RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 RASEFQ8IZ41 740 aa16.28■□□□□ 0.2
SCN1A-206ENST00000491429 PLCD3Q8N3E9 789 aa16.28■□□□□ 0.2
SCN1A-206ENST00000491429 POTEB2H3BUK9 544 aa16.24■□□□□ 0.19
SCN1A-206ENST00000491429 ASTLQ6HA08 431 aaPredicted RBP16.24■□□□□ 0.19
SCN1A-206ENST00000491429 KIF12Q96FN5 646 aa16.24■□□□□ 0.19
SCN1A-206ENST00000491429 ATMINO43313 823 aaPredicted RBP16.22■□□□□ 0.19
SCN1A-206ENST00000491429 MAP3K13O43283 966 aa16.16■□□□□ 0.18
SCN1A-206ENST00000491429 OTUD5Q96G74 571 aa16.16■□□□□ 0.18
SCN1A-206ENST00000491429 METRNQ9UJH8 293 aa16.15■□□□□ 0.18
SCN1A-206ENST00000491429 TRPC6Q9Y210 931 aa16.14■□□□□ 0.17
SCN1A-206ENST00000491429 ATN1P54259 1190 aaPredicted RBP16.12■□□□□ 0.17
SCN1A-206ENST00000491429 NUBP1P53384 320 aa16.11■□□□□ 0.17
SCN1A-206ENST00000491429 SLC39A7Q92504 469 aa16.1■□□□□ 0.17
SCN1A-206ENST00000491429 ZBTB47Q9UFB7 747 aaPredicted RBP16.1■□□□□ 0.17
SCN1A-206ENST00000491429 C7P10643 843 aa16.08■□□□□ 0.16
SCN1A-206ENST00000491429 BMP2KQ9NSY1 1161 aaPredicted RBP16.08■□□□□ 0.16
SCN1A-206ENST00000491429 POTEJP0CG39 1038 aa16.02■□□□□ 0.16
SCN1A-206ENST00000491429 TIE1P35590 1138 aa15.99■□□□□ 0.15
SCN1A-206ENST00000491429 FAM212AQ96EL1 285 aa15.97■□□□□ 0.15
SCN1A-206ENST00000491429 PCDHB13Q9Y5F0 798 aa15.97■□□□□ 0.15
SCN1A-206ENST00000491429 TTLL13PA6NNM8 815 aa15.95■□□□□ 0.14
SCN1A-206ENST00000491429 FBXO3Q9UK99 471 aa15.95■□□□□ 0.14
SCN1A-206ENST00000491429 POTEFA5A3E0 1075 aa15.93■□□□□ 0.14
SCN1A-206ENST00000491429 SGIP1Q9BQI5 828 aa15.93■□□□□ 0.14
SCN1A-206ENST00000491429 IFNL1Q8IU54 200 aa15.91■□□□□ 0.14
SCN1A-206ENST00000491429 DCAF8Q5TAQ9 597 aa15.84■□□□□ 0.13
SCN1A-206ENST00000491429 MAMSTRQ6ZN01 415 aa15.84■□□□□ 0.13
SCN1A-206ENST00000491429 TRIM35Q9UPQ4 493 aa15.84■□□□□ 0.13
SCN1A-206ENST00000491429 COLQQ9Y215 455 aaPredicted RBP15.84■□□□□ 0.13
SCN1A-206ENST00000491429 VASPP50552 380 aaPredicted RBP15.82■□□□□ 0.12
SCN1A-206ENST00000491429 PYGBP11216 843 aa15.8■□□□□ 0.12
SCN1A-206ENST00000491429 SEC24BO95487 1268 aa15.78■□□□□ 0.12
SCN1A-206ENST00000491429 TMEM106CQ9BVX2 250 aa15.78■□□□□ 0.12
SCN1A-206ENST00000491429 SCUBE2Q9NQ36 999 aa15.77■□□□□ 0.12
SCN1A-206ENST00000491429 KLHL34Q8N239 644 aa15.76■□□□□ 0.11
SCN1A-206ENST00000491429 IER5LQ5T953 404 aa15.75■□□□□ 0.11
SCN1A-206ENST00000491429 POTEMA6NI47 508 aa15.7■□□□□ 0.1
SCN1A-206ENST00000491429 PCDHB8Q9UN66 801 aa15.7■□□□□ 0.1
SCN1A-206ENST00000491429 POTEGQ6S5H5 508 aa15.67■□□□□ 0.1
SCN1A-206ENST00000491429 LCE2DQ5TA82 110 aaPredicted RBP15.63■□□□□ 0.09
SCN1A-206ENST00000491429 GSE1Q14687 1217 aa15.62■□□□□ 0.09
SCN1A-206ENST00000491429 PLSCR2Q9NRY7 297 aa15.62■□□□□ 0.09
SCN1A-206ENST00000491429 FAM163AQ96GL9 167 aaPredicted RBP15.61■□□□□ 0.09
SCN1A-206ENST00000491429 PLCG2P16885 1265 aa15.59■□□□□ 0.09
SCN1A-206ENST00000491429 IRX5P78411 483 aaPredicted RBP15.59■□□□□ 0.09
SCN1A-206ENST00000491429 IFNLR1Q8IU57 520 aaPredicted RBP15.56■□□□□ 0.08
SCN1A-206ENST00000491429 ZNF467Q7Z7K2 595 aaPredicted RBP15.52■□□□□ 0.08
SCN1A-206ENST00000491429 CHRM1P11229 460 aaPredicted RBP15.51■□□□□ 0.07
SCN1A-206ENST00000491429 OCEL1Q9H607 264 aa15.5■□□□□ 0.07
SCN1A-206ENST00000491429 SPOCK2Q92563 424 aa15.49■□□□□ 0.07
SCN1A-206ENST00000491429 SLAIN1Q8ND83 568 aa15.48■□□□□ 0.07
SCN1A-206ENST00000491429 CIZ1Q9ULV3 898 aaPredicted RBP15.43■□□□□ 0.06
SCN1A-206ENST00000491429 PSEN1P49768 467 aa15.42■□□□□ 0.06
SCN1A-206ENST00000491429 PDCD7Q8N8D1 485 aaKnown RBP15.39■□□□□ 0.05
SCN1A-206ENST00000491429 GOLGA2Q08379 1002 aa15.38■□□□□ 0.05
SCN1A-206ENST00000491429 PCDH10Q9P2E7 1040 aa15.37■□□□□ 0.05
SCN1A-206ENST00000491429 MKRN3Q13064 507 aaKnown RBP15.36■□□□□ 0.05
SCN1A-206ENST00000491429 PDAP1Q13442 181 aaKnown RBP15.33■□□□□ 0.04
SCN1A-206ENST00000491429 ST18O60284 1047 aa15.31■□□□□ 0.04
SCN1A-206ENST00000491429 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.31■□□□□ 0.04
SCN1A-206ENST00000491429 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.3■□□□□ 0.042e-6■□□□□ 11.3
SCN1A-206ENST00000491429 CABP2Q9NPB3 220 aa15.25■□□□□ 0.03
SCN1A-206ENST00000491429 ILDR1Q86SU0 546 aaPredicted RBP15.22■□□□□ 0.03
SCN1A-206ENST00000491429 L3MBTL3Q96JM7 780 aaPredicted RBP15.22■□□□□ 0.03
SCN1A-206ENST00000491429 C3orf67Q6ZVT6 689 aa15.21■□□□□ 0.03
SCN1A-206ENST00000491429 DPY19L2Q6NUT2 758 aa15.2■□□□□ 0.02
SCN1A-206ENST00000491429 CDAN1Q8IWY9 1227 aa15.19■□□□□ 0.02
SCN1A-206ENST00000491429 SNPHO15079 494 aa15.15■□□□□ 0.02
SCN1A-206ENST00000491429 TRIM41Q8WV44 630 aa15.14■□□□□ 0.01
SCN1A-206ENST00000491429 TMEM121BQ9BXQ6 578 aaPredicted RBP15.1■□□□□ 0.01
SCN1A-206ENST00000491429 MARVELD3Q96A59 401 aa15.08■□□□□ 0
SCN1A-206ENST00000491429 EFCAB3Q8N7B9 438 aa15.07■□□□□ 0
SCN1A-206ENST00000491429 RNF25Q96BH1 459 aaPredicted RBP15.06■□□□□ 0
SCN1A-206ENST00000491429 BOLA1Q9Y3E2 137 aa15.06■□□□□ 0
SCN1A-206ENST00000491429 G3V3G9 751 aa15.01□□□□□ -0.01
SCN1A-206ENST00000491429 RIOK3O14730 519 aaKnown RBP15.01□□□□□ -0.01
SCN1A-206ENST00000491429 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.97□□□□□ -0.01
SCN1A-206ENST00000491429 ZFP91Q96JP5 570 aaPredicted RBP14.97□□□□□ -0.01
SCN1A-206ENST00000491429 EMP3P54852 163 aa14.94□□□□□ -0.02
SCN1A-206ENST00000491429 VGFO15240 615 aaPredicted RBP14.92□□□□□ -0.02
SCN1A-206ENST00000491429 HOXB3P14651 431 aaPredicted RBP14.9□□□□□ -0.02
SCN1A-206ENST00000491429 POTEB3A0JP26 581 aa14.88□□□□□ -0.03
SCN1A-206ENST00000491429 POTEBQ6S5H4 581 aa14.88□□□□□ -0.03
SCN1A-206ENST00000491429 MS4A4AQ96JQ5 239 aa14.88□□□□□ -0.03
SCN1A-206ENST00000491429 SOX12O15370 315 aa14.86□□□□□ -0.03
SCN1A-206ENST00000491429 MICALL2Q8IY33 904 aa14.86□□□□□ -0.03
SCN1A-206ENST00000491429 PHF8Q9UPP1 1060 aa14.86□□□□□ -0.03
SCN1A-206ENST00000491429 FAM205CA6NFA0 338 aa14.84□□□□□ -0.03
SCN1A-206ENST00000491429 HS3ST6Q96QI5 342 aa14.84□□□□□ -0.03
SCN1A-206ENST00000491429 TMEM92Q6UXU6 159 aa14.83□□□□□ -0.04
SCN1A-206ENST00000491429 SPNS2Q8IVW8 549 aa14.83□□□□□ -0.04
SCN1A-206ENST00000491429 BCL11BQ9C0K0 894 aaPredicted RBP14.79□□□□□ -0.04
SCN1A-206ENST00000491429 ZNF710Q8N1W2 664 aa14.78□□□□□ -0.04
SCN1A-206ENST00000491429 MMRN1Q13201 1228 aa14.77□□□□□ -0.05
SCN1A-206ENST00000491429 DOK7Q18PE1 504 aa14.76□□□□□ -0.05
SCN1A-206ENST00000491429 KRTAP3-3Q9BYR6 98 aa14.76□□□□□ -0.05
SCN1A-206ENST00000491429 KRTAP3-2Q9BYR7 98 aa14.76□□□□□ -0.05
SCN1A-206ENST00000491429 HOXB1P14653 301 aaPredicted RBP14.75□□□□□ -0.05
SCN1A-206ENST00000491429 STK24Q9Y6E0 443 aa14.73□□□□□ -0.05
SCN1A-206ENST00000491429 ECM2O94769 699 aaPredicted RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms