RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 IFNLR1Q8IU57 520 aaPredicted RBP12.51□□□□□ -0.41
HMGN1-218ENST00000490032 KLHL34Q8N239 644 aa12.5□□□□□ -0.41
HMGN1-218ENST00000490032 FAM212AQ96EL1 285 aa12.46□□□□□ -0.41
HMGN1-218ENST00000490032 GALR2O43603 387 aaPredicted RBP12.44□□□□□ -0.42
HMGN1-218ENST00000490032 KIF12Q96FN5 646 aa12.42□□□□□ -0.42
HMGN1-218ENST00000490032 SPOCK2Q92563 424 aa12.4□□□□□ -0.42
HMGN1-218ENST00000490032 MS4A3Q96HJ5 214 aa12.39□□□□□ -0.43
HMGN1-218ENST00000490032 DCAF8Q5TAQ9 597 aa12.38□□□□□ -0.43
HMGN1-218ENST00000490032 POTEIP0CG38 1075 aa12.37□□□□□ -0.43
HMGN1-218ENST00000490032 MAP3K13O43283 966 aa12.35□□□□□ -0.43
HMGN1-218ENST00000490032 GSE1Q14687 1217 aa12.35□□□□□ -0.43
HMGN1-218ENST00000490032 DCBLD2Q96PD2 775 aa12.34□□□□□ -0.43
HMGN1-218ENST00000490032 SGIP1Q9BQI5 828 aa12.33□□□□□ -0.44
HMGN1-218ENST00000490032 PYGBP11216 843 aa12.27□□□□□ -0.45
HMGN1-218ENST00000490032 PCDHB13Q9Y5F0 798 aa12.27□□□□□ -0.45
HMGN1-218ENST00000490032 CHRM1P11229 460 aaPredicted RBP12.25□□□□□ -0.45
HMGN1-218ENST00000490032 ASTLQ6HA08 431 aaPredicted RBP12.24□□□□□ -0.45
HMGN1-218ENST00000490032 IFNL1Q8IU54 200 aa12.23□□□□□ -0.45
HMGN1-218ENST00000490032 TRPC6Q9Y210 931 aa12.23□□□□□ -0.45
HMGN1-218ENST00000490032 CIZ1Q9ULV3 898 aaPredicted RBP12.22□□□□□ -0.45
HMGN1-218ENST00000490032 ATMINO43313 823 aaPredicted RBP12.21□□□□□ -0.45
HMGN1-218ENST00000490032 TIE1P35590 1138 aa12.21□□□□□ -0.45
HMGN1-218ENST00000490032 BMP2KQ9NSY1 1161 aaPredicted RBP12.19□□□□□ -0.46
HMGN1-218ENST00000490032 PELP1Q8IZL8 1130 aaKnown RBP12.17□□□□□ -0.46
HMGN1-218ENST00000490032 ATN1P54259 1190 aaPredicted RBP12.15□□□□□ -0.46
HMGN1-218ENST00000490032 TRIM41Q8WV44 630 aa12.15□□□□□ -0.46
HMGN1-218ENST00000490032 TTLL13PA6NNM8 815 aa12.14□□□□□ -0.47
HMGN1-218ENST00000490032 ZNF467Q7Z7K2 595 aaPredicted RBP12.14□□□□□ -0.47
HMGN1-218ENST00000490032 PCDHB8Q9UN66 801 aa12.14□□□□□ -0.47
HMGN1-218ENST00000490032 SLC39A7Q92504 469 aa12.09□□□□□ -0.47
HMGN1-218ENST00000490032 C7P10643 843 aa12.07□□□□□ -0.48
HMGN1-218ENST00000490032 TMEM106CQ9BVX2 250 aa12.07□□□□□ -0.48
HMGN1-218ENST00000490032 LHX8Q68G74 356 aa12.06□□□□□ -0.48
HMGN1-218ENST00000490032 METRNQ9UJH8 293 aa12.05□□□□□ -0.48
HMGN1-218ENST00000490032 TRIM35Q9UPQ4 493 aa12.04□□□□□ -0.48
HMGN1-218ENST00000490032 PSEN1P49768 467 aa12□□□□□ -0.49
HMGN1-218ENST00000490032 PDAP1Q13442 181 aaKnown RBP12□□□□□ -0.49
HMGN1-218ENST00000490032 IER5LQ5T953 404 aa12□□□□□ -0.49
HMGN1-218ENST00000490032 PKD2Q13563 968 aa11.98□□□□□ -0.49
HMGN1-218ENST00000490032 RNF25Q96BH1 459 aaPredicted RBP11.98□□□□□ -0.49
HMGN1-218ENST00000490032 POTEFA5A3E0 1075 aa11.97□□□□□ -0.49
HMGN1-218ENST00000490032 POTEB2H3BUK9 544 aa11.97□□□□□ -0.49
HMGN1-218ENST00000490032 RIOK3O14730 519 aaKnown RBP11.94□□□□□ -0.5
HMGN1-218ENST00000490032 ECM2O94769 699 aaPredicted RBP11.93□□□□□ -0.5
HMGN1-218ENST00000490032 COLQQ9Y215 455 aaPredicted RBP11.92□□□□□ -0.5
HMGN1-218ENST00000490032 IRX5P78411 483 aaPredicted RBP11.9□□□□□ -0.5
HMGN1-218ENST00000490032 VGFO15240 615 aaPredicted RBP11.89□□□□□ -0.51
HMGN1-218ENST00000490032 SEC24BO95487 1268 aa11.89□□□□□ -0.51
HMGN1-218ENST00000490032 POTEJP0CG39 1038 aa11.87□□□□□ -0.51
HMGN1-218ENST00000490032 GOLGA2Q08379 1002 aa11.86□□□□□ -0.51
HMGN1-218ENST00000490032 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.84□□□□□ -0.51
HMGN1-218ENST00000490032 RGL2O15211 777 aa11.84□□□□□ -0.51
HMGN1-218ENST00000490032 PLCG2P16885 1265 aa11.84□□□□□ -0.51
HMGN1-218ENST00000490032 MKRN3Q13064 507 aaKnown RBP11.84□□□□□ -0.51
HMGN1-218ENST00000490032 OTUD5Q96G74 571 aa11.84□□□□□ -0.51
HMGN1-218ENST00000490032 ZFP91Q96JP5 570 aaPredicted RBP11.84□□□□□ -0.51
HMGN1-218ENST00000490032 OCEL1Q9H607 264 aa11.84□□□□□ -0.51
HMGN1-218ENST00000490032 CABP2Q9NPB3 220 aa11.84□□□□□ -0.51
HMGN1-218ENST00000490032 TAOK2Q9UL54 1235 aa11.83□□□□□ -0.52
HMGN1-218ENST00000490032 ILDR1Q86SU0 546 aaPredicted RBP11.81□□□□□ -0.52
HMGN1-218ENST00000490032 MAMSTRQ6ZN01 415 aa11.8□□□□□ -0.52
HMGN1-218ENST00000490032 PDCD7Q8N8D1 485 aaKnown RBP11.79□□□□□ -0.52
HMGN1-218ENST00000490032 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.77□□□□□ -0.538e-8■■□□□ 13
HMGN1-218ENST00000490032 EFCAB3Q8N7B9 438 aa11.75□□□□□ -0.53
HMGN1-218ENST00000490032 BCL11BQ9C0K0 894 aaPredicted RBP11.74□□□□□ -0.53
HMGN1-218ENST00000490032 SCUBE2Q9NQ36 999 aa11.74□□□□□ -0.53
HMGN1-218ENST00000490032 STK25O00506 426 aa11.7□□□□□ -0.54
HMGN1-218ENST00000490032 SOX12O15370 315 aa11.7□□□□□ -0.54
HMGN1-218ENST00000490032 STK24Q9Y6E0 443 aa11.7□□□□□ -0.54
HMGN1-218ENST00000490032 L3MBTL3Q96JM7 780 aaPredicted RBP11.67□□□□□ -0.54
HMGN1-218ENST00000490032 DPY19L2Q6NUT2 758 aa11.66□□□□□ -0.54
HMGN1-218ENST00000490032 PHF8Q9UPP1 1060 aa11.63□□□□□ -0.55
HMGN1-218ENST00000490032 HS6ST3Q8IZP7 471 aa11.61□□□□□ -0.55
HMGN1-218ENST00000490032 MS4A4AQ96JQ5 239 aa11.61□□□□□ -0.55
HMGN1-218ENST00000490032 NLRP6P59044 892 aa11.59□□□□□ -0.55
HMGN1-218ENST00000490032 FBXO22Q8NEZ5 403 aa11.59□□□□□ -0.55
HMGN1-218ENST00000490032 MFRPQ9BY79 579 aa11.59□□□□□ -0.55
HMGN1-218ENST00000490032 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.58□□□□□ -0.56
HMGN1-218ENST00000490032 BOLA1Q9Y3E2 137 aa11.58□□□□□ -0.56
HMGN1-218ENST00000490032 SLAIN1Q8ND83 568 aa11.57□□□□□ -0.56
HMGN1-218ENST00000490032 TMEM121BQ9BXQ6 578 aaPredicted RBP11.57□□□□□ -0.56
HMGN1-218ENST00000490032 AMER1Q5JTC6 1135 aaPredicted RBP11.55□□□□□ -0.56
HMGN1-218ENST00000490032 C3orf67Q6ZVT6 689 aa11.55□□□□□ -0.56
HMGN1-218ENST00000490032 DNAJC5Q9H3Z4 198 aa11.55□□□□□ -0.56
HMGN1-218ENST00000490032 CHGAP10645 457 aaKnown RBP11.54□□□□□ -0.56
HMGN1-218ENST00000490032 G3V3G9 751 aa11.53□□□□□ -0.56
HMGN1-218ENST00000490032 MICALL2Q8IY33 904 aa11.51□□□□□ -0.57
HMGN1-218ENST00000490032 RTN4Q9NQC3 1192 aaKnown RBP11.48□□□□□ -0.57
HMGN1-218ENST00000490032 NKX1-1Q15270 411 aaPredicted RBP11.44□□□□□ -0.58
HMGN1-218ENST00000490032 LCE2DQ5TA82 110 aaPredicted RBP11.44□□□□□ -0.58
HMGN1-218ENST00000490032 DCAF8L2P0C7V8 631 aa11.42□□□□□ -0.58
HMGN1-218ENST00000490032 FAM163AQ96GL9 167 aaPredicted RBP11.41□□□□□ -0.58
HMGN1-218ENST00000490032 SNPHO15079 494 aa11.4□□□□□ -0.58
HMGN1-218ENST00000490032 TMEM92Q6UXU6 159 aa11.4□□□□□ -0.58
HMGN1-218ENST00000490032 PPP1R37O75864 691 aa11.39□□□□□ -0.59
HMGN1-218ENST00000490032 RYDENQ9NUL5 291 aaKnown RBP11.37□□□□□ -0.59
HMGN1-218ENST00000490032 ST18O60284 1047 aa11.34□□□□□ -0.59
HMGN1-218ENST00000490032 POTEMA6NI47 508 aa11.32□□□□□ -0.6
HMGN1-218ENST00000490032 GTPBP6O43824 516 aaPredicted RBP11.31□□□□□ -0.6
HMGN1-218ENST00000490032 POTEGQ6S5H5 508 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms