RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 SLC39A7Q92504 469 aa11.12□□□□□ -0.63
VPS41-214ENST00000490924 C7P10643 843 aa11.1□□□□□ -0.63
VPS41-214ENST00000490924 MAMSTRQ6ZN01 415 aa11.07□□□□□ -0.64
VPS41-214ENST00000490924 METRNQ9UJH8 293 aa11.06□□□□□ -0.64
VPS41-214ENST00000490924 CCDC61Q9Y6R9 512 aa11.06□□□□□ -0.64
VPS41-214ENST00000490924 FKBP8Q14318 412 aa11.05□□□□□ -0.64
VPS41-214ENST00000490924 ASTLQ6HA08 431 aaPredicted RBP11.05□□□□□ -0.64
VPS41-214ENST00000490924 ATMINO43313 823 aaPredicted RBP11.03□□□□□ -0.64
VPS41-214ENST00000490924 KIF12Q96FN5 646 aa11.03□□□□□ -0.64
VPS41-214ENST00000490924 FBXO3Q9UK99 471 aa11.02□□□□□ -0.65
VPS41-214ENST00000490924 FAM212AQ96EL1 285 aa11□□□□□ -0.65
VPS41-214ENST00000490924 SCUBE2Q9NQ36 999 aa10.99□□□□□ -0.65
VPS41-214ENST00000490924 RASEFQ8IZ41 740 aa10.98□□□□□ -0.65
VPS41-214ENST00000490924 PELP1Q8IZL8 1130 aaKnown RBP10.98□□□□□ -0.65
VPS41-214ENST00000490924 MAP3K13O43283 966 aa10.97□□□□□ -0.65
VPS41-214ENST00000490924 TIE1P35590 1138 aa10.97□□□□□ -0.65
VPS41-214ENST00000490924 SEC24BO95487 1268 aa10.96□□□□□ -0.65
VPS41-214ENST00000490924 OTUD5Q96G74 571 aa10.96□□□□□ -0.65
VPS41-214ENST00000490924 SGIP1Q9BQI5 828 aa10.95□□□□□ -0.66
VPS41-214ENST00000490924 PCDHB13Q9Y5F0 798 aa10.95□□□□□ -0.66
VPS41-214ENST00000490924 ATN1P54259 1190 aaPredicted RBP10.94□□□□□ -0.66
VPS41-214ENST00000490924 POTEB2H3BUK9 544 aa10.9□□□□□ -0.66
VPS41-214ENST00000490924 BMP2KQ9NSY1 1161 aaPredicted RBP10.9□□□□□ -0.66
VPS41-214ENST00000490924 DCAF8Q5TAQ9 597 aa10.89□□□□□ -0.67
VPS41-214ENST00000490924 PLSCR2Q9NRY7 297 aa10.89□□□□□ -0.67
VPS41-214ENST00000490924 KLHL34Q8N239 644 aa10.88□□□□□ -0.67
VPS41-214ENST00000490924 NUBP1P53384 320 aa10.86□□□□□ -0.67
VPS41-214ENST00000490924 TTLL13PA6NNM8 815 aa10.84□□□□□ -0.67
VPS41-214ENST00000490924 IER5LQ5T953 404 aa10.83□□□□□ -0.68
VPS41-214ENST00000490924 TRIM35Q9UPQ4 493 aa10.81□□□□□ -0.68
VPS41-214ENST00000490924 POTEMA6NI47 508 aa10.8□□□□□ -0.68
VPS41-214ENST00000490924 TMEM106CQ9BVX2 250 aa10.8□□□□□ -0.68
VPS41-214ENST00000490924 TRPC6Q9Y210 931 aa10.8□□□□□ -0.68
VPS41-214ENST00000490924 PLCG2P16885 1265 aa10.78□□□□□ -0.68
VPS41-214ENST00000490924 POTEGQ6S5H5 508 aa10.78□□□□□ -0.68
VPS41-214ENST00000490924 FAM163AQ96GL9 167 aaPredicted RBP10.78□□□□□ -0.68
VPS41-214ENST00000490924 GSE1Q14687 1217 aa10.77□□□□□ -0.69
VPS41-214ENST00000490924 IFNL1Q8IU54 200 aa10.77□□□□□ -0.69
VPS41-214ENST00000490924 PCDH10Q9P2E7 1040 aa10.76□□□□□ -0.69
VPS41-214ENST00000490924 GOLGA2Q08379 1002 aa10.74□□□□□ -0.69
VPS41-214ENST00000490924 PYGBP11216 843 aa10.73□□□□□ -0.69
VPS41-214ENST00000490924 VASPP50552 380 aaPredicted RBP10.71□□□□□ -0.69
VPS41-214ENST00000490924 POTEJP0CG39 1038 aa10.7□□□□□ -0.7
VPS41-214ENST00000490924 ZNF467Q7Z7K2 595 aaPredicted RBP10.69□□□□□ -0.7
VPS41-214ENST00000490924 COLQQ9Y215 455 aaPredicted RBP10.69□□□□□ -0.7
VPS41-214ENST00000490924 POTEFA5A3E0 1075 aa10.66□□□□□ -0.7
VPS41-214ENST00000490924 SLAIN1Q8ND83 568 aa10.66□□□□□ -0.7
VPS41-214ENST00000490924 OCEL1Q9H607 264 aa10.65□□□□□ -0.7
VPS41-214ENST00000490924 MKRN3Q13064 507 aaKnown RBP10.64□□□□□ -0.71
VPS41-214ENST00000490924 PCDHB8Q9UN66 801 aa10.63□□□□□ -0.71
VPS41-214ENST00000490924 SNPHO15079 494 aa10.61□□□□□ -0.71
VPS41-214ENST00000490924 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.61□□□□□ -0.71
VPS41-214ENST00000490924 CIZ1Q9ULV3 898 aaPredicted RBP10.59□□□□□ -0.71
VPS41-214ENST00000490924 SPOCK2Q92563 424 aa10.58□□□□□ -0.72
VPS41-214ENST00000490924 G3V3G9 751 aa10.57□□□□□ -0.72
VPS41-214ENST00000490924 IRX5P78411 483 aaPredicted RBP10.57□□□□□ -0.72
VPS41-214ENST00000490924 CHRM1P11229 460 aaPredicted RBP10.56□□□□□ -0.72
VPS41-214ENST00000490924 C3orf67Q6ZVT6 689 aa10.56□□□□□ -0.72
VPS41-214ENST00000490924 L3MBTL3Q96JM7 780 aaPredicted RBP10.56□□□□□ -0.72
VPS41-214ENST00000490924 PSEN1P49768 467 aa10.53□□□□□ -0.72
VPS41-214ENST00000490924 PDAP1Q13442 181 aaKnown RBP10.51□□□□□ -0.73
VPS41-214ENST00000490924 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.5□□□□□ -0.73
VPS41-214ENST00000490924 TRIM41Q8WV44 630 aa10.47□□□□□ -0.73
VPS41-214ENST00000490924 CDAN1Q8IWY9 1227 aa10.46□□□□□ -0.73
VPS41-214ENST00000490924 TMEM121BQ9BXQ6 578 aaPredicted RBP10.46□□□□□ -0.73
VPS41-214ENST00000490924 ST18O60284 1047 aa10.45□□□□□ -0.74
VPS41-214ENST00000490924 LCE2DQ5TA82 110 aaPredicted RBP10.44□□□□□ -0.74
VPS41-214ENST00000490924 IFNLR1Q8IU57 520 aaPredicted RBP10.41□□□□□ -0.74
VPS41-214ENST00000490924 CABP2Q9NPB3 220 aa10.4□□□□□ -0.74
VPS41-214ENST00000490924 PDCD7Q8N8D1 485 aaKnown RBP10.37□□□□□ -0.75
VPS41-214ENST00000490924 EMP3P54852 163 aa10.32□□□□□ -0.76
VPS41-214ENST00000490924 TAOK2Q9UL54 1235 aa10.32□□□□□ -0.76
VPS41-214ENST00000490924 BOLA1Q9Y3E2 137 aa10.32□□□□□ -0.76
VPS41-214ENST00000490924 ZNF710Q8N1W2 664 aa10.29□□□□□ -0.76
VPS41-214ENST00000490924 MARVELD3Q96A59 401 aa10.29□□□□□ -0.76
VPS41-214ENST00000490924 RIMBP2O15034 1052 aa10.26□□□□□ -0.77
VPS41-214ENST00000490924 DOK7Q18PE1 504 aa10.24□□□□□ -0.77
VPS41-214ENST00000490924 RIOK3O14730 519 aaKnown RBP10.23□□□□□ -0.77
VPS41-214ENST00000490924 DPY19L2Q6NUT2 758 aa10.23□□□□□ -0.77
VPS41-214ENST00000490924 CCDC180Q9P1Z9 1646 aa10.22□□□□□ -0.77
VPS41-214ENST00000490924 VGFO15240 615 aaPredicted RBP10.21□□□□□ -0.77
VPS41-214ENST00000490924 ILDR1Q86SU0 546 aaPredicted RBP10.21□□□□□ -0.77
VPS41-214ENST00000490924 EFCAB3Q8N7B9 438 aa10.21□□□□□ -0.77
VPS41-214ENST00000490924 FAM205CA6NFA0 338 aa10.2□□□□□ -0.78
VPS41-214ENST00000490924 SOX12O15370 315 aa10.2□□□□□ -0.78
VPS41-214ENST00000490924 SPNS2Q8IVW8 549 aa10.15□□□□□ -0.78
VPS41-214ENST00000490924 HS3ST6Q96QI5 342 aa10.15□□□□□ -0.78
VPS41-214ENST00000490924 ERBB3P21860 1342 aa10.14□□□□□ -0.79
VPS41-214ENST00000490924 ZCCHC6Q5VYS8 1495 aaKnown RBP10.13□□□□□ -0.79
VPS41-214ENST00000490924 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.13□□□□□ -0.79
VPS41-214ENST00000490924 MMRN1Q13201 1228 aa10.13□□□□□ -0.79
VPS41-214ENST00000490924 ZFP91Q96JP5 570 aaPredicted RBP10.13□□□□□ -0.79
VPS41-214ENST00000490924 NLRP6P59044 892 aa10.11□□□□□ -0.79
VPS41-214ENST00000490924 HOXB1P14653 301 aaPredicted RBP10.09□□□□□ -0.79
VPS41-214ENST00000490924 MICALL2Q8IY33 904 aa10.09□□□□□ -0.79
VPS41-214ENST00000490924 ZSWIM6Q9HCJ5 1215 aa10.08□□□□□ -0.8
VPS41-214ENST00000490924 STK24Q9Y6E0 443 aa10.06□□□□□ -0.8
VPS41-214ENST00000490924 HOXB3P14651 431 aaPredicted RBP10.05□□□□□ -0.8
VPS41-214ENST00000490924 PHF8Q9UPP1 1060 aa10.05□□□□□ -0.8
VPS41-214ENST00000490924 BCL11BQ9C0K0 894 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms