RNA–Protein interactions for RNA: ENST00000508170.5

PDGFRA-206, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best) BASIC

Gene PDGFRA, Length 2,202 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-206ENST00000508170 RGS22Q8NE09 1264 aa11.41□□□□□ -0.58
PDGFRA-206ENST00000508170 FAM9AQ8IZU1 332 aaPredicted RBP11.4□□□□□ -0.58
PDGFRA-206ENST00000508170 ARID3CA6NKF2 412 aa11.39□□□□□ -0.59
PDGFRA-206ENST00000508170 RGL2O15211 777 aa11.39□□□□□ -0.59
PDGFRA-206ENST00000508170 POLR3GLQ9BT43 218 aa11.38□□□□□ -0.59
PDGFRA-206ENST00000508170 ZNF428Q96B54 188 aa11.37□□□□□ -0.59
PDGFRA-206ENST00000508170 MTMR7Q9Y216 660 aa11.35□□□□□ -0.59
PDGFRA-206ENST00000508170 SLC4A2P04920 1241 aa11.35□□□□□ -0.59
PDGFRA-206ENST00000508170 LMOD2Q6P5Q4 547 aa11.34□□□□□ -0.59
PDGFRA-206ENST00000508170 RBM25P49756 843 aaKnown RBP11.32□□□□□ -0.6
PDGFRA-206ENST00000508170 MYCNP04198 464 aaPredicted RBP11.31□□□□□ -0.6
PDGFRA-206ENST00000508170 APBB1O00213 710 aa11.31□□□□□ -0.6
PDGFRA-206ENST00000508170 CHGAP10645 457 aaKnown RBP11.29□□□□□ -0.6
PDGFRA-206ENST00000508170 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.29□□□□□ -0.6
PDGFRA-206ENST00000508170 FOXD4L5Q5VV16 416 aaPredicted RBP11.28□□□□□ -0.6
PDGFRA-206ENST00000508170 FOXD4L4Q8WXT5 416 aaPredicted RBP11.28□□□□□ -0.6
PDGFRA-206ENST00000508170 FOXD1Q16676 465 aa11.28□□□□□ -0.6
PDGFRA-206ENST00000508170 NEFLP07196 543 aa11.25□□□□□ -0.61
PDGFRA-206ENST00000508170 SLC24A3Q9HC58 644 aa11.19□□□□□ -0.62
PDGFRA-206ENST00000508170 TMCO4Q5TGY1 634 aa11.18□□□□□ -0.62
PDGFRA-206ENST00000508170 USP35Q9P2H5 1018 aa11.18□□□□□ -0.62
PDGFRA-206ENST00000508170 BCCIPQ9P287 314 aaKnown RBP eCLIP11.17□□□□□ -0.62
PDGFRA-206ENST00000508170 MAPK8IP2Q13387 824 aaPredicted RBP11.17□□□□□ -0.62
PDGFRA-206ENST00000508170 PROM2Q8N271 834 aa11.17□□□□□ -0.62
PDGFRA-206ENST00000508170 MFAP1P55081 439 aaKnown RBP11.16□□□□□ -0.62
PDGFRA-206ENST00000508170 AEBP1Q8IUX7 1158 aa11.16□□□□□ -0.62
PDGFRA-206ENST00000508170 FAM177A1Q8N128 213 aaPredicted RBP11.16□□□□□ -0.62
PDGFRA-206ENST00000508170 ZNF692Q9BU19 519 aaPredicted RBP11.16□□□□□ -0.62
PDGFRA-206ENST00000508170 CCDC82Q8N4S0 544 aa11.14□□□□□ -0.63
PDGFRA-206ENST00000508170 TRAIPQ9BWF2 469 aa11.14□□□□□ -0.63
PDGFRA-206ENST00000508170 SPDYE4A6NLX3 237 aa11.12□□□□□ -0.63
PDGFRA-206ENST00000508170 E9PSI1 815 aa11.11□□□□□ -0.63
PDGFRA-206ENST00000508170 ZC3H15Q8WU90 426 aaKnown RBP11.11□□□□□ -0.63
PDGFRA-206ENST00000508170 BCL11BQ9C0K0 894 aaPredicted RBP11.11□□□□□ -0.63
PDGFRA-206ENST00000508170 ATF5Q9Y2D1 282 aaPredicted RBP11.1□□□□□ -0.63
PDGFRA-206ENST00000508170 SPOCK2Q92563 424 aa11.09□□□□□ -0.63
PDGFRA-206ENST00000508170 PIAS4Q8N2W9 510 aaPredicted RBP11.07□□□□□ -0.64
PDGFRA-206ENST00000508170 CWC22Q9HCG8 908 aaKnown RBP11.06□□□□□ -0.64
PDGFRA-206ENST00000508170 GZF1Q9H116 711 aaPredicted RBP11.05□□□□□ -0.64
PDGFRA-206ENST00000508170 MKRN3Q13064 507 aaKnown RBP11.04□□□□□ -0.64
PDGFRA-206ENST00000508170 P3H3Q8IVL6 736 aa11.04□□□□□ -0.64
PDGFRA-206ENST00000508170 RSPH4AQ5TD94 716 aa11.04□□□□□ -0.64
PDGFRA-206ENST00000508170 ZNF592Q92610 1267 aa11.03□□□□□ -0.64
PDGFRA-206ENST00000508170 BRPF3Q9ULD4 1205 aa11.01□□□□□ -0.65
PDGFRA-206ENST00000508170 PPM1GO15355 546 aaPredicted RBP11.01□□□□□ -0.65
PDGFRA-206ENST00000508170 HS6ST3Q8IZP7 471 aa11.01□□□□□ -0.65
PDGFRA-206ENST00000508170 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.01□□□□□ -0.65
PDGFRA-206ENST00000508170 TICAM2Q86XR7 235 aa11□□□□□ -0.65
PDGFRA-206ENST00000508170 ZFP91Q96JP5 570 aaPredicted RBP11□□□□□ -0.65
PDGFRA-206ENST00000508170 CERS3Q8IU89 383 aa10.99□□□□□ -0.65
PDGFRA-206ENST00000508170 IL27Q8NEV9 243 aa10.99□□□□□ -0.65
PDGFRA-206ENST00000508170 PKNOX2Q96KN3 472 aa10.98□□□□□ -0.65
PDGFRA-206ENST00000508170 FGD1P98174 961 aa10.97□□□□□ -0.65
PDGFRA-206ENST00000508170 NKX1-1Q15270 411 aaPredicted RBP10.97□□□□□ -0.65
PDGFRA-206ENST00000508170 PSMD1Q99460 953 aa10.97□□□□□ -0.65
PDGFRA-206ENST00000508170 GPBP1L1Q9HC44 474 aaPredicted RBP10.97□□□□□ -0.65
PDGFRA-206ENST00000508170 SCAF1Q9H7N4 1312 aaKnown RBP10.96□□□□□ -0.65
PDGFRA-206ENST00000508170 RNF216Q9NWF9 866 aaPredicted RBP10.96□□□□□ -0.66
PDGFRA-206ENST00000508170 IRX6P78412 446 aaPredicted RBP10.95□□□□□ -0.66
PDGFRA-206ENST00000508170 KCNV2Q8TDN2 545 aa10.95□□□□□ -0.66
PDGFRA-206ENST00000508170 GTPBP6O43824 516 aaPredicted RBP10.94□□□□□ -0.66
PDGFRA-206ENST00000508170 WDR70Q9NW82 654 aa10.93□□□□□ -0.66
PDGFRA-206ENST00000508170 CLSTN1O94985 981 aa10.93□□□□□ -0.66
PDGFRA-206ENST00000508170 ARID4BQ4LE39 1312 aaPredicted RBP10.92□□□□□ -0.66
PDGFRA-206ENST00000508170 CC2D2BQ6DHV5 1058 aa10.91□□□□□ -0.66
PDGFRA-206ENST00000508170 CCDC125Q86Z20 511 aa10.9□□□□□ -0.66
PDGFRA-206ENST00000508170 TMED8Q6PL24 325 aaPredicted RBP10.89□□□□□ -0.67
PDGFRA-206ENST00000508170 FBXW7Q969H0 707 aa10.87□□□□□ -0.67
PDGFRA-206ENST00000508170 ZNF326Q5BKZ1 582 aaKnown RBP10.86□□□□□ -0.67
PDGFRA-206ENST00000508170 ZNF316A6NFI3 1004 aaPredicted RBP10.85□□□□□ -0.67
PDGFRA-206ENST00000508170 IRF5Q13568 498 aa10.85□□□□□ -0.67
PDGFRA-206ENST00000508170 TRAK2O60296 914 aa10.84□□□□□ -0.67
PDGFRA-206ENST00000508170 ZMYND10O75800 440 aa10.84□□□□□ -0.67
PDGFRA-206ENST00000508170 RETREG2Q8NC44 543 aa10.84□□□□□ -0.67
PDGFRA-206ENST00000508170 CCDC136Q96JN2 1154 aa10.82□□□□□ -0.68
PDGFRA-206ENST00000508170 CLUAP1Q96AJ1 413 aa10.82□□□□□ -0.68
PDGFRA-206ENST00000508170 BARGINQ6ZT62 677 aa10.81□□□□□ -0.68
PDGFRA-206ENST00000508170 CCDC27Q2M243 656 aa10.8□□□□□ -0.68
PDGFRA-206ENST00000508170 FLIIQ13045 1269 aa10.8□□□□□ -0.68
PDGFRA-206ENST00000508170 KDM4CQ9H3R0 1056 aa10.8□□□□□ -0.68
PDGFRA-206ENST00000508170 PRDM16Q9HAZ2 1276 aa10.8□□□□□ -0.68
PDGFRA-206ENST00000508170 A0A0U1RQG5 324 aaPredicted RBP10.78□□□□□ -0.68
PDGFRA-206ENST00000508170 ZNF526Q8TF50 670 aaPredicted RBP10.78□□□□□ -0.68
PDGFRA-206ENST00000508170 A6NJR5 290 aa10.77□□□□□ -0.69
PDGFRA-206ENST00000508170 KDM4AO75164 1064 aa10.76□□□□□ -0.69
PDGFRA-206ENST00000508170 AMOTL2Q9Y2J4 779 aa10.74□□□□□ -0.69
PDGFRA-206ENST00000508170 ONECUT3O60422 494 aaPredicted RBP10.73□□□□□ -0.69
PDGFRA-206ENST00000508170 CADPSQ9ULU8 1353 aa10.72□□□□□ -0.69
PDGFRA-206ENST00000508170 CIZ1Q9ULV3 898 aaPredicted RBP10.71□□□□□ -0.69
PDGFRA-206ENST00000508170 RNF25Q96BH1 459 aaPredicted RBP10.69□□□□□ -0.7
PDGFRA-206ENST00000508170 NAP1L5Q96NT1 182 aaPredicted RBP10.69□□□□□ -0.7
PDGFRA-206ENST00000508170 ZNF777Q9ULD5 760 aaPredicted RBP10.69□□□□□ -0.7
PDGFRA-206ENST00000508170 SMARCA5O60264 1052 aaPredicted RBP10.68□□□□□ -0.7
PDGFRA-206ENST00000508170 ZEB1P37275 1124 aaPredicted RBP10.68□□□□□ -0.7
PDGFRA-206ENST00000508170 CANXP27824 592 aaKnown RBP10.68□□□□□ -0.7
PDGFRA-206ENST00000508170 CCDC97Q96F63 343 aaPredicted RBP10.67□□□□□ -0.7
PDGFRA-206ENST00000508170 IGSF5Q9NSI5 407 aa10.67□□□□□ -0.7
PDGFRA-206ENST00000508170 MKRN4PQ13434 485 aaPredicted RBP10.66□□□□□ -0.7
PDGFRA-206ENST00000508170 AK7Q96M32 723 aa10.66□□□□□ -0.7
PDGFRA-206ENST00000508170 SERPINA10Q9UK55 444 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms