RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 POTEIP0CG38 1075 aa12.19□□□□□ -0.46
XRN1-213ENST00000489241 VASPP50552 380 aaPredicted RBP12.17□□□□□ -0.46
XRN1-213ENST00000489241 NUBP1P53384 320 aa12.15□□□□□ -0.46
XRN1-213ENST00000489241 MS4A3Q96HJ5 214 aa12.13□□□□□ -0.47
XRN1-213ENST00000489241 FAM212AQ96EL1 285 aa12.09□□□□□ -0.47
XRN1-213ENST00000489241 KIF12Q96FN5 646 aa12.09□□□□□ -0.47
XRN1-213ENST00000489241 KLHL34Q8N239 644 aa12.04□□□□□ -0.48
XRN1-213ENST00000489241 MAP3K13O43283 966 aa12.03□□□□□ -0.48
XRN1-213ENST00000489241 LHX8Q68G74 356 aa12.02□□□□□ -0.49
XRN1-213ENST00000489241 ASTLQ6HA08 431 aaPredicted RBP12□□□□□ -0.49
XRN1-213ENST00000489241 SGIP1Q9BQI5 828 aa11.98□□□□□ -0.49
XRN1-213ENST00000489241 ATMINO43313 823 aaPredicted RBP11.97□□□□□ -0.49
XRN1-213ENST00000489241 DCAF8Q5TAQ9 597 aa11.96□□□□□ -0.49
XRN1-213ENST00000489241 PCDHB13Q9Y5F0 798 aa11.96□□□□□ -0.49
XRN1-213ENST00000489241 PELP1Q8IZL8 1130 aaKnown RBP11.94□□□□□ -0.5
XRN1-213ENST00000489241 TIE1P35590 1138 aa11.93□□□□□ -0.5
XRN1-213ENST00000489241 IFNLR1Q8IU57 520 aaPredicted RBP11.93□□□□□ -0.5
XRN1-213ENST00000489241 TRPC6Q9Y210 931 aa11.93□□□□□ -0.5
XRN1-213ENST00000489241 BMP2KQ9NSY1 1161 aaPredicted RBP11.92□□□□□ -0.5
XRN1-213ENST00000489241 GSE1Q14687 1217 aa11.91□□□□□ -0.5
XRN1-213ENST00000489241 SLC39A7Q92504 469 aa11.9□□□□□ -0.5
XRN1-213ENST00000489241 ATN1P54259 1190 aaPredicted RBP11.89□□□□□ -0.51
XRN1-213ENST00000489241 IFNL1Q8IU54 200 aa11.89□□□□□ -0.51
XRN1-213ENST00000489241 SPOCK2Q92563 424 aa11.89□□□□□ -0.51
XRN1-213ENST00000489241 PYGBP11216 843 aa11.88□□□□□ -0.51
XRN1-213ENST00000489241 METRNQ9UJH8 293 aa11.88□□□□□ -0.51
XRN1-213ENST00000489241 C7P10643 843 aa11.86□□□□□ -0.51
XRN1-213ENST00000489241 TTLL13PA6NNM8 815 aa11.85□□□□□ -0.51
XRN1-213ENST00000489241 POTEB2H3BUK9 544 aa11.79□□□□□ -0.52
XRN1-213ENST00000489241 CHRM1P11229 460 aaPredicted RBP11.78□□□□□ -0.52
XRN1-213ENST00000489241 TMEM106CQ9BVX2 250 aa11.78□□□□□ -0.52
XRN1-213ENST00000489241 TRIM35Q9UPQ4 493 aa11.78□□□□□ -0.52
XRN1-213ENST00000489241 CIZ1Q9ULV3 898 aaPredicted RBP11.77□□□□□ -0.53
XRN1-213ENST00000489241 ZNF467Q7Z7K2 595 aaPredicted RBP11.76□□□□□ -0.53
XRN1-213ENST00000489241 PCDHB8Q9UN66 801 aa11.76□□□□□ -0.53
XRN1-213ENST00000489241 IER5LQ5T953 404 aa11.74□□□□□ -0.53
XRN1-213ENST00000489241 POTEFA5A3E0 1075 aa11.71□□□□□ -0.53
XRN1-213ENST00000489241 OTUD5Q96G74 571 aa11.71□□□□□ -0.53
XRN1-213ENST00000489241 SEC24BO95487 1268 aa11.69□□□□□ -0.54
XRN1-213ENST00000489241 TRIM41Q8WV44 630 aa11.67□□□□□ -0.54
XRN1-213ENST00000489241 COLQQ9Y215 455 aaPredicted RBP11.67□□□□□ -0.54
XRN1-213ENST00000489241 POTEJP0CG39 1038 aa11.66□□□□□ -0.54
XRN1-213ENST00000489241 MAMSTRQ6ZN01 415 aa11.66□□□□□ -0.54
XRN1-213ENST00000489241 PSEN1P49768 467 aa11.62□□□□□ -0.55
XRN1-213ENST00000489241 PDAP1Q13442 181 aaKnown RBP11.62□□□□□ -0.55
XRN1-213ENST00000489241 PLCG2P16885 1265 aa11.61□□□□□ -0.55
XRN1-213ENST00000489241 SCUBE2Q9NQ36 999 aa11.61□□□□□ -0.55
XRN1-213ENST00000489241 IRX5P78411 483 aaPredicted RBP11.6□□□□□ -0.55
XRN1-213ENST00000489241 GOLGA2Q08379 1002 aa11.58□□□□□ -0.56
XRN1-213ENST00000489241 OCEL1Q9H607 264 aa11.55□□□□□ -0.56
XRN1-213ENST00000489241 MKRN3Q13064 507 aaKnown RBP11.54□□□□□ -0.56
XRN1-213ENST00000489241 RIOK3O14730 519 aaKnown RBP11.48□□□□□ -0.57
XRN1-213ENST00000489241 RNF25Q96BH1 459 aaPredicted RBP11.48□□□□□ -0.57
XRN1-213ENST00000489241 CABP2Q9NPB3 220 aa11.48□□□□□ -0.57
XRN1-213ENST00000489241 PDCD7Q8N8D1 485 aaKnown RBP11.47□□□□□ -0.57
XRN1-213ENST00000489241 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.46□□□□□ -0.579e-8■■■■■ 27.4
XRN1-213ENST00000489241 VGFO15240 615 aaPredicted RBP11.43□□□□□ -0.58
XRN1-213ENST00000489241 ILDR1Q86SU0 546 aaPredicted RBP11.43□□□□□ -0.58
XRN1-213ENST00000489241 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.39□□□□□ -0.59
XRN1-213ENST00000489241 ECM2O94769 699 aaPredicted RBP11.39□□□□□ -0.59
XRN1-213ENST00000489241 SLAIN1Q8ND83 568 aa11.39□□□□□ -0.59
XRN1-213ENST00000489241 L3MBTL3Q96JM7 780 aaPredicted RBP11.39□□□□□ -0.59
XRN1-213ENST00000489241 ZFP91Q96JP5 570 aaPredicted RBP11.39□□□□□ -0.59
XRN1-213ENST00000489241 TAOK2Q9UL54 1235 aa11.37□□□□□ -0.59
XRN1-213ENST00000489241 PKD2Q13563 968 aa11.36□□□□□ -0.59
XRN1-213ENST00000489241 EFCAB3Q8N7B9 438 aa11.36□□□□□ -0.59
XRN1-213ENST00000489241 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.36□□□□□ -0.59
XRN1-213ENST00000489241 C3orf67Q6ZVT6 689 aa11.35□□□□□ -0.59
XRN1-213ENST00000489241 POTEMA6NI47 508 aa11.31□□□□□ -0.6
XRN1-213ENST00000489241 LCE2DQ5TA82 110 aaPredicted RBP11.31□□□□□ -0.6
XRN1-213ENST00000489241 DPY19L2Q6NUT2 758 aa11.31□□□□□ -0.6
XRN1-213ENST00000489241 FAM163AQ96GL9 167 aaPredicted RBP11.31□□□□□ -0.6
XRN1-213ENST00000489241 G3V3G9 751 aa11.29□□□□□ -0.6
XRN1-213ENST00000489241 SOX12O15370 315 aa11.29□□□□□ -0.6
XRN1-213ENST00000489241 POTEGQ6S5H5 508 aa11.29□□□□□ -0.6
XRN1-213ENST00000489241 BCL11BQ9C0K0 894 aaPredicted RBP11.29□□□□□ -0.6
XRN1-213ENST00000489241 BOLA1Q9Y3E2 137 aa11.29□□□□□ -0.6
XRN1-213ENST00000489241 RGL2O15211 777 aa11.28□□□□□ -0.6
XRN1-213ENST00000489241 STK24Q9Y6E0 443 aa11.25□□□□□ -0.61
XRN1-213ENST00000489241 STK25O00506 426 aa11.24□□□□□ -0.61
XRN1-213ENST00000489241 SNPHO15079 494 aa11.23□□□□□ -0.61
XRN1-213ENST00000489241 PHF8Q9UPP1 1060 aa11.23□□□□□ -0.61
XRN1-213ENST00000489241 MS4A4AQ96JQ5 239 aa11.21□□□□□ -0.61
XRN1-213ENST00000489241 TMEM121BQ9BXQ6 578 aaPredicted RBP11.21□□□□□ -0.61
XRN1-213ENST00000489241 ST18O60284 1047 aa11.19□□□□□ -0.62
XRN1-213ENST00000489241 NLRP6P59044 892 aa11.18□□□□□ -0.62
XRN1-213ENST00000489241 AMER1Q5JTC6 1135 aaPredicted RBP11.18□□□□□ -0.62
XRN1-213ENST00000489241 MICALL2Q8IY33 904 aa11.17□□□□□ -0.62
XRN1-213ENST00000489241 FBXO22Q8NEZ5 403 aa11.16□□□□□ -0.62
XRN1-213ENST00000489241 MFRPQ9BY79 579 aa11.14□□□□□ -0.63
XRN1-213ENST00000489241 PCDH10Q9P2E7 1040 aa11.14□□□□□ -0.63
XRN1-213ENST00000489241 HS6ST3Q8IZP7 471 aa11.07□□□□□ -0.64
XRN1-213ENST00000489241 TMEM92Q6UXU6 159 aa11.06□□□□□ -0.64
XRN1-213ENST00000489241 RTN4Q9NQC3 1192 aaKnown RBP11.06□□□□□ -0.64
XRN1-213ENST00000489241 HOXB3P14651 431 aaPredicted RBP11.04□□□□□ -0.64
XRN1-213ENST00000489241 PLSCR2Q9NRY7 297 aa11.03□□□□□ -0.64
XRN1-213ENST00000489241 DOK7Q18PE1 504 aa11.02□□□□□ -0.65
XRN1-213ENST00000489241 MARVELD3Q96A59 401 aa11.02□□□□□ -0.65
XRN1-213ENST00000489241 CDAN1Q8IWY9 1227 aa11.01□□□□□ -0.65
XRN1-213ENST00000489241 CHGAP10645 457 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms