RNA–Protein interactions for RNA: ENST00000502802.1

HMGB1P3-201, Transcript of high mobility group box 1 pseudogene 3, humanhuman

BASIC

Gene HMGB1P3, Length 616 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P3-201ENST00000502802 DCAF8Q5TAQ9 597 aa11.67□□□□□ -0.54
HMGB1P3-201ENST00000502802 AKT1S1Q96B36 256 aa11.66□□□□□ -0.54
HMGB1P3-201ENST00000502802 DNAJC5Q9H3Z4 198 aa11.66□□□□□ -0.54
HMGB1P3-201ENST00000502802 RBM42Q9BTD8 480 aaKnown RBP11.65□□□□□ -0.54
HMGB1P3-201ENST00000502802 RIOK3O14730 519 aaKnown RBP11.62□□□□□ -0.55
HMGB1P3-201ENST00000502802 CLEC11AQ9Y240 323 aa11.62□□□□□ -0.55
HMGB1P3-201ENST00000502802 PRR29P0C7W0 189 aa11.61□□□□□ -0.55
HMGB1P3-201ENST00000502802 TPRNQ4KMQ1 711 aa11.61□□□□□ -0.55
HMGB1P3-201ENST00000502802 CREBZFQ9NS37 354 aa11.61□□□□□ -0.55
HMGB1P3-201ENST00000502802 FAM212AQ96EL1 285 aa11.6□□□□□ -0.55
HMGB1P3-201ENST00000502802 MNX1P50219 401 aaPredicted RBP11.57□□□□□ -0.56
HMGB1P3-201ENST00000502802 VGFO15240 615 aaPredicted RBP11.54□□□□□ -0.56
HMGB1P3-201ENST00000502802 CHRM1P11229 460 aaPredicted RBP11.54□□□□□ -0.56
HMGB1P3-201ENST00000502802 NKX1-1Q15270 411 aaPredicted RBP11.54□□□□□ -0.56
HMGB1P3-201ENST00000502802 REM2Q8IYK8 340 aaPredicted RBP11.54□□□□□ -0.56
HMGB1P3-201ENST00000502802 STK25O00506 426 aa11.51□□□□□ -0.57
HMGB1P3-201ENST00000502802 GTPBP6O43824 516 aaPredicted RBP11.51□□□□□ -0.57
HMGB1P3-201ENST00000502802 RASEFQ8IZ41 740 aa11.5□□□□□ -0.57
HMGB1P3-201ENST00000502802 NBR1Q14596 966 aa11.49□□□□□ -0.57
HMGB1P3-201ENST00000502802 SGIP1Q9BQI5 828 aa11.48□□□□□ -0.57
HMGB1P3-201ENST00000502802 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.42□□□□□ -0.58
HMGB1P3-201ENST00000502802 PYGBP11216 843 aa11.42□□□□□ -0.58
HMGB1P3-201ENST00000502802 ZFP91Q96JP5 570 aaPredicted RBP11.42□□□□□ -0.58
HMGB1P3-201ENST00000502802 STK24Q9Y6E0 443 aa11.42□□□□□ -0.58
HMGB1P3-201ENST00000502802 BCL11BQ9C0K0 894 aaPredicted RBP11.41□□□□□ -0.58
HMGB1P3-201ENST00000502802 RYDENQ9NUL5 291 aaKnown RBP11.41□□□□□ -0.58
HMGB1P3-201ENST00000502802 PITPNM1O00562 1244 aa11.39□□□□□ -0.59
HMGB1P3-201ENST00000502802 ZNF467Q7Z7K2 595 aaPredicted RBP11.28□□□□□ -0.6
HMGB1P3-201ENST00000502802 TSPYL2Q9H2G4 693 aaPredicted RBP11.27□□□□□ -0.61
HMGB1P3-201ENST00000502802 CHADLQ6NUI6 762 aa11.25□□□□□ -0.61
HMGB1P3-201ENST00000502802 PDAP1Q13442 181 aaKnown RBP11.22□□□□□ -0.61
HMGB1P3-201ENST00000502802 FARP1Q9Y4F1 1045 aaPredicted RBP11.22□□□□□ -0.61
HMGB1P3-201ENST00000502802 P3H3Q8IVL6 736 aa11.2□□□□□ -0.62
HMGB1P3-201ENST00000502802 WDR70Q9NW82 654 aa11.17□□□□□ -0.62
HMGB1P3-201ENST00000502802 PCDHB8Q9UN66 801 aa11.17□□□□□ -0.62
HMGB1P3-201ENST00000502802 PCDHB13Q9Y5F0 798 aa11.17□□□□□ -0.62
HMGB1P3-201ENST00000502802 CCDC61Q9Y6R9 512 aa11.16□□□□□ -0.62
HMGB1P3-201ENST00000502802 ZNF579Q8NAF0 562 aaKnown RBP11.15□□□□□ -0.62
HMGB1P3-201ENST00000502802 PSEN1P49768 467 aa11.14□□□□□ -0.63
HMGB1P3-201ENST00000502802 CADPS2Q86UW7 1296 aa11.14□□□□□ -0.63
HMGB1P3-201ENST00000502802 PRKAR2AP13861 404 aaKnown RBP11.12□□□□□ -0.63
HMGB1P3-201ENST00000502802 MFRPQ9BY79 579 aa11.11□□□□□ -0.63
HMGB1P3-201ENST00000502802 KCNV2Q8TDN2 545 aa11.09□□□□□ -0.63
HMGB1P3-201ENST00000502802 PAK3O75914 559 aaPredicted RBP11.07□□□□□ -0.64
HMGB1P3-201ENST00000502802 FXR2P51116 673 aaKnown RBP eCLIP11.06□□□□□ -0.64
HMGB1P3-201ENST00000502802 IFNL1Q8IU54 200 aa11.03□□□□□ -0.64
HMGB1P3-201ENST00000502802 SOX12O15370 315 aa11.02□□□□□ -0.65
HMGB1P3-201ENST00000502802 NLRP6P59044 892 aa11.02□□□□□ -0.65
HMGB1P3-201ENST00000502802 MAP3K13O43283 966 aa11.01□□□□□ -0.65
HMGB1P3-201ENST00000502802 EFCAB3Q8N7B9 438 aa11.01□□□□□ -0.65
HMGB1P3-201ENST00000502802 PPP1R37O75864 691 aa11□□□□□ -0.65
HMGB1P3-201ENST00000502802 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11□□□□□ -0.65
HMGB1P3-201ENST00000502802 FBXO22Q8NEZ5 403 aa11□□□□□ -0.65
HMGB1P3-201ENST00000502802 KIF12Q96FN5 646 aa11□□□□□ -0.65
HMGB1P3-201ENST00000502802 LMOD2Q6P5Q4 547 aa10.99□□□□□ -0.65
HMGB1P3-201ENST00000502802 CABP2Q9NPB3 220 aa10.99□□□□□ -0.65
HMGB1P3-201ENST00000502802 ARHGEF1Q92888 912 aaKnown RBP10.97□□□□□ -0.65
HMGB1P3-201ENST00000502802 PHF8Q9UPP1 1060 aa10.97□□□□□ -0.65
HMGB1P3-201ENST00000502802 TULP1O00294 542 aaPredicted RBP10.95□□□□□ -0.66
HMGB1P3-201ENST00000502802 E2F4Q16254 413 aa10.95□□□□□ -0.66
HMGB1P3-201ENST00000502802 GTF3C3Q9Y5Q9 886 aa10.93□□□□□ -0.66
HMGB1P3-201ENST00000502802 TMEM132AQ24JP5 1023 aa10.92□□□□□ -0.66
HMGB1P3-201ENST00000502802 PIP4P2Q8N4L2 257 aa10.9□□□□□ -0.66
HMGB1P3-201ENST00000502802 CHRDL2Q6WN34 429 aa10.89□□□□□ -0.67
HMGB1P3-201ENST00000502802 ZRANB1Q9UGI0 708 aa10.89□□□□□ -0.67
HMGB1P3-201ENST00000502802 PDE4AP27815 886 aa10.86□□□□□ -0.67
HMGB1P3-201ENST00000502802 NCKAP5LQ9HCH0 1330 aa10.85□□□□□ -0.67
HMGB1P3-201ENST00000502802 TESPA1A2RU30 521 aaPredicted RBP10.84□□□□□ -0.67
HMGB1P3-201ENST00000502802 SEMA3EO15041 775 aa10.84□□□□□ -0.67
HMGB1P3-201ENST00000502802 CD44P16070 742 aaKnown RBP10.84□□□□□ -0.67
HMGB1P3-201ENST00000502802 MS4A4AQ96JQ5 239 aa10.84□□□□□ -0.67
HMGB1P3-201ENST00000502802 LARP6Q9BRS8 491 aaKnown RBP10.84□□□□□ -0.67
HMGB1P3-201ENST00000502802 TIMELESSQ9UNS1 1208 aa10.84□□□□□ -0.67
HMGB1P3-201ENST00000502802 GOLGA2Q08379 1002 aa10.83□□□□□ -0.68
HMGB1P3-201ENST00000502802 MFSD10Q14728 455 aa10.82□□□□□ -0.68
HMGB1P3-201ENST00000502802 ZC3H15Q8WU90 426 aaKnown RBP10.82□□□□□ -0.68
HMGB1P3-201ENST00000502802 PHF12Q96QT6 1004 aa10.82□□□□□ -0.68
HMGB1P3-201ENST00000502802 ERICH6Q7L0X2 663 aa10.8□□□□□ -0.68
HMGB1P3-201ENST00000502802 TMEM106CQ9BVX2 250 aa10.79□□□□□ -0.68
HMGB1P3-201ENST00000502802 CRISPLD2Q9H0B8 497 aa10.79□□□□□ -0.68
HMGB1P3-201ENST00000502802 SMYD5Q6GMV2 418 aa10.78□□□□□ -0.68
HMGB1P3-201ENST00000502802 DDX27Q96GQ7 796 aaKnown RBP10.78□□□□□ -0.68
HMGB1P3-201ENST00000502802 ARIH1Q9Y4X5 557 aaPredicted RBP10.77□□□□□ -0.69
HMGB1P3-201ENST00000502802 MKRN3Q13064 507 aaKnown RBP10.76□□□□□ -0.69
HMGB1P3-201ENST00000502802 BRPF1P55201 1214 aaPredicted RBP10.75□□□□□ -0.69
HMGB1P3-201ENST00000502802 CAMK2BQ13554 666 aa10.73□□□□□ -0.69
HMGB1P3-201ENST00000502802 SLC24A3Q9HC58 644 aa10.73□□□□□ -0.69
HMGB1P3-201ENST00000502802 MS4A3Q96HJ5 214 aa10.72□□□□□ -0.69
HMGB1P3-201ENST00000502802 TRPC6Q9Y210 931 aa10.72□□□□□ -0.69
HMGB1P3-201ENST00000502802 ZMYND10O75800 440 aa10.69□□□□□ -0.7
HMGB1P3-201ENST00000502802 NEUROD2Q15784 382 aa10.69□□□□□ -0.7
HMGB1P3-201ENST00000502802 TIE1P35590 1138 aa10.67□□□□□ -0.7
HMGB1P3-201ENST00000502802 ILDR1Q86SU0 546 aaPredicted RBP10.66□□□□□ -0.7
HMGB1P3-201ENST00000502802 C19orf67A6NJJ6 358 aa10.65□□□□□ -0.7
HMGB1P3-201ENST00000502802 GPHNQ9NQX3 736 aaPredicted RBP10.65□□□□□ -0.7
HMGB1P3-201ENST00000502802 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.65□□□□□ -0.7
HMGB1P3-201ENST00000502802 TTLL13PA6NNM8 815 aa10.64□□□□□ -0.71
HMGB1P3-201ENST00000502802 PPP1R15BQ5SWA1 713 aa10.64□□□□□ -0.71
HMGB1P3-201ENST00000502802 BARGINQ6ZT62 677 aa10.63□□□□□ -0.71
HMGB1P3-201ENST00000502802 C14orf37Q86TY3 774 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms