AQ96GL9 167 aaPredicted RBP12.13□□□□□ -0.47
NUP54-206ENST00000508465 PYGBP11216 843 aa12.11□□□□□ -0.47
NUP54-206ENST00000508465 PCDH10Q9P2E7 1040 aa12.1□□□□□ -0.47
NUP54-206ENST00000508465 PLCG2P16885 1265 aa12.08□□□□□ -0.48
NUP54-206ENST00000508465 VASPP50552 380 aaPredicted RBP12.08□□□□□ -0.48
NUP54-206ENST00000508465 GSE1Q14687 1217 aa12.07□□□□□ -0.48
NUP54-206ENST00000508465 PCDHB8Q9UN66 801 aa12.02□□□□□ -0.49
NUP54-206ENST00000508465 IRX5P78411 483 aaPredicted RBP12□□□□□ -0.49
NUP54-206ENST00000508465 OCEL1Q9H607 264 aa12□□□□□ -0.49
NUP54-206ENST00000508465 ZNF467Q7Z7K2 595 aaPredicted RBP11.99□□□□□ -0.49
NUP54-206ENST00000508465 SLAIN1Q8ND83 568 aa11.99□□□□□ -0.49
NUP54-206ENST00000508465 LCE2DQ5TA82 110 aaPredicted RBP11.97□□□□□ -0.49
NUP54-206ENST00000508465 CHRM1P11229 460 aaPredicted RBP11.94□□□□□ -0.5
NUP54-206ENST00000508465 GOLGA2Q08379 1002 aa11.94□□□□□ -0.5
NUP54-206ENST00000508465 MKRN3Q13064 507 aaKnown RBP11.9□□□□□ -0.5
NUP54-206ENST00000508465 SPOCK2Q92563 424 aa11.88□□□□□ -0.51
NUP54-206ENST00000508465 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.88□□□□□ -0.51
NUP54-206ENST00000508465 PSEN1P49768 467 aa11.86□□□□□ -0.51
NUP54-206ENST00000508465 CIZ1Q9ULV3 898 aaPredicted RBP11.85□□□□□ -0.51
NUP54-206ENST00000508465 SNPHO15079 494 aa11.84□□□□□ -0.51
NUP54-206ENST00000508465 ST18O60284 1047 aa11.83□□□□□ -0.52
NUP54-206ENST00000508465 IFNLR1Q8IU57 520 aaPredicted RBP11.83□□□□□ -0.52
NUP54-206ENST00000508465 L3MBTL3Q96JM7 780 aaPredicted RBP11.83□□□□□ -0.52
NUP54-206ENST00000508465 PDAP1Q13442 181 aaKnown RBP11.81□□□□□ -0.52
NUP54-206ENST00000508465 CDAN1Q8IWY9 1227 aa11.8□□□□□ -0.52
NUP54-206ENST00000508465 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.8□□□□□ -0.522e-8■■■□□ 17
NUP54-206ENST00000508465 C3orf67Q6ZVT6 689 aa11.79□□□□□ -0.52
NUP54-206ENST00000508465 PDCD7Q8N8D1 485 aaKnown RBP11.78□□□□□ -0.52
NUP54-206ENST00000508465 TMEM121BQ9BXQ6 578 aaPredicted RBP11.76□□□□□ -0.53
NUP54-206ENST00000508465 TRIM41Q8WV44 630 aa11.71□□□□□ -0.53
NUP54-206ENST00000508465 CABP2Q9NPB3 220 aa11.71□□□□□ -0.53
NUP54-206ENST00000508465 G3V3G9 751 aa11.7□□□□□ -0.54
NUP54-206ENST00000508465 ILDR1Q86SU0 546 aaPredicted RBP11.66□□□□□ -0.54
NUP54-206ENST00000508465 DPY19L2Q6NUT2 758 aa11.62□□□□□ -0.55
NUP54-206ENST00000508465 MARVELD3Q96A59 401 aa11.62□□□□□ -0.55
NUP54-206ENST00000508465 BOLA1Q9Y3E2 137 aa11.62□□□□□ -0.55
NUP54-206ENST00000508465 EMP3P54852 163 aa11.57□□□□□ -0.56
NUP54-206ENST00000508465 EFCAB3Q8N7B9 438 aa11.54□□□□□ -0.56
NUP54-206ENST00000508465 RIOK3O14730 519 aaKnown RBP11.51□□□□□ -0.57
NUP54-206ENST00000508465 SPNS2Q8IVW8 549 aa11.49□□□□□ -0.57
NUP54-206ENST00000508465 ZNF710Q8N1W2 664 aa11.49□□□□□ -0.57
NUP54-206ENST00000508465 FAM205CA6NFA0 338 aa11.48□□□□□ -0.57
NUP54-206ENST00000508465 SOX12O15370 315 aa11.48□□□□□ -0.57
NUP54-206ENST00000508465 MMRN1Q13201 1228 aa11.47□□□□□ -0.57
NUP54-206ENST00000508465 HS3ST6Q96QI5 342 aa11.47□□□□□ -0.57
NUP54-206ENST00000508465 VGFO15240 615 aaPredicted RBP11.46□□□□□ -0.57
NUP54-206ENST00000508465 DOK7Q18PE1 504 aa11.46□□□□□ -0.57
NUP54-206ENST00000508465 TAOK2Q9UL54 1235 aa11.44□□□□□ -0.58
NUP54-206ENST00000508465 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.43□□□□□ -0.58
NUP54-206ENST00000508465 RIMBP2O15034 1052 aa11.43□□□□□ -0.58
NUP54-206ENST00000508465 HOXB3P14651 431 aaPredicted RBP11.43□□□□□ -0.58
NUP54-206ENST00000508465 ZFP91Q96JP5 570 aaPredicted RBP11.43□□□□□ -0.58
NUP54-206ENST00000508465 HOXB1P14653 301 aaPredicted RBP11.41□□□□□ -0.58
NUP54-206ENST00000508465 MICALL2Q8IY33 904 aa11.4□□□□□ -0.58
NUP54-206ENST00000508465 RNF25Q96BH1 459 aaPredicted RBP11.4□□□□□ -0.58
NUP54-206ENST00000508465 POTEB3A0JP26 581 aa11.39□□□□□ -0.59
NUP54-206ENST00000508465 POTEBQ6S5H4 581 aa11.39□□□□□ -0.59
NUP54-206ENST00000508465 ERBB3P21860 1342 aa11.36□□□□□ -0.59
NUP54-206ENST00000508465 PHF8Q9UPP1 1060 aa11.36□□□□□ -0.59
NUP54-206ENST00000508465 KRTAP3-3Q9BYR6 98 aa11.35□□□□□ -0.59
NUP54-206ENST00000508465 KRTAP3-2Q9BYR7 98 aa11.35□□□□□ -0.59
NUP54-206ENST00000508465 NLRP6P59044 892 aa11.34□□□□□ -0.59
NUP54-206ENST00000508465 MS4A4AQ96JQ5 239 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms