RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 DCAF8L2P0C7V8 631 aa14.83□□□□□ -0.04
VIM-207ENST00000495528 HAX1O00165 279 aa14.79□□□□□ -0.04
VIM-207ENST00000495528 PAK3O75914 559 aaPredicted RBP14.79□□□□□ -0.04
VIM-207ENST00000495528 PYGBP11216 843 aa14.78□□□□□ -0.04
VIM-207ENST00000495528 CD44P16070 742 aaKnown RBP14.78□□□□□ -0.04
VIM-207ENST00000495528 RGL2O15211 777 aa14.77□□□□□ -0.05
VIM-207ENST00000495528 TRIM41Q8WV44 630 aa14.77□□□□□ -0.05
VIM-207ENST00000495528 SP7Q8TDD2 431 aaPredicted RBP14.75□□□□□ -0.05
VIM-207ENST00000495528 EVX2Q03828 476 aa14.74□□□□□ -0.05
VIM-207ENST00000495528 ZRANB1Q9UGI0 708 aa14.74□□□□□ -0.05
VIM-207ENST00000495528 CCDC61Q9Y6R9 512 aa14.7□□□□□ -0.06
VIM-207ENST00000495528 C19orf67A6NJJ6 358 aa14.69□□□□□ -0.06
VIM-207ENST00000495528 RNF25Q96BH1 459 aaPredicted RBP14.66□□□□□ -0.06
VIM-207ENST00000495528 CHRM1P11229 460 aaPredicted RBP14.65□□□□□ -0.06
VIM-207ENST00000495528 PHF12Q96QT6 1004 aa14.63□□□□□ -0.07
VIM-207ENST00000495528 RIOK3O14730 519 aaKnown RBP14.6□□□□□ -0.07
VIM-207ENST00000495528 MAP3K13O43283 966 aa14.57□□□□□ -0.08
VIM-207ENST00000495528 KIF12Q96FN5 646 aa14.56□□□□□ -0.08
VIM-207ENST00000495528 PCDHB8Q9UN66 801 aa14.55□□□□□ -0.08
VIM-207ENST00000495528 PCDHB13Q9Y5F0 798 aa14.55□□□□□ -0.08
VIM-207ENST00000495528 ZNF579Q8NAF0 562 aaKnown RBP14.53□□□□□ -0.08
VIM-207ENST00000495528 CHGAP10645 457 aaKnown RBP14.52□□□□□ -0.09
VIM-207ENST00000495528 ZNF467Q7Z7K2 595 aaPredicted RBP14.5□□□□□ -0.09
VIM-207ENST00000495528 VGFO15240 615 aaPredicted RBP14.49□□□□□ -0.09
VIM-207ENST00000495528 IFNL1Q8IU54 200 aa14.49□□□□□ -0.09
VIM-207ENST00000495528 TAOK2Q9UL54 1235 aa14.48□□□□□ -0.09
VIM-207ENST00000495528 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.45□□□□□ -0.1
VIM-207ENST00000495528 ZFP91Q96JP5 570 aaPredicted RBP14.45□□□□□ -0.1
VIM-207ENST00000495528 SGIP1Q9BQI5 828 aa14.44□□□□□ -0.1
VIM-207ENST00000495528 STK25O00506 426 aa14.43□□□□□ -0.1
VIM-207ENST00000495528 MS4A3Q96HJ5 214 aa14.43□□□□□ -0.1
VIM-207ENST00000495528 ABCC9O60706 1549 aa14.42□□□□□ -0.1
VIM-207ENST00000495528 PDAP1Q13442 181 aaKnown RBP14.4□□□□□ -0.1
VIM-207ENST00000495528 PSEN1P49768 467 aa14.39□□□□□ -0.11
VIM-207ENST00000495528 HS6ST3Q8IZP7 471 aa14.39□□□□□ -0.11
VIM-207ENST00000495528 BCL11BQ9C0K0 894 aaPredicted RBP14.39□□□□□ -0.11
VIM-207ENST00000495528 STK24Q9Y6E0 443 aa14.39□□□□□ -0.11
VIM-207ENST00000495528 GALR2O43603 387 aaPredicted RBP14.36□□□□□ -0.11
VIM-207ENST00000495528 TRPC6Q9Y210 931 aa14.36□□□□□ -0.11
VIM-207ENST00000495528 BBXQ8WY36 941 aaPredicted RBP14.35□□□□□ -0.11
VIM-207ENST00000495528 GABBR2O75899 941 aa14.32□□□□□ -0.12
VIM-207ENST00000495528 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.3□□□□□ -0.12
VIM-207ENST00000495528 TMEM106CQ9BVX2 250 aa14.28□□□□□ -0.12
VIM-207ENST00000495528 CLCN6P51797 869 aa14.25□□□□□ -0.13
VIM-207ENST00000495528 CFAP44Q96MT7 982 aa14.25□□□□□ -0.13
VIM-207ENST00000495528 PAXIP1Q6ZW49 1069 aaPredicted RBP14.24□□□□□ -0.13
VIM-207ENST00000495528 CABP2Q9NPB3 220 aa14.24□□□□□ -0.13
VIM-207ENST00000495528 PLCB2Q00722 1185 aa14.22□□□□□ -0.13
VIM-207ENST00000495528 NKX1-1Q15270 411 aaPredicted RBP14.22□□□□□ -0.13
VIM-207ENST00000495528 BMP2KQ9NSY1 1161 aaPredicted RBP14.21□□□□□ -0.13
VIM-207ENST00000495528 TIE1P35590 1138 aa14.2□□□□□ -0.14
VIM-207ENST00000495528 TTLL13PA6NNM8 815 aa14.19□□□□□ -0.14
VIM-207ENST00000495528 DNAJC5Q9H3Z4 198 aa14.18□□□□□ -0.14
VIM-207ENST00000495528 GOLGA2Q08379 1002 aa14.17□□□□□ -0.14
VIM-207ENST00000495528 EFCAB3Q8N7B9 438 aa14.17□□□□□ -0.14
VIM-207ENST00000495528 SPRYD3Q8NCJ5 442 aa14.17□□□□□ -0.14
VIM-207ENST00000495528 CCDC180Q9P1Z9 1646 aa14.15□□□□□ -0.14
VIM-207ENST00000495528 DCBLD2Q96PD2 775 aa14.11□□□□□ -0.15
VIM-207ENST00000495528 TRIM35Q9UPQ4 493 aa14.11□□□□□ -0.15
VIM-207ENST00000495528 ATN1P54259 1190 aaPredicted RBP14.1□□□□□ -0.15
VIM-207ENST00000495528 ATMINO43313 823 aaPredicted RBP14.09□□□□□ -0.15
VIM-207ENST00000495528 GTPBP6O43824 516 aaPredicted RBP14.09□□□□□ -0.15
VIM-207ENST00000495528 SLC24A1O60721 1099 aa14.09□□□□□ -0.15
VIM-207ENST00000495528 HAP1P54257 671 aaPredicted RBP14.09□□□□□ -0.15
VIM-207ENST00000495528 MKRN3Q13064 507 aaKnown RBP14.09□□□□□ -0.15
VIM-207ENST00000495528 POTEIP0CG38 1075 aa14.08□□□□□ -0.16
VIM-207ENST00000495528 MFRPQ9BY79 579 aa14.07□□□□□ -0.16
VIM-207ENST00000495528 PHF8Q9UPP1 1060 aa14.07□□□□□ -0.16
VIM-207ENST00000495528 ASTLQ6HA08 431 aaPredicted RBP14.06□□□□□ -0.16
VIM-207ENST00000495528 SOX12O15370 315 aa14.04□□□□□ -0.16
VIM-207ENST00000495528 NLRP6P59044 892 aa14.01□□□□□ -0.17
VIM-207ENST00000495528 RYDENQ9NUL5 291 aaKnown RBP14.01□□□□□ -0.17
VIM-207ENST00000495528 PELP1Q8IZL8 1130 aaKnown RBP13.99□□□□□ -0.17
VIM-207ENST00000495528 FBXO22Q8NEZ5 403 aa13.98□□□□□ -0.17
VIM-207ENST00000495528 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.98□□□□□ -0.17
VIM-207ENST00000495528 TSHZ2Q9NRE2 1034 aa13.96□□□□□ -0.17
VIM-207ENST00000495528 PPP1R37O75864 691 aa13.93□□□□□ -0.18
VIM-207ENST00000495528 MS4A4AQ96JQ5 239 aa13.93□□□□□ -0.18
VIM-207ENST00000495528 IER5LQ5T953 404 aa13.89□□□□□ -0.19
VIM-207ENST00000495528 IRX5P78411 483 aaPredicted RBP13.88□□□□□ -0.19
VIM-207ENST00000495528 SEC24BO95487 1268 aa13.87□□□□□ -0.19
VIM-207ENST00000495528 DPY19L2Q6NUT2 758 aa13.87□□□□□ -0.19
VIM-207ENST00000495528 SLC39A7Q92504 469 aa13.87□□□□□ -0.19
VIM-207ENST00000495528 PLCG2P16885 1265 aa13.86□□□□□ -0.19
VIM-207ENST00000495528 LHX8Q68G74 356 aa13.86□□□□□ -0.19
VIM-207ENST00000495528 OCEL1Q9H607 264 aa13.86□□□□□ -0.19
VIM-207ENST00000495528 ILDR1Q86SU0 546 aaPredicted RBP13.84□□□□□ -0.19
VIM-207ENST00000495528 PDCD7Q8N8D1 485 aaKnown RBP13.84□□□□□ -0.19
VIM-207ENST00000495528 METRNQ9UJH8 293 aa13.84□□□□□ -0.19
VIM-207ENST00000495528 COLQQ9Y215 455 aaPredicted RBP13.84□□□□□ -0.19
VIM-207ENST00000495528 C7P10643 843 aa13.82□□□□□ -0.2
VIM-207ENST00000495528 POTEFA5A3E0 1075 aa13.77□□□□□ -0.21
VIM-207ENST00000495528 CADPS2Q86UW7 1296 aa13.77□□□□□ -0.21
VIM-207ENST00000495528 VSIG10Q8N0Z9 540 aa13.76□□□□□ -0.21
VIM-207ENST00000495528 KDM2AQ9Y2K7 1162 aa13.76□□□□□ -0.21
VIM-207ENST00000495528 G3V3G9 751 aa13.72□□□□□ -0.21
VIM-207ENST00000495528 BOLA1Q9Y3E2 137 aa13.72□□□□□ -0.21
VIM-207ENST00000495528 MICALL2Q8IY33 904 aa13.7□□□□□ -0.22
VIM-207ENST00000495528 L3MBTL3Q96JM7 780 aaPredicted RBP13.68□□□□□ -0.22
VIM-207ENST00000495528 POTEB2H3BUK9 544 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms