RNA–Protein interactions for RNA: ENST00000487890.5

GPNMB-212, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-212ENST00000487890 NBR1Q14596 966 aa6.91□□□□□ -1.3
GPNMB-212ENST00000487890 NKX1-1Q15270 411 aaPredicted RBP6.91□□□□□ -1.3
GPNMB-212ENST00000487890 NUBP1P53384 320 aa6.9□□□□□ -1.3
GPNMB-212ENST00000487890 GSE1Q14687 1217 aa6.89□□□□□ -1.31
GPNMB-212ENST00000487890 GTPBP6O43824 516 aaPredicted RBP6.88□□□□□ -1.31
GPNMB-212ENST00000487890 DCAF8Q5TAQ9 597 aa6.87□□□□□ -1.31
GPNMB-212ENST00000487890 RIOK3O14730 519 aaKnown RBP6.86□□□□□ -1.31
GPNMB-212ENST00000487890 STK25O00506 426 aa6.81□□□□□ -1.32
GPNMB-212ENST00000487890 VGFO15240 615 aaPredicted RBP6.79□□□□□ -1.32
GPNMB-212ENST00000487890 CREBZFQ9NS37 354 aa6.79□□□□□ -1.32
GPNMB-212ENST00000487890 CHRM1P11229 460 aaPredicted RBP6.78□□□□□ -1.32
GPNMB-212ENST00000487890 MNX1P50219 401 aaPredicted RBP6.78□□□□□ -1.32
GPNMB-212ENST00000487890 FAM212AQ96EL1 285 aa6.77□□□□□ -1.33
GPNMB-212ENST00000487890 RASEFQ8IZ41 740 aa6.76□□□□□ -1.33
GPNMB-212ENST00000487890 SPDYE1Q8NFV5 336 aaPredicted RBP6.76□□□□□ -1.33
GPNMB-212ENST00000487890 SGIP1Q9BQI5 828 aa6.76□□□□□ -1.33
GPNMB-212ENST00000487890 BCL11BQ9C0K0 894 aaPredicted RBP6.76□□□□□ -1.33
GPNMB-212ENST00000487890 TIMELESSQ9UNS1 1208 aa6.76□□□□□ -1.33
GPNMB-212ENST00000487890 STK24Q9Y6E0 443 aa6.76□□□□□ -1.33
GPNMB-212ENST00000487890 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.75□□□□□ -1.33
GPNMB-212ENST00000487890 TULP1O00294 542 aaPredicted RBP6.75□□□□□ -1.33
GPNMB-212ENST00000487890 ZFP91Q96JP5 570 aaPredicted RBP6.75□□□□□ -1.33
GPNMB-212ENST00000487890 CLEC11AQ9Y240 323 aa6.74□□□□□ -1.33
GPNMB-212ENST00000487890 GTF3C3Q9Y5Q9 886 aa6.74□□□□□ -1.33
GPNMB-212ENST00000487890 PRR29P0C7W0 189 aa6.73□□□□□ -1.33
GPNMB-212ENST00000487890 PYGBP11216 843 aa6.72□□□□□ -1.33
GPNMB-212ENST00000487890 AKT1S1Q96B36 256 aa6.71□□□□□ -1.34
GPNMB-212ENST00000487890 RYDENQ9NUL5 291 aaKnown RBP6.69□□□□□ -1.34
GPNMB-212ENST00000487890 CADPS2Q86UW7 1296 aa6.68□□□□□ -1.34
GPNMB-212ENST00000487890 REM2Q8IYK8 340 aaPredicted RBP6.68□□□□□ -1.34
GPNMB-212ENST00000487890 TMEM132AQ24JP5 1023 aa6.66□□□□□ -1.34
GPNMB-212ENST00000487890 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.64□□□□□ -1.35
GPNMB-212ENST00000487890 P3H3Q8IVL6 736 aa6.64□□□□□ -1.35
GPNMB-212ENST00000487890 KCNV2Q8TDN2 545 aa6.64□□□□□ -1.35
GPNMB-212ENST00000487890 RBM42Q9BTD8 480 aaKnown RBP6.64□□□□□ -1.35
GPNMB-212ENST00000487890 LMOD2Q6P5Q4 547 aa6.62□□□□□ -1.35
GPNMB-212ENST00000487890 WDR70Q9NW82 654 aa6.62□□□□□ -1.35
GPNMB-212ENST00000487890 PITPNM1O00562 1244 aa6.59□□□□□ -1.35
GPNMB-212ENST00000487890 TSPYL2Q9H2G4 693 aaPredicted RBP6.59□□□□□ -1.35
GPNMB-212ENST00000487890 PCDHB8Q9UN66 801 aa6.59□□□□□ -1.35
GPNMB-212ENST00000487890 PCDHB13Q9Y5F0 798 aa6.59□□□□□ -1.35
GPNMB-212ENST00000487890 PDAP1Q13442 181 aaKnown RBP6.58□□□□□ -1.36
GPNMB-212ENST00000487890 ZNF467Q7Z7K2 595 aaPredicted RBP6.58□□□□□ -1.36
GPNMB-212ENST00000487890 ERICH6Q7L0X2 663 aa6.57□□□□□ -1.36
GPNMB-212ENST00000487890 MFRPQ9BY79 579 aa6.57□□□□□ -1.36
GPNMB-212ENST00000487890 CHADLQ6NUI6 762 aa6.56□□□□□ -1.36
GPNMB-212ENST00000487890 PPP1R37O75864 691 aa6.55□□□□□ -1.36
GPNMB-212ENST00000487890 BRPF1P55201 1214 aaPredicted RBP6.55□□□□□ -1.36
GPNMB-212ENST00000487890 PSEN1P49768 467 aa6.54□□□□□ -1.36
GPNMB-212ENST00000487890 C14orf37Q86TY3 774 aa6.53□□□□□ -1.36
GPNMB-212ENST00000487890 ZC3H15Q8WU90 426 aaKnown RBP6.53□□□□□ -1.36
GPNMB-212ENST00000487890 ARHGEF1Q92888 912 aaKnown RBP6.52□□□□□ -1.37
GPNMB-212ENST00000487890 ARXQ96QS3 562 aa6.52□□□□□ -1.37
GPNMB-212ENST00000487890 ZNF579Q8NAF0 562 aaKnown RBP6.51□□□□□ -1.37
GPNMB-212ENST00000487890 FARP1Q9Y4F1 1045 aaPredicted RBP6.51□□□□□ -1.37
GPNMB-212ENST00000487890 CCDC61Q9Y6R9 512 aa6.51□□□□□ -1.37
GPNMB-212ENST00000487890 SEMA3EO15041 775 aa6.5□□□□□ -1.37
GPNMB-212ENST00000487890 E2F4Q16254 413 aa6.5□□□□□ -1.37
GPNMB-212ENST00000487890 FBXO22Q8NEZ5 403 aa6.5□□□□□ -1.37
GPNMB-212ENST00000487890 TESPA1A2RU30 521 aaPredicted RBP6.49□□□□□ -1.37
GPNMB-212ENST00000487890 EFCAB3Q8N7B9 438 aa6.49□□□□□ -1.37
GPNMB-212ENST00000487890 SLC24A3Q9HC58 644 aa6.49□□□□□ -1.37
GPNMB-212ENST00000487890 PHF8Q9UPP1 1060 aa6.48□□□□□ -1.37
GPNMB-212ENST00000487890 NLRP6P59044 892 aa6.47□□□□□ -1.37
GPNMB-212ENST00000487890 IFNL1Q8IU54 200 aa6.47□□□□□ -1.37
GPNMB-212ENST00000487890 NEUROD2Q15784 382 aa6.46□□□□□ -1.38
GPNMB-212ENST00000487890 CABP2Q9NPB3 220 aa6.46□□□□□ -1.38
GPNMB-212ENST00000487890 NCKAP5LQ9HCH0 1330 aa6.45□□□□□ -1.38
GPNMB-212ENST00000487890 SOX12O15370 315 aa6.44□□□□□ -1.38
GPNMB-212ENST00000487890 MAP3K13O43283 966 aa6.44□□□□□ -1.38
GPNMB-212ENST00000487890 ZMYND10O75800 440 aa6.43□□□□□ -1.38
GPNMB-212ENST00000487890 LARP6Q9BRS8 491 aaKnown RBP6.43□□□□□ -1.38
GPNMB-212ENST00000487890 PRKAR2AP13861 404 aaKnown RBP6.42□□□□□ -1.38
GPNMB-212ENST00000487890 KIF12Q96FN5 646 aa6.42□□□□□ -1.38
GPNMB-212ENST00000487890 PDE4AP27815 886 aa6.41□□□□□ -1.38
GPNMB-212ENST00000487890 MS4A4AQ96JQ5 239 aa6.41□□□□□ -1.38
GPNMB-212ENST00000487890 SUPT5HO00267 1087 aaKnown RBP6.4□□□□□ -1.38
GPNMB-212ENST00000487890 MFSD10Q14728 455 aa6.4□□□□□ -1.38
GPNMB-212ENST00000487890 HOMEZQ8IX15 550 aa6.4□□□□□ -1.38
GPNMB-212ENST00000487890 CRISPLD2Q9H0B8 497 aa6.39□□□□□ -1.39
GPNMB-212ENST00000487890 SMYD5Q6GMV2 418 aa6.38□□□□□ -1.39
GPNMB-212ENST00000487890 BARGINQ6ZT62 677 aa6.38□□□□□ -1.39
GPNMB-212ENST00000487890 DAXXQ9UER7 740 aaPredicted RBP6.38□□□□□ -1.39
GPNMB-212ENST00000487890 ARIH1Q9Y4X5 557 aaPredicted RBP6.38□□□□□ -1.39
GPNMB-212ENST00000487890 FXR2P51116 673 aaKnown RBP eCLIP6.37□□□□□ -1.39
GPNMB-212ENST00000487890 PAK3O75914 559 aaPredicted RBP6.36□□□□□ -1.39
GPNMB-212ENST00000487890 CAMK2BQ13554 666 aa6.36□□□□□ -1.39
GPNMB-212ENST00000487890 DDX27Q96GQ7 796 aaKnown RBP6.36□□□□□ -1.39
GPNMB-212ENST00000487890 RBM26Q5T8P6 1007 aaKnown RBP6.35□□□□□ -1.39
GPNMB-212ENST00000487890 MLLT3P42568 568 aaPredicted RBP6.34□□□□□ -1.39
GPNMB-212ENST00000487890 GPBP1L1Q9HC44 474 aaPredicted RBP6.34□□□□□ -1.39
GPNMB-212ENST00000487890 CCDC180Q9P1Z9 1646 aa6.34□□□□□ -1.39
GPNMB-212ENST00000487890 AK7Q96M32 723 aa6.33□□□□□ -1.4
GPNMB-212ENST00000487890 ABCC9O60706 1549 aa6.32□□□□□ -1.4
GPNMB-212ENST00000487890 PHF12Q96QT6 1004 aa6.32□□□□□ -1.4
GPNMB-212ENST00000487890 IL27Q8NEV9 243 aa6.31□□□□□ -1.4
GPNMB-212ENST00000487890 ZRANB1Q9UGI0 708 aa6.31□□□□□ -1.4
GPNMB-212ENST00000487890 GPIHBP1Q8IV16 184 aa6.3□□□□□ -1.4
GPNMB-212ENST00000487890 KRI1Q8N9T8 703 aaKnown RBP6.3□□□□□ -1.4
GPNMB-212ENST00000487890 TMEM106CQ9BVX2 250 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms