RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 PRKCSHP14314 528 aaPredicted RBP9.27□□□□□ -0.93
USP53-204ENST00000507906 CFAP44Q96MT7 982 aa9.26□□□□□ -0.93
USP53-204ENST00000507906 CIZ1Q9ULV3 898 aaPredicted RBP9.26□□□□□ -0.93
USP53-204ENST00000507906 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.25□□□□□ -0.93
USP53-204ENST00000507906 TSHZ2Q9NRE2 1034 aa9.23□□□□□ -0.93
USP53-204ENST00000507906 GABBR2O75899 941 aa9.21□□□□□ -0.94
USP53-204ENST00000507906 CD44P16070 742 aaKnown RBP9.21□□□□□ -0.94
USP53-204ENST00000507906 FARP1Q9Y4F1 1045 aaPredicted RBP9.21□□□□□ -0.94
USP53-204ENST00000507906 CHGAP10645 457 aaKnown RBP9.2□□□□□ -0.94
USP53-204ENST00000507906 BCANQ96GW7 911 aa9.2□□□□□ -0.94
USP53-204ENST00000507906 RNF25Q96BH1 459 aaPredicted RBP9.19□□□□□ -0.94
USP53-204ENST00000507906 NUBP1P53384 320 aa9.17□□□□□ -0.94
USP53-204ENST00000507906 SPRYD3Q8NCJ5 442 aa9.17□□□□□ -0.94
USP53-204ENST00000507906 TAOK2Q9UL54 1235 aa9.16□□□□□ -0.94
USP53-204ENST00000507906 ZBTB47Q9UFB7 747 aaPredicted RBP9.15□□□□□ -0.94
USP53-204ENST00000507906 CREBZFQ9NS37 354 aa9.14□□□□□ -0.95
USP53-204ENST00000507906 PLEKHG5O94827 1062 aa9.12□□□□□ -0.95
USP53-204ENST00000507906 MNX1P50219 401 aaPredicted RBP9.1□□□□□ -0.95
USP53-204ENST00000507906 HS6ST3Q8IZP7 471 aa9.1□□□□□ -0.95
USP53-204ENST00000507906 NKX1-1Q15270 411 aaPredicted RBP9.09□□□□□ -0.95
USP53-204ENST00000507906 ZRANB1Q9UGI0 708 aa9.08□□□□□ -0.96
USP53-204ENST00000507906 TRIM41Q8WV44 630 aa9.07□□□□□ -0.96
USP53-204ENST00000507906 GSE1Q14687 1217 aa9.05□□□□□ -0.96
USP53-204ENST00000507906 DCAF8Q5TAQ9 597 aa9.05□□□□□ -0.96
USP53-204ENST00000507906 POTEIP0CG38 1075 aa9.04□□□□□ -0.96
USP53-204ENST00000507906 TPRNQ4KMQ1 711 aa9.04□□□□□ -0.96
USP53-204ENST00000507906 DNAJC5Q9H3Z4 198 aa9.04□□□□□ -0.96
USP53-204ENST00000507906 RASEFQ8IZ41 740 aa9.03□□□□□ -0.96
USP53-204ENST00000507906 RIOK3O14730 519 aaKnown RBP9.01□□□□□ -0.97
USP53-204ENST00000507906 PHF12Q96QT6 1004 aa9.01□□□□□ -0.97
USP53-204ENST00000507906 GTPBP6O43824 516 aaPredicted RBP9□□□□□ -0.97
USP53-204ENST00000507906 LHX8Q68G74 356 aa8.99□□□□□ -0.97
USP53-204ENST00000507906 GALR2O43603 387 aaPredicted RBP8.98□□□□□ -0.97
USP53-204ENST00000507906 ZNF579Q8NAF0 562 aaKnown RBP8.98□□□□□ -0.97
USP53-204ENST00000507906 DCBLD2Q96PD2 775 aa8.97□□□□□ -0.97
USP53-204ENST00000507906 CHRM1P11229 460 aaPredicted RBP8.96□□□□□ -0.98
USP53-204ENST00000507906 PAK3O75914 559 aaPredicted RBP8.94□□□□□ -0.98
USP53-204ENST00000507906 FAM212AQ96EL1 285 aa8.94□□□□□ -0.98
USP53-204ENST00000507906 STK25O00506 426 aa8.93□□□□□ -0.98
USP53-204ENST00000507906 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.91□□□□□ -0.98
USP53-204ENST00000507906 VGFO15240 615 aaPredicted RBP8.91□□□□□ -0.98
USP53-204ENST00000507906 PYGBP11216 843 aa8.91□□□□□ -0.98
USP53-204ENST00000507906 ZFP91Q96JP5 570 aaPredicted RBP8.91□□□□□ -0.98
USP53-204ENST00000507906 TSPYL2Q9H2G4 693 aaPredicted RBP8.9□□□□□ -0.98
USP53-204ENST00000507906 BCL11BQ9C0K0 894 aaPredicted RBP8.89□□□□□ -0.99
USP53-204ENST00000507906 SGIP1Q9BQI5 828 aa8.88□□□□□ -0.99
USP53-204ENST00000507906 STK24Q9Y6E0 443 aa8.87□□□□□ -0.99
USP53-204ENST00000507906 MS4A3Q96HJ5 214 aa8.84□□□□□ -0.99
USP53-204ENST00000507906 CLCN6P51797 869 aa8.83□□□□□ -1
USP53-204ENST00000507906 NBR1Q14596 966 aa8.82□□□□□ -1
USP53-204ENST00000507906 PELP1Q8IZL8 1130 aaKnown RBP8.81□□□□□ -1
USP53-204ENST00000507906 CADPS2Q86UW7 1296 aa8.79□□□□□ -1
USP53-204ENST00000507906 POTEB2H3BUK9 544 aa8.77□□□□□ -1.01
USP53-204ENST00000507906 PCDHB8Q9UN66 801 aa8.77□□□□□ -1.01
USP53-204ENST00000507906 PCDHB13Q9Y5F0 798 aa8.77□□□□□ -1.01
USP53-204ENST00000507906 CCDC61Q9Y6R9 512 aa8.75□□□□□ -1.01
USP53-204ENST00000507906 TRPC6Q9Y210 931 aa8.74□□□□□ -1.01
USP53-204ENST00000507906 ATMINO43313 823 aaPredicted RBP8.71□□□□□ -1.02
USP53-204ENST00000507906 METRNQ9UJH8 293 aa8.71□□□□□ -1.02
USP53-204ENST00000507906 MAP3K13O43283 966 aa8.7□□□□□ -1.02
USP53-204ENST00000507906 KIF12Q96FN5 646 aa8.7□□□□□ -1.02
USP53-204ENST00000507906 OTUD5Q96G74 571 aa8.7□□□□□ -1.02
USP53-204ENST00000507906 ATN1P54259 1190 aaPredicted RBP8.69□□□□□ -1.02
USP53-204ENST00000507906 PDAP1Q13442 181 aaKnown RBP8.69□□□□□ -1.02
USP53-204ENST00000507906 ASTLQ6HA08 431 aaPredicted RBP8.69□□□□□ -1.02
USP53-204ENST00000507906 MFRPQ9BY79 579 aa8.69□□□□□ -1.02
USP53-204ENST00000507906 ZNF467Q7Z7K2 595 aaPredicted RBP8.68□□□□□ -1.02
USP53-204ENST00000507906 RYDENQ9NUL5 291 aaKnown RBP8.68□□□□□ -1.02
USP53-204ENST00000507906 PPP1R37O75864 691 aa8.67□□□□□ -1.02
USP53-204ENST00000507906 PSEN1P49768 467 aa8.67□□□□□ -1.02
USP53-204ENST00000507906 KCNV2Q8TDN2 545 aa8.66□□□□□ -1.02
USP53-204ENST00000507906 BMP2KQ9NSY1 1161 aaPredicted RBP8.66□□□□□ -1.02
USP53-204ENST00000507906 POTEJP0CG39 1038 aa8.64□□□□□ -1.03
USP53-204ENST00000507906 IFNL1Q8IU54 200 aa8.64□□□□□ -1.03
USP53-204ENST00000507906 SLC39A7Q92504 469 aa8.63□□□□□ -1.03
USP53-204ENST00000507906 FBXO22Q8NEZ5 403 aa8.61□□□□□ -1.03
USP53-204ENST00000507906 C7P10643 843 aa8.6□□□□□ -1.03
USP53-204ENST00000507906 EFCAB3Q8N7B9 438 aa8.6□□□□□ -1.03
USP53-204ENST00000507906 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP53-204ENST00000507906 PHF8Q9UPP1 1060 aa8.58□□□□□ -1.04
USP53-204ENST00000507906 POTEFA5A3E0 1075 aa8.57□□□□□ -1.04
USP53-204ENST00000507906 TTLL13PA6NNM8 815 aa8.57□□□□□ -1.04
USP53-204ENST00000507906 CABP2Q9NPB3 220 aa8.57□□□□□ -1.04
USP53-204ENST00000507906 P3H3Q8IVL6 736 aa8.56□□□□□ -1.04
USP53-204ENST00000507906 PLSCR2Q9NRY7 297 aa8.56□□□□□ -1.04
USP53-204ENST00000507906 WDR70Q9NW82 654 aa8.56□□□□□ -1.04
USP53-204ENST00000507906 COLQQ9Y215 455 aaPredicted RBP8.55□□□□□ -1.04
USP53-204ENST00000507906 TIE1P35590 1138 aa8.54□□□□□ -1.04
USP53-204ENST00000507906 TRIM35Q9UPQ4 493 aa8.54□□□□□ -1.04
USP53-204ENST00000507906 LMOD2Q6P5Q4 547 aa8.53□□□□□ -1.04
USP53-204ENST00000507906 SEC24BO95487 1268 aa8.52□□□□□ -1.05
USP53-204ENST00000507906 MS4A4AQ96JQ5 239 aa8.52□□□□□ -1.05
USP53-204ENST00000507906 NCKAP5LQ9HCH0 1330 aa8.52□□□□□ -1.05
USP53-204ENST00000507906 NLRP6P59044 892 aa8.51□□□□□ -1.05
USP53-204ENST00000507906 TMEM106CQ9BVX2 250 aa8.51□□□□□ -1.05
USP53-204ENST00000507906 SOX12O15370 315 aa8.5□□□□□ -1.05
USP53-204ENST00000507906 POTEMA6NI47 508 aa8.49□□□□□ -1.05
USP53-204ENST00000507906 SCUBE2Q9NQ36 999 aa8.49□□□□□ -1.05
USP53-204ENST00000507906 SEMA3EO15041 775 aa8.48□□□□□ -1.05
USP53-204ENST00000507906 POTEGQ6S5H5 508 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms