RNA–Protein interactions for RNA: ENST00000493903.1

GTF3A-208, Transcript of general transcription factor IIIA, humanhuman

TSL 3

Gene GTF3A, Length 748 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-208ENST00000493903 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.47□□□□□ -0.89
GTF3A-208ENST00000493903 C19orf67A6NJJ6 358 aa9.46□□□□□ -0.9
GTF3A-208ENST00000493903 SPOCK2Q92563 424 aa9.46□□□□□ -0.9
GTF3A-208ENST00000493903 CD44P16070 742 aaKnown RBP9.45□□□□□ -0.9
GTF3A-208ENST00000493903 RASEFQ8IZ41 740 aa9.45□□□□□ -0.9
GTF3A-208ENST00000493903 PRKCSHP14314 528 aaPredicted RBP9.44□□□□□ -0.9
GTF3A-208ENST00000493903 EVX2Q03828 476 aa9.43□□□□□ -0.9
GTF3A-208ENST00000493903 TSPYL2Q9H2G4 693 aaPredicted RBP9.42□□□□□ -0.9
GTF3A-208ENST00000493903 PAK3O75914 559 aaPredicted RBP9.39□□□□□ -0.91
GTF3A-208ENST00000493903 ZRANB1Q9UGI0 708 aa9.39□□□□□ -0.91
GTF3A-208ENST00000493903 FAM212AQ96EL1 285 aa9.38□□□□□ -0.91
GTF3A-208ENST00000493903 DCAF8Q5TAQ9 597 aa9.37□□□□□ -0.91
GTF3A-208ENST00000493903 KDM2AQ9Y2K7 1162 aa9.37□□□□□ -0.91
GTF3A-208ENST00000493903 ECM2O94769 699 aaPredicted RBP9.36□□□□□ -0.91
GTF3A-208ENST00000493903 PAXIP1Q6ZW49 1069 aaPredicted RBP9.34□□□□□ -0.91
GTF3A-208ENST00000493903 CIZ1Q9ULV3 898 aaPredicted RBP9.34□□□□□ -0.91
GTF3A-208ENST00000493903 CCDC61Q9Y6R9 512 aa9.33□□□□□ -0.92
GTF3A-208ENST00000493903 GSE1Q14687 1217 aa9.32□□□□□ -0.92
GTF3A-208ENST00000493903 TPRNQ4KMQ1 711 aa9.32□□□□□ -0.92
GTF3A-208ENST00000493903 PHF12Q96QT6 1004 aa9.32□□□□□ -0.92
GTF3A-208ENST00000493903 ZNF579Q8NAF0 562 aaKnown RBP9.31□□□□□ -0.92
GTF3A-208ENST00000493903 CFAP44Q96MT7 982 aa9.3□□□□□ -0.92
GTF3A-208ENST00000493903 SPRYD3Q8NCJ5 442 aa9.28□□□□□ -0.92
GTF3A-208ENST00000493903 SP7Q8TDD2 431 aaPredicted RBP9.28□□□□□ -0.92
GTF3A-208ENST00000493903 PYGBP11216 843 aa9.27□□□□□ -0.93
GTF3A-208ENST00000493903 KIF12Q96FN5 646 aa9.24□□□□□ -0.93
GTF3A-208ENST00000493903 RGL2O15211 777 aa9.23□□□□□ -0.93
GTF3A-208ENST00000493903 MAP3K13O43283 966 aa9.22□□□□□ -0.93
GTF3A-208ENST00000493903 GABBR2O75899 941 aa9.21□□□□□ -0.94
GTF3A-208ENST00000493903 MS4A3Q96HJ5 214 aa9.2□□□□□ -0.94
GTF3A-208ENST00000493903 TSHZ2Q9NRE2 1034 aa9.2□□□□□ -0.94
GTF3A-208ENST00000493903 GALR2O43603 387 aaPredicted RBP9.19□□□□□ -0.94
GTF3A-208ENST00000493903 CHRM1P11229 460 aaPredicted RBP9.19□□□□□ -0.94
GTF3A-208ENST00000493903 TRIM41Q8WV44 630 aa9.19□□□□□ -0.94
GTF3A-208ENST00000493903 PCDHB13Q9Y5F0 798 aa9.18□□□□□ -0.94
GTF3A-208ENST00000493903 CLCN6P51797 869 aa9.17□□□□□ -0.94
GTF3A-208ENST00000493903 DNAJC5Q9H3Z4 198 aa9.17□□□□□ -0.94
GTF3A-208ENST00000493903 IFNL1Q8IU54 200 aa9.16□□□□□ -0.94
GTF3A-208ENST00000493903 SGIP1Q9BQI5 828 aa9.15□□□□□ -0.94
GTF3A-208ENST00000493903 PCDHB8Q9UN66 801 aa9.15□□□□□ -0.94
GTF3A-208ENST00000493903 CHGAP10645 457 aaKnown RBP9.14□□□□□ -0.95
GTF3A-208ENST00000493903 RNF25Q96BH1 459 aaPredicted RBP9.14□□□□□ -0.95
GTF3A-208ENST00000493903 NBR1Q14596 966 aa9.13□□□□□ -0.95
GTF3A-208ENST00000493903 TRPC6Q9Y210 931 aa9.13□□□□□ -0.95
GTF3A-208ENST00000493903 ZNF467Q7Z7K2 595 aaPredicted RBP9.11□□□□□ -0.95
GTF3A-208ENST00000493903 HS6ST3Q8IZP7 471 aa9.09□□□□□ -0.95
GTF3A-208ENST00000493903 RIOK3O14730 519 aaKnown RBP9.08□□□□□ -0.96
GTF3A-208ENST00000493903 DCBLD2Q96PD2 775 aa9.06□□□□□ -0.96
GTF3A-208ENST00000493903 BMP2KQ9NSY1 1161 aaPredicted RBP9.05□□□□□ -0.96
GTF3A-208ENST00000493903 POTEIP0CG38 1075 aa9.04□□□□□ -0.96
GTF3A-208ENST00000493903 TIE1P35590 1138 aa9.04□□□□□ -0.96
GTF3A-208ENST00000493903 PSEN1P49768 467 aa9.04□□□□□ -0.96
GTF3A-208ENST00000493903 PDAP1Q13442 181 aaKnown RBP9.04□□□□□ -0.96
GTF3A-208ENST00000493903 TMEM106CQ9BVX2 250 aa9.03□□□□□ -0.96
GTF3A-208ENST00000493903 TTLL13PA6NNM8 815 aa9.02□□□□□ -0.97
GTF3A-208ENST00000493903 VGFO15240 615 aaPredicted RBP9.02□□□□□ -0.97
GTF3A-208ENST00000493903 ATMINO43313 823 aaPredicted RBP9.02□□□□□ -0.97
GTF3A-208ENST00000493903 ASTLQ6HA08 431 aaPredicted RBP9.01□□□□□ -0.97
GTF3A-208ENST00000493903 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9□□□□□ -0.97
GTF3A-208ENST00000493903 ATN1P54259 1190 aaPredicted RBP9□□□□□ -0.97
GTF3A-208ENST00000493903 ZFP91Q96JP5 570 aaPredicted RBP9□□□□□ -0.97
GTF3A-208ENST00000493903 ERICH6Q7L0X2 663 aa8.98□□□□□ -0.97
GTF3A-208ENST00000493903 PELP1Q8IZL8 1130 aaKnown RBP8.98□□□□□ -0.97
GTF3A-208ENST00000493903 TRIM35Q9UPQ4 493 aa8.97□□□□□ -0.97
GTF3A-208ENST00000493903 STK25O00506 426 aa8.95□□□□□ -0.98
GTF3A-208ENST00000493903 BCL11BQ9C0K0 894 aaPredicted RBP8.95□□□□□ -0.98
GTF3A-208ENST00000493903 CABP2Q9NPB3 220 aa8.93□□□□□ -0.98
GTF3A-208ENST00000493903 STK24Q9Y6E0 443 aa8.93□□□□□ -0.98
GTF3A-208ENST00000493903 GOLGA2Q08379 1002 aa8.91□□□□□ -0.98
GTF3A-208ENST00000493903 GTF3C3Q9Y5Q9 886 aa8.91□□□□□ -0.98
GTF3A-208ENST00000493903 GTPBP6O43824 516 aaPredicted RBP8.9□□□□□ -0.98
GTF3A-208ENST00000493903 NKX1-1Q15270 411 aaPredicted RBP8.9□□□□□ -0.98
GTF3A-208ENST00000493903 TIMELESSQ9UNS1 1208 aa8.9□□□□□ -0.98
GTF3A-208ENST00000493903 SLC39A7Q92504 469 aa8.89□□□□□ -0.99
GTF3A-208ENST00000493903 TULP1O00294 542 aaPredicted RBP8.88□□□□□ -0.99
GTF3A-208ENST00000493903 EFCAB3Q8N7B9 438 aa8.88□□□□□ -0.99
GTF3A-208ENST00000493903 METRNQ9UJH8 293 aa8.88□□□□□ -0.99
GTF3A-208ENST00000493903 MKRN3Q13064 507 aaKnown RBP8.87□□□□□ -0.99
GTF3A-208ENST00000493903 RYDENQ9NUL5 291 aaKnown RBP8.87□□□□□ -0.99
GTF3A-208ENST00000493903 C7P10643 843 aa8.86□□□□□ -0.99
GTF3A-208ENST00000493903 IER5LQ5T953 404 aa8.86□□□□□ -0.99
GTF3A-208ENST00000493903 TMEM132AQ24JP5 1023 aa8.85□□□□□ -0.99
GTF3A-208ENST00000493903 COLQQ9Y215 455 aaPredicted RBP8.84□□□□□ -0.99
GTF3A-208ENST00000493903 POTEFA5A3E0 1075 aa8.83□□□□□ -1
GTF3A-208ENST00000493903 IRX5P78411 483 aaPredicted RBP8.83□□□□□ -1
GTF3A-208ENST00000493903 SEC24BO95487 1268 aa8.82□□□□□ -1
GTF3A-208ENST00000493903 ARXQ96QS3 562 aa8.82□□□□□ -1
GTF3A-208ENST00000493903 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.82□□□□□ -11e-6■■□□□ 12.7
GTF3A-208ENST00000493903 P3H3Q8IVL6 736 aa8.81□□□□□ -1
GTF3A-208ENST00000493903 PLCG2P16885 1265 aa8.8□□□□□ -1
GTF3A-208ENST00000493903 PHF8Q9UPP1 1060 aa8.8□□□□□ -1
GTF3A-208ENST00000493903 SOX12O15370 315 aa8.79□□□□□ -1
GTF3A-208ENST00000493903 PDCD7Q8N8D1 485 aaKnown RBP8.79□□□□□ -1
GTF3A-208ENST00000493903 MFRPQ9BY79 579 aa8.79□□□□□ -1
GTF3A-208ENST00000493903 OCEL1Q9H607 264 aa8.79□□□□□ -1
GTF3A-208ENST00000493903 ILDR1Q86SU0 546 aaPredicted RBP8.78□□□□□ -1
GTF3A-208ENST00000493903 POTEB2H3BUK9 544 aa8.77□□□□□ -1.01
GTF3A-208ENST00000493903 NLRP6P59044 892 aa8.76□□□□□ -1.01
GTF3A-208ENST00000493903 FBXO22Q8NEZ5 403 aa8.76□□□□□ -1.01
GTF3A-208ENST00000493903 MS4A4AQ96JQ5 239 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms