RNA–Protein interactions for RNA: ENST00000490258.1

CRNKL1-203, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 2

Gene CRNKL1, Length 733 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-203ENST00000490258 ASTLQ6HA08 431 aaPredicted RBP9.64□□□□□ -0.87
CRNKL1-203ENST00000490258 SCUBE2Q9NQ36 999 aa9.64□□□□□ -0.87
CRNKL1-203ENST00000490258 CDAN1Q8IWY9 1227 aa9.62□□□□□ -0.87
CRNKL1-203ENST00000490258 ATMINO43313 823 aaPredicted RBP9.6□□□□□ -0.87
CRNKL1-203ENST00000490258 MS4A3Q96HJ5 214 aa9.53□□□□□ -0.88
CRNKL1-203ENST00000490258 STAG3Q9UJ98 1225 aa9.51□□□□□ -0.89
CRNKL1-203ENST00000490258 NPM1P06748 294 aaKnown RBP eCLIP9.47□□□□□ -0.89
CRNKL1-203ENST00000490258 MMRN1Q13201 1228 aa9.46□□□□□ -0.9
CRNKL1-203ENST00000490258 ATN1P54259 1190 aaPredicted RBP9.45□□□□□ -0.9
CRNKL1-203ENST00000490258 POTEFA5A3E0 1075 aa9.43□□□□□ -0.9
CRNKL1-203ENST00000490258 SPNS2Q8IVW8 549 aa9.4□□□□□ -0.9
CRNKL1-203ENST00000490258 MNX1P50219 401 aaPredicted RBP9.39□□□□□ -0.91
CRNKL1-203ENST00000490258 ST18O60284 1047 aa9.36□□□□□ -0.91
CRNKL1-203ENST00000490258 BMP2KQ9NSY1 1161 aaPredicted RBP9.33□□□□□ -0.92
CRNKL1-203ENST00000490258 COLQQ9Y215 455 aaPredicted RBP9.3□□□□□ -0.92
CRNKL1-203ENST00000490258 SEC24BO95487 1268 aa9.29□□□□□ -0.92
CRNKL1-203ENST00000490258 CSRNP3Q8WYN3 585 aa9.29□□□□□ -0.92
CRNKL1-203ENST00000490258 SLAIN1Q8ND83 568 aa9.27□□□□□ -0.93
CRNKL1-203ENST00000490258 TSPYL2Q9H2G4 693 aaPredicted RBP9.27□□□□□ -0.93
CRNKL1-203ENST00000490258 TIE1P35590 1138 aa9.26□□□□□ -0.93
CRNKL1-203ENST00000490258 KIF12Q96FN5 646 aa9.26□□□□□ -0.93
CRNKL1-203ENST00000490258 CCDC61Q9Y6R9 512 aa9.26□□□□□ -0.93
CRNKL1-203ENST00000490258 TRPC6Q9Y210 931 aa9.25□□□□□ -0.93
CRNKL1-203ENST00000490258 TMEM121BQ9BXQ6 578 aaPredicted RBP9.22□□□□□ -0.93
CRNKL1-203ENST00000490258 TTLL13PA6NNM8 815 aa9.18□□□□□ -0.94
CRNKL1-203ENST00000490258 IER5LQ5T953 404 aa9.18□□□□□ -0.94
CRNKL1-203ENST00000490258 MAP3K13O43283 966 aa9.16□□□□□ -0.94
CRNKL1-203ENST00000490258 EHMT2Q96KQ7 1210 aa9.15□□□□□ -0.94
CRNKL1-203ENST00000490258 TRIM35Q9UPQ4 493 aa9.13□□□□□ -0.95
CRNKL1-203ENST00000490258 SPDYE4A6NLX3 237 aa9.12□□□□□ -0.95
CRNKL1-203ENST00000490258 MARVELD3Q96A59 401 aa9.12□□□□□ -0.95
CRNKL1-203ENST00000490258 SNPHO15079 494 aa9.1□□□□□ -0.95
CRNKL1-203ENST00000490258 PLCG2P16885 1265 aa9.04□□□□□ -0.96
CRNKL1-203ENST00000490258 KRTAP3-3Q9BYR6 98 aa9.03□□□□□ -0.96
CRNKL1-203ENST00000490258 KRTAP3-2Q9BYR7 98 aa9.03□□□□□ -0.96
CRNKL1-203ENST00000490258 EMP3P54852 163 aa9□□□□□ -0.97
CRNKL1-203ENST00000490258 SGIP1Q9BQI5 828 aa9□□□□□ -0.97
CRNKL1-203ENST00000490258 IRX5P78411 483 aaPredicted RBP8.97□□□□□ -0.97
CRNKL1-203ENST00000490258 RASEFQ8IZ41 740 aa8.97□□□□□ -0.97
CRNKL1-203ENST00000490258 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.97□□□□□ -0.97
CRNKL1-203ENST00000490258 PCDHB13Q9Y5F0 798 aa8.97□□□□□ -0.97
CRNKL1-203ENST00000490258 HS3ST6Q96QI5 342 aa8.96□□□□□ -0.98
CRNKL1-203ENST00000490258 POTEB3A0JP26 581 aa8.95□□□□□ -0.98
CRNKL1-203ENST00000490258 POTEBQ6S5H4 581 aa8.95□□□□□ -0.98
CRNKL1-203ENST00000490258 TMEM106CQ9BVX2 250 aa8.93□□□□□ -0.98
CRNKL1-203ENST00000490258 FAM205CA6NFA0 338 aa8.92□□□□□ -0.98
CRNKL1-203ENST00000490258 OCEL1Q9H607 264 aa8.91□□□□□ -0.98
CRNKL1-203ENST00000490258 IFNL1Q8IU54 200 aa8.89□□□□□ -0.99
CRNKL1-203ENST00000490258 PLEKHG5O94827 1062 aa8.87□□□□□ -0.99
CRNKL1-203ENST00000490258 RNF166Q96A37 237 aaPredicted RBP8.86□□□□□ -0.99
CRNKL1-203ENST00000490258 C3orf67Q6ZVT6 689 aa8.8□□□□□ -1
CRNKL1-203ENST00000490258 MIER1Q8N108 512 aa8.8□□□□□ -1
CRNKL1-203ENST00000490258 PROM2Q8N271 834 aa8.77□□□□□ -1.01
CRNKL1-203ENST00000490258 MYT1LQ9UL68 1186 aa8.75□□□□□ -1.01
CRNKL1-203ENST00000490258 L3MBTL3Q96JM7 780 aaPredicted RBP8.72□□□□□ -1.01
CRNKL1-203ENST00000490258 NUBP1P53384 320 aa8.7□□□□□ -1.02
CRNKL1-203ENST00000490258 PDCD7Q8N8D1 485 aaKnown RBP8.7□□□□□ -1.02
CRNKL1-203ENST00000490258 FAM212AQ96EL1 285 aa8.67□□□□□ -1.02
CRNKL1-203ENST00000490258 ERBB3P21860 1342 aa8.66□□□□□ -1.02
CRNKL1-203ENST00000490258 HOXB1P14653 301 aaPredicted RBP8.65□□□□□ -1.02
CRNKL1-203ENST00000490258 PLCD3Q8N3E9 789 aa8.64□□□□□ -1.03
CRNKL1-203ENST00000490258 ZBTB47Q9UFB7 747 aaPredicted RBP8.64□□□□□ -1.03
CRNKL1-203ENST00000490258 HOXB3P14651 431 aaPredicted RBP8.63□□□□□ -1.03
CRNKL1-203ENST00000490258 PTGER2P43116 358 aa8.61□□□□□ -1.03
CRNKL1-203ENST00000490258 ZNF710Q8N1W2 664 aa8.61□□□□□ -1.03
CRNKL1-203ENST00000490258 MKRN3Q13064 507 aaKnown RBP8.59□□□□□ -1.03
CRNKL1-203ENST00000490258 VARS2Q5ST30 1063 aaKnown RBP8.58□□□□□ -1.04
CRNKL1-203ENST00000490258 PCDHB8Q9UN66 801 aa8.58□□□□□ -1.04
CRNKL1-203ENST00000490258 GOLGA2Q08379 1002 aa8.57□□□□□ -1.04
CRNKL1-203ENST00000490258 PYGBP11216 843 aa8.56□□□□□ -1.04
CRNKL1-203ENST00000490258 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.56□□□□□ -1.041e-6■■■■■ 30.6
CRNKL1-203ENST00000490258 DOK7Q18PE1 504 aa8.55□□□□□ -1.04
CRNKL1-203ENST00000490258 ZNF687Q8N1G0 1237 aa8.54□□□□□ -1.04
CRNKL1-203ENST00000490258 PLA2G2EQ9NZK7 142 aa8.51□□□□□ -1.05
CRNKL1-203ENST00000490258 RIMBP2O15034 1052 aa8.49□□□□□ -1.05
CRNKL1-203ENST00000490258 DCAF8Q5TAQ9 597 aa8.49□□□□□ -1.05
CRNKL1-203ENST00000490258 ILDR1Q86SU0 546 aaPredicted RBP8.48□□□□□ -1.05
CRNKL1-203ENST00000490258 G3V3G9 751 aa8.47□□□□□ -1.05
CRNKL1-203ENST00000490258 DPY19L2Q6NUT2 758 aa8.47□□□□□ -1.05
CRNKL1-203ENST00000490258 ANKRD13DQ6ZTN6 518 aa8.46□□□□□ -1.06
CRNKL1-203ENST00000490258 BOLA1Q9Y3E2 137 aa8.46□□□□□ -1.06
CRNKL1-203ENST00000490258 ZNF467Q7Z7K2 595 aaPredicted RBP8.43□□□□□ -1.06
CRNKL1-203ENST00000490258 ZSWIM6Q9HCJ5 1215 aa8.41□□□□□ -1.06
CRNKL1-203ENST00000490258 PSEN1P49768 467 aa8.38□□□□□ -1.07
CRNKL1-203ENST00000490258 HCSTQ9UBK5 93 aa8.38□□□□□ -1.07
CRNKL1-203ENST00000490258 LSM11P83369 360 aaKnown RBP eCLIP8.37□□□□□ -1.07
CRNKL1-203ENST00000490258 GPR153Q6NV75 609 aa8.36□□□□□ -1.07
CRNKL1-203ENST00000490258 FKBP8Q14318 412 aa8.28□□□□□ -1.08
CRNKL1-203ENST00000490258 CABP2Q9NPB3 220 aa8.28□□□□□ -1.08
CRNKL1-203ENST00000490258 ZNF316A6NFI3 1004 aaPredicted RBP8.27□□□□□ -1.09
CRNKL1-203ENST00000490258 CHRM1P11229 460 aaPredicted RBP8.27□□□□□ -1.09
CRNKL1-203ENST00000490258 PDAP1Q13442 181 aaKnown RBP8.27□□□□□ -1.09
CRNKL1-203ENST00000490258 IRX2Q9BZI1 471 aaPredicted RBP8.27□□□□□ -1.09
CRNKL1-203ENST00000490258 GSE1Q14687 1217 aa8.26□□□□□ -1.09
CRNKL1-203ENST00000490258 ARSIQ5FYB1 569 aa8.26□□□□□ -1.09
CRNKL1-203ENST00000490258 PBX2P40425 430 aa8.24□□□□□ -1.09
CRNKL1-203ENST00000490258 TMEM92Q6UXU6 159 aa8.24□□□□□ -1.09
CRNKL1-203ENST00000490258 RGS20O76081 388 aa8.23□□□□□ -1.09
CRNKL1-203ENST00000490258 MICALL2Q8IY33 904 aa8.18□□□□□ -1.1
CRNKL1-203ENST00000490258 KHSRPQ92945 711 aaKnown RBP eCLIP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms