RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 ASTLQ6HA08 431 aaPredicted RBP11.59□□□□□ -0.55
DEPDC1-204ENST00000489862 STAG3Q9UJ98 1225 aa11.59□□□□□ -0.55
DEPDC1-204ENST00000489862 POTEJP0CG39 1038 aa11.57□□□□□ -0.56
DEPDC1-204ENST00000489862 CDAN1Q8IWY9 1227 aa11.56□□□□□ -0.56
DEPDC1-204ENST00000489862 ATMINO43313 823 aaPredicted RBP11.53□□□□□ -0.56
DEPDC1-204ENST00000489862 NPM1P06748 294 aaKnown RBP eCLIP11.53□□□□□ -0.56
DEPDC1-204ENST00000489862 MS4A3Q96HJ5 214 aa11.46□□□□□ -0.58
DEPDC1-204ENST00000489862 ATN1P54259 1190 aaPredicted RBP11.35□□□□□ -0.59
DEPDC1-204ENST00000489862 MMRN1Q13201 1228 aa11.34□□□□□ -0.59
DEPDC1-204ENST00000489862 SPNS2Q8IVW8 549 aa11.27□□□□□ -0.6
DEPDC1-204ENST00000489862 SEC24BO95487 1268 aa11.26□□□□□ -0.61
DEPDC1-204ENST00000489862 POTEFA5A3E0 1075 aa11.25□□□□□ -0.61
DEPDC1-204ENST00000489862 MNX1P50219 401 aaPredicted RBP11.24□□□□□ -0.61
DEPDC1-204ENST00000489862 ST18O60284 1047 aa11.23□□□□□ -0.61
DEPDC1-204ENST00000489862 BMP2KQ9NSY1 1161 aaPredicted RBP11.2□□□□□ -0.62
DEPDC1-204ENST00000489862 TIE1P35590 1138 aa11.19□□□□□ -0.62
DEPDC1-204ENST00000489862 SLAIN1Q8ND83 568 aa11.17□□□□□ -0.62
DEPDC1-204ENST00000489862 TSPYL2Q9H2G4 693 aaPredicted RBP11.17□□□□□ -0.62
DEPDC1-204ENST00000489862 KIF12Q96FN5 646 aa11.14□□□□□ -0.63
DEPDC1-204ENST00000489862 TMEM121BQ9BXQ6 578 aaPredicted RBP11.14□□□□□ -0.63
DEPDC1-204ENST00000489862 CCDC61Q9Y6R9 512 aa11.13□□□□□ -0.63
DEPDC1-204ENST00000489862 COLQQ9Y215 455 aaPredicted RBP11.12□□□□□ -0.63
DEPDC1-204ENST00000489862 IER5LQ5T953 404 aa11.11□□□□□ -0.63
DEPDC1-204ENST00000489862 SNPHO15079 494 aa11.07□□□□□ -0.64
DEPDC1-204ENST00000489862 TRPC6Q9Y210 931 aa11.05□□□□□ -0.64
DEPDC1-204ENST00000489862 SPDYE4A6NLX3 237 aa11.04□□□□□ -0.64
DEPDC1-204ENST00000489862 TTLL13PA6NNM8 815 aa11.04□□□□□ -0.64
DEPDC1-204ENST00000489862 MAP3K13O43283 966 aa11.01□□□□□ -0.65
DEPDC1-204ENST00000489862 TRIM35Q9UPQ4 493 aa10.99□□□□□ -0.65
DEPDC1-204ENST00000489862 PLCG2P16885 1265 aa10.95□□□□□ -0.66
DEPDC1-204ENST00000489862 MARVELD3Q96A59 401 aa10.92□□□□□ -0.66
DEPDC1-204ENST00000489862 SGIP1Q9BQI5 828 aa10.91□□□□□ -0.66
DEPDC1-204ENST00000489862 PLEKHG5O94827 1062 aa10.88□□□□□ -0.67
DEPDC1-204ENST00000489862 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.87□□□□□ -0.67
DEPDC1-204ENST00000489862 EMP3P54852 163 aa10.86□□□□□ -0.67
DEPDC1-204ENST00000489862 PCDHB13Q9Y5F0 798 aa10.84□□□□□ -0.67
DEPDC1-204ENST00000489862 KRTAP3-3Q9BYR6 98 aa10.8□□□□□ -0.68
DEPDC1-204ENST00000489862 KRTAP3-2Q9BYR7 98 aa10.8□□□□□ -0.68
DEPDC1-204ENST00000489862 IRX5P78411 483 aaPredicted RBP10.78□□□□□ -0.68
DEPDC1-204ENST00000489862 TMEM106CQ9BVX2 250 aa10.78□□□□□ -0.68
DEPDC1-204ENST00000489862 RASEFQ8IZ41 740 aa10.77□□□□□ -0.68
DEPDC1-204ENST00000489862 HS3ST6Q96QI5 342 aa10.77□□□□□ -0.68
DEPDC1-204ENST00000489862 OCEL1Q9H607 264 aa10.76□□□□□ -0.69
DEPDC1-204ENST00000489862 FAM205CA6NFA0 338 aa10.73□□□□□ -0.69
DEPDC1-204ENST00000489862 IFNL1Q8IU54 200 aa10.69□□□□□ -0.7
DEPDC1-204ENST00000489862 MIER1Q8N108 512 aa10.68□□□□□ -0.7
DEPDC1-204ENST00000489862 RNF166Q96A37 237 aaPredicted RBP10.68□□□□□ -0.7
DEPDC1-204ENST00000489862 C3orf67Q6ZVT6 689 aa10.66□□□□□ -0.7
DEPDC1-204ENST00000489862 POTEB3A0JP26 581 aa10.65□□□□□ -0.7
DEPDC1-204ENST00000489862 POTEBQ6S5H4 581 aa10.65□□□□□ -0.7
DEPDC1-204ENST00000489862 L3MBTL3Q96JM7 780 aaPredicted RBP10.6□□□□□ -0.71
DEPDC1-204ENST00000489862 ZBTB47Q9UFB7 747 aaPredicted RBP10.58□□□□□ -0.72
DEPDC1-204ENST00000489862 PROM2Q8N271 834 aa10.57□□□□□ -0.72
DEPDC1-204ENST00000489862 MYT1LQ9UL68 1186 aa10.56□□□□□ -0.72
DEPDC1-204ENST00000489862 FAM212AQ96EL1 285 aa10.54□□□□□ -0.72
DEPDC1-204ENST00000489862 PLCD3Q8N3E9 789 aa10.51□□□□□ -0.73
DEPDC1-204ENST00000489862 ERBB3P21860 1342 aa10.48□□□□□ -0.73
DEPDC1-204ENST00000489862 PTGER2P43116 358 aa10.47□□□□□ -0.73
DEPDC1-204ENST00000489862 NUBP1P53384 320 aa10.47□□□□□ -0.73
DEPDC1-204ENST00000489862 GOLGA2Q08379 1002 aa10.45□□□□□ -0.74
DEPDC1-204ENST00000489862 ZNF710Q8N1W2 664 aa10.45□□□□□ -0.74
DEPDC1-204ENST00000489862 PDCD7Q8N8D1 485 aaKnown RBP10.44□□□□□ -0.74
DEPDC1-204ENST00000489862 CSRNP3Q8WYN3 585 aa10.44□□□□□ -0.74
DEPDC1-204ENST00000489862 EHMT2Q96KQ7 1210 aa10.44□□□□□ -0.74
DEPDC1-204ENST00000489862 HOXB1P14653 301 aaPredicted RBP10.44□□□□□ -0.74
DEPDC1-204ENST00000489862 MKRN3Q13064 507 aaKnown RBP10.44□□□□□ -0.74
DEPDC1-204ENST00000489862 DOK7Q18PE1 504 aa10.38□□□□□ -0.75
DEPDC1-204ENST00000489862 G3V3G9 751 aa10.36□□□□□ -0.75
DEPDC1-204ENST00000489862 DCAF8Q5TAQ9 597 aa10.36□□□□□ -0.75
DEPDC1-204ENST00000489862 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.36□□□□□ -0.753e-6■■■□□ 15.8
DEPDC1-204ENST00000489862 RIMBP2O15034 1052 aa10.35□□□□□ -0.75
DEPDC1-204ENST00000489862 HOXB3P14651 431 aaPredicted RBP10.35□□□□□ -0.75
DEPDC1-204ENST00000489862 PCDHB8Q9UN66 801 aa10.33□□□□□ -0.76
DEPDC1-204ENST00000489862 VARS2Q5ST30 1063 aaKnown RBP10.33□□□□□ -0.76
DEPDC1-204ENST00000489862 PYGBP11216 843 aa10.32□□□□□ -0.76
DEPDC1-204ENST00000489862 ZNF687Q8N1G0 1237 aa10.31□□□□□ -0.76
DEPDC1-204ENST00000489862 PLA2G2EQ9NZK7 142 aa10.27□□□□□ -0.77
DEPDC1-204ENST00000489862 ZNF467Q7Z7K2 595 aaPredicted RBP10.26□□□□□ -0.77
DEPDC1-204ENST00000489862 BOLA1Q9Y3E2 137 aa10.23□□□□□ -0.77
DEPDC1-204ENST00000489862 ZSWIM6Q9HCJ5 1215 aa10.22□□□□□ -0.77
DEPDC1-204ENST00000489862 ANKRD13DQ6ZTN6 518 aa10.21□□□□□ -0.78
DEPDC1-204ENST00000489862 ILDR1Q86SU0 546 aaPredicted RBP10.18□□□□□ -0.78
DEPDC1-204ENST00000489862 HCSTQ9UBK5 93 aa10.15□□□□□ -0.78
DEPDC1-204ENST00000489862 PSEN1P49768 467 aa10.14□□□□□ -0.79
DEPDC1-204ENST00000489862 DPY19L2Q6NUT2 758 aa10.14□□□□□ -0.79
DEPDC1-204ENST00000489862 LSM11P83369 360 aaKnown RBP eCLIP10.09□□□□□ -0.79
DEPDC1-204ENST00000489862 GSE1Q14687 1217 aa10.08□□□□□ -0.8
DEPDC1-204ENST00000489862 GPR153Q6NV75 609 aa10.05□□□□□ -0.8
DEPDC1-204ENST00000489862 PDAP1Q13442 181 aaKnown RBP10.04□□□□□ -0.8
DEPDC1-204ENST00000489862 CHRM1P11229 460 aaPredicted RBP10.03□□□□□ -0.8
DEPDC1-204ENST00000489862 RGS20O76081 388 aa10□□□□□ -0.81
DEPDC1-204ENST00000489862 PBX2P40425 430 aa10□□□□□ -0.81
DEPDC1-204ENST00000489862 IRX2Q9BZI1 471 aaPredicted RBP10□□□□□ -0.81
DEPDC1-204ENST00000489862 CABP2Q9NPB3 220 aa10□□□□□ -0.81
DEPDC1-204ENST00000489862 ZNF316A6NFI3 1004 aaPredicted RBP10□□□□□ -0.81
DEPDC1-204ENST00000489862 ARSIQ5FYB1 569 aa9.94□□□□□ -0.82
DEPDC1-204ENST00000489862 TMEM92Q6UXU6 159 aa9.86□□□□□ -0.83
DEPDC1-204ENST00000489862 MICALL2Q8IY33 904 aa9.86□□□□□ -0.83
DEPDC1-204ENST00000489862 KLHL34Q8N239 644 aa9.84□□□□□ -0.83
DEPDC1-204ENST00000489862 ADGRD1Q6QNK2 874 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms