RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 CCDC61Q9Y6R9 512 aa15.55■□□□□ 0.08
CCDC39-207ENST00000495817 TRIM41Q8WV44 630 aa15.54■□□□□ 0.08
CCDC39-207ENST00000495817 CIZ1Q9ULV3 898 aaPredicted RBP15.54■□□□□ 0.08
CCDC39-207ENST00000495817 CLCN6P51797 869 aa15.51■□□□□ 0.07
CCDC39-207ENST00000495817 EVX2Q03828 476 aa15.5■□□□□ 0.07
CCDC39-207ENST00000495817 AMER1Q5JTC6 1135 aaPredicted RBP15.49■□□□□ 0.07
CCDC39-207ENST00000495817 CHRM1P11229 460 aaPredicted RBP15.44■□□□□ 0.06
CCDC39-207ENST00000495817 SP7Q8TDD2 431 aaPredicted RBP15.42■□□□□ 0.06
CCDC39-207ENST00000495817 PHF12Q96QT6 1004 aa15.42■□□□□ 0.06
CCDC39-207ENST00000495817 PKD2Q13563 968 aa15.4■□□□□ 0.06
CCDC39-207ENST00000495817 KIF12Q96FN5 646 aa15.39■□□□□ 0.05
CCDC39-207ENST00000495817 SGIP1Q9BQI5 828 aa15.39■□□□□ 0.05
CCDC39-207ENST00000495817 PYGBP11216 843 aa15.38■□□□□ 0.05
CCDC39-207ENST00000495817 ECM2O94769 699 aaPredicted RBP15.34■□□□□ 0.05
CCDC39-207ENST00000495817 MAP3K13O43283 966 aa15.32■□□□□ 0.04
CCDC39-207ENST00000495817 ZNF467Q7Z7K2 595 aaPredicted RBP15.3■□□□□ 0.04
CCDC39-207ENST00000495817 RTN4Q9NQC3 1192 aaKnown RBP15.3■□□□□ 0.04
CCDC39-207ENST00000495817 PCDHB13Q9Y5F0 798 aa15.3■□□□□ 0.04
CCDC39-207ENST00000495817 GABBR2O75899 941 aa15.28■□□□□ 0.04
CCDC39-207ENST00000495817 MS4A3Q96HJ5 214 aa15.26■□□□□ 0.03
CCDC39-207ENST00000495817 GALR2O43603 387 aaPredicted RBP15.22■□□□□ 0.03
CCDC39-207ENST00000495817 IFNL1Q8IU54 200 aa15.22■□□□□ 0.03
CCDC39-207ENST00000495817 RIOK3O14730 519 aaKnown RBP15.21■□□□□ 0.03
CCDC39-207ENST00000495817 TAOK2Q9UL54 1235 aa15.2■□□□□ 0.02
CCDC39-207ENST00000495817 RNF25Q96BH1 459 aaPredicted RBP15.18■□□□□ 0.02
CCDC39-207ENST00000495817 PCDHB8Q9UN66 801 aa15.16■□□□□ 0.02
CCDC39-207ENST00000495817 RGL2O15211 777 aa15.15■□□□□ 0.02
CCDC39-207ENST00000495817 TIE1P35590 1138 aa15.13■□□□□ 0.01
CCDC39-207ENST00000495817 PDAP1Q13442 181 aaKnown RBP15.13■□□□□ 0.01
CCDC39-207ENST00000495817 VGFO15240 615 aaPredicted RBP15.12■□□□□ 0.01
CCDC39-207ENST00000495817 DCBLD2Q96PD2 775 aa15.09■□□□□ 0.01
CCDC39-207ENST00000495817 PSEN1P49768 467 aa15.07■□□□□ 0
CCDC39-207ENST00000495817 TRPC6Q9Y210 931 aa15.05■□□□□ -0
CCDC39-207ENST00000495817 ASTLQ6HA08 431 aaPredicted RBP15.04■□□□□ -0
CCDC39-207ENST00000495817 BMP2KQ9NSY1 1161 aaPredicted RBP15.04■□□□□ -0
CCDC39-207ENST00000495817 TMEM106CQ9BVX2 250 aa15.02■□□□□ -0
CCDC39-207ENST00000495817 TTLL13PA6NNM8 815 aa15.01□□□□□ -0.01
CCDC39-207ENST00000495817 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.99□□□□□ -0.01
CCDC39-207ENST00000495817 ATMINO43313 823 aaPredicted RBP14.99□□□□□ -0.01
CCDC39-207ENST00000495817 ZFP91Q96JP5 570 aaPredicted RBP14.99□□□□□ -0.01
CCDC39-207ENST00000495817 DCAF8L2P0C7V8 631 aa14.94□□□□□ -0.02
CCDC39-207ENST00000495817 STK25O00506 426 aa14.93□□□□□ -0.02
CCDC39-207ENST00000495817 POTEIP0CG38 1075 aa14.92□□□□□ -0.02
CCDC39-207ENST00000495817 ATN1P54259 1190 aaPredicted RBP14.92□□□□□ -0.02
CCDC39-207ENST00000495817 HS6ST3Q8IZP7 471 aa14.92□□□□□ -0.02
CCDC39-207ENST00000495817 BCL11BQ9C0K0 894 aaPredicted RBP14.92□□□□□ -0.02
CCDC39-207ENST00000495817 TRIM35Q9UPQ4 493 aa14.91□□□□□ -0.02
CCDC39-207ENST00000495817 GOLGA2Q08379 1002 aa14.89□□□□□ -0.03
CCDC39-207ENST00000495817 IER5LQ5T953 404 aa14.88□□□□□ -0.03
CCDC39-207ENST00000495817 STK24Q9Y6E0 443 aa14.88□□□□□ -0.03
CCDC39-207ENST00000495817 CHGAP10645 457 aaKnown RBP14.87□□□□□ -0.03
CCDC39-207ENST00000495817 CABP2Q9NPB3 220 aa14.86□□□□□ -0.03
CCDC39-207ENST00000495817 SLC39A7Q92504 469 aa14.85□□□□□ -0.03
CCDC39-207ENST00000495817 MKRN3Q13064 507 aaKnown RBP14.83□□□□□ -0.04
CCDC39-207ENST00000495817 DNAJC5Q9H3Z4 198 aa14.83□□□□□ -0.04
CCDC39-207ENST00000495817 C7P10643 843 aa14.82□□□□□ -0.04
CCDC39-207ENST00000495817 PELP1Q8IZL8 1130 aaKnown RBP14.82□□□□□ -0.04
CCDC39-207ENST00000495817 METRNQ9UJH8 293 aa14.77□□□□□ -0.05
CCDC39-207ENST00000495817 SOX12O15370 315 aa14.76□□□□□ -0.05
CCDC39-207ENST00000495817 EFCAB3Q8N7B9 438 aa14.76□□□□□ -0.05
CCDC39-207ENST00000495817 IRX5P78411 483 aaPredicted RBP14.72□□□□□ -0.05
CCDC39-207ENST00000495817 ILDR1Q86SU0 546 aaPredicted RBP14.71□□□□□ -0.05
CCDC39-207ENST00000495817 SLC24A1O60721 1099 aa14.7□□□□□ -0.06
CCDC39-207ENST00000495817 SEC24BO95487 1268 aa14.7□□□□□ -0.06
CCDC39-207ENST00000495817 PLCG2P16885 1265 aa14.69□□□□□ -0.06
CCDC39-207ENST00000495817 OCEL1Q9H607 264 aa14.69□□□□□ -0.06
CCDC39-207ENST00000495817 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.69□□□□□ -0.06
CCDC39-207ENST00000495817 BBXQ8WY36 941 aaPredicted RBP14.68□□□□□ -0.06
CCDC39-207ENST00000495817 RYDENQ9NUL5 291 aaKnown RBP14.68□□□□□ -0.06
CCDC39-207ENST00000495817 NLRP6P59044 892 aa14.67□□□□□ -0.06
CCDC39-207ENST00000495817 MFRPQ9BY79 579 aa14.64□□□□□ -0.07
CCDC39-207ENST00000495817 NKX1-1Q15270 411 aaPredicted RBP14.63□□□□□ -0.07
CCDC39-207ENST00000495817 PDCD7Q8N8D1 485 aaKnown RBP14.63□□□□□ -0.07
CCDC39-207ENST00000495817 PHF8Q9UPP1 1060 aa14.63□□□□□ -0.07
CCDC39-207ENST00000495817 FBXO22Q8NEZ5 403 aa14.62□□□□□ -0.07
CCDC39-207ENST00000495817 COLQQ9Y215 455 aaPredicted RBP14.62□□□□□ -0.07
CCDC39-207ENST00000495817 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.61□□□□□ -0.07
CCDC39-207ENST00000495817 POTEFA5A3E0 1075 aa14.6□□□□□ -0.07
CCDC39-207ENST00000495817 MS4A4AQ96JQ5 239 aa14.55□□□□□ -0.08
CCDC39-207ENST00000495817 L3MBTL3Q96JM7 780 aaPredicted RBP14.53□□□□□ -0.08
CCDC39-207ENST00000495817 GTPBP6O43824 516 aaPredicted RBP14.5□□□□□ -0.09
CCDC39-207ENST00000495817 G3V3G9 751 aa14.48□□□□□ -0.09
CCDC39-207ENST00000495817 SPRYD3Q8NCJ5 442 aa14.47□□□□□ -0.09
CCDC39-207ENST00000495817 DPY19L2Q6NUT2 758 aa14.46□□□□□ -0.09
CCDC39-207ENST00000495817 BOLA1Q9Y3E2 137 aa14.46□□□□□ -0.09
CCDC39-207ENST00000495817 MAMSTRQ6ZN01 415 aa14.45□□□□□ -0.1
CCDC39-207ENST00000495817 POTEB2H3BUK9 544 aa14.44□□□□□ -0.1
CCDC39-207ENST00000495817 LHX8Q68G74 356 aa14.44□□□□□ -0.1
CCDC39-207ENST00000495817 TMEM121BQ9BXQ6 578 aaPredicted RBP14.42□□□□□ -0.1
CCDC39-207ENST00000495817 PAXIP1Q6ZW49 1069 aaPredicted RBP14.4□□□□□ -0.1
CCDC39-207ENST00000495817 MICALL2Q8IY33 904 aa14.4□□□□□ -0.1
CCDC39-207ENST00000495817 SCUBE2Q9NQ36 999 aa14.39□□□□□ -0.11
CCDC39-207ENST00000495817 C3orf67Q6ZVT6 689 aa14.38□□□□□ -0.11
CCDC39-207ENST00000495817 PPP1R37O75864 691 aa14.37□□□□□ -0.11
CCDC39-207ENST00000495817 POTEJP0CG39 1038 aa14.37□□□□□ -0.11
CCDC39-207ENST00000495817 CFAP44Q96MT7 982 aa14.36□□□□□ -0.11
CCDC39-207ENST00000495817 PLCB2Q00722 1185 aa14.33□□□□□ -0.12
CCDC39-207ENST00000495817 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.33□□□□□ -0.12
CCDC39-207ENST00000495817 OTUD5Q96G74 571 aa14.26□□□□□ -0.13
CCDC39-207ENST00000495817 SLAIN1Q8ND83 568 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms