RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 NUBP1P53384 320 aa14.97□□□□□ -0.01
SMC4-219ENST00000487747 VASPP50552 380 aaPredicted RBP14.94□□□□□ -0.02
SMC4-219ENST00000487747 DCBLD2Q96PD2 775 aa14.94□□□□□ -0.02
SMC4-219ENST00000487747 ZBTB47Q9UFB7 747 aaPredicted RBP14.93□□□□□ -0.02
SMC4-219ENST00000487747 MS4A3Q96HJ5 214 aa14.92□□□□□ -0.02
SMC4-219ENST00000487747 KIF12Q96FN5 646 aa14.88□□□□□ -0.03
SMC4-219ENST00000487747 MAP3K13O43283 966 aa14.83□□□□□ -0.04
SMC4-219ENST00000487747 PELP1Q8IZL8 1130 aaKnown RBP14.79□□□□□ -0.04
SMC4-219ENST00000487747 KLHL34Q8N239 644 aa14.79□□□□□ -0.04
SMC4-219ENST00000487747 TRPC6Q9Y210 931 aa14.79□□□□□ -0.04
SMC4-219ENST00000487747 FAM212AQ96EL1 285 aa14.77□□□□□ -0.05
SMC4-219ENST00000487747 IFNLR1Q8IU57 520 aaPredicted RBP14.76□□□□□ -0.05
SMC4-219ENST00000487747 DCAF8Q5TAQ9 597 aa14.73□□□□□ -0.05
SMC4-219ENST00000487747 ATMINO43313 823 aaPredicted RBP14.72□□□□□ -0.05
SMC4-219ENST00000487747 ASTLQ6HA08 431 aaPredicted RBP14.72□□□□□ -0.05
SMC4-219ENST00000487747 PLSCR2Q9NRY7 297 aa14.72□□□□□ -0.05
SMC4-219ENST00000487747 PCDHB13Q9Y5F0 798 aa14.68□□□□□ -0.06
SMC4-219ENST00000487747 PYGBP11216 843 aa14.66□□□□□ -0.06
SMC4-219ENST00000487747 ATN1P54259 1190 aaPredicted RBP14.66□□□□□ -0.06
SMC4-219ENST00000487747 BMP2KQ9NSY1 1161 aaPredicted RBP14.66□□□□□ -0.06
SMC4-219ENST00000487747 IFNL1Q8IU54 200 aa14.65□□□□□ -0.06
SMC4-219ENST00000487747 POTEB2H3BUK9 544 aa14.62□□□□□ -0.07
SMC4-219ENST00000487747 SGIP1Q9BQI5 828 aa14.61□□□□□ -0.07
SMC4-219ENST00000487747 TIE1P35590 1138 aa14.58□□□□□ -0.08
SMC4-219ENST00000487747 SPOCK2Q92563 424 aa14.58□□□□□ -0.08
SMC4-219ENST00000487747 TTLL13PA6NNM8 815 aa14.57□□□□□ -0.08
SMC4-219ENST00000487747 METRNQ9UJH8 293 aa14.57□□□□□ -0.08
SMC4-219ENST00000487747 GSE1Q14687 1217 aa14.55□□□□□ -0.08
SMC4-219ENST00000487747 PCDHB8Q9UN66 801 aa14.54□□□□□ -0.08
SMC4-219ENST00000487747 SLC39A7Q92504 469 aa14.53□□□□□ -0.08
SMC4-219ENST00000487747 C7P10643 843 aa14.51□□□□□ -0.09
SMC4-219ENST00000487747 POTEFA5A3E0 1075 aa14.49□□□□□ -0.09
SMC4-219ENST00000487747 CIZ1Q9ULV3 898 aaPredicted RBP14.48□□□□□ -0.09
SMC4-219ENST00000487747 POTEJP0CG39 1038 aa14.47□□□□□ -0.09
SMC4-219ENST00000487747 OTUD5Q96G74 571 aa14.47□□□□□ -0.09
SMC4-219ENST00000487747 TMEM106CQ9BVX2 250 aa14.47□□□□□ -0.09
SMC4-219ENST00000487747 TRIM35Q9UPQ4 493 aa14.47□□□□□ -0.09
SMC4-219ENST00000487747 CHRM1P11229 460 aaPredicted RBP14.44□□□□□ -0.1
SMC4-219ENST00000487747 COLQQ9Y215 455 aaPredicted RBP14.42□□□□□ -0.1
SMC4-219ENST00000487747 ZNF467Q7Z7K2 595 aaPredicted RBP14.35□□□□□ -0.11
SMC4-219ENST00000487747 POTEMA6NI47 508 aa14.33□□□□□ -0.12
SMC4-219ENST00000487747 SEC24BO95487 1268 aa14.32□□□□□ -0.12
SMC4-219ENST00000487747 IER5LQ5T953 404 aa14.31□□□□□ -0.12
SMC4-219ENST00000487747 PSEN1P49768 467 aa14.28□□□□□ -0.12
SMC4-219ENST00000487747 POTEGQ6S5H5 508 aa14.27□□□□□ -0.13
SMC4-219ENST00000487747 IRX5P78411 483 aaPredicted RBP14.26□□□□□ -0.13
SMC4-219ENST00000487747 PDAP1Q13442 181 aaKnown RBP14.22□□□□□ -0.13
SMC4-219ENST00000487747 PLCG2P16885 1265 aa14.19□□□□□ -0.14
SMC4-219ENST00000487747 RNF25Q96BH1 459 aaPredicted RBP14.19□□□□□ -0.14
SMC4-219ENST00000487747 MAMSTRQ6ZN01 415 aa14.18□□□□□ -0.14
SMC4-219ENST00000487747 TRIM41Q8WV44 630 aa14.18□□□□□ -0.14
SMC4-219ENST00000487747 OCEL1Q9H607 264 aa14.16□□□□□ -0.14
SMC4-219ENST00000487747 SCUBE2Q9NQ36 999 aa14.15□□□□□ -0.14
SMC4-219ENST00000487747 PDCD7Q8N8D1 485 aaKnown RBP14.13□□□□□ -0.15
SMC4-219ENST00000487747 CABP2Q9NPB3 220 aa14.13□□□□□ -0.15
SMC4-219ENST00000487747 GOLGA2Q08379 1002 aa14.12□□□□□ -0.15
SMC4-219ENST00000487747 MKRN3Q13064 507 aaKnown RBP14.12□□□□□ -0.15
SMC4-219ENST00000487747 RIOK3O14730 519 aaKnown RBP14.08□□□□□ -0.16
SMC4-219ENST00000487747 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.07□□□□□ -0.165e-7■■■■■ 34.9
SMC4-219ENST00000487747 PKD2Q13563 968 aa14.06□□□□□ -0.16
SMC4-219ENST00000487747 PCDH10Q9P2E7 1040 aa14.06□□□□□ -0.16
SMC4-219ENST00000487747 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.03□□□□□ -0.16
SMC4-219ENST00000487747 DPY19L2Q6NUT2 758 aa14.03□□□□□ -0.16
SMC4-219ENST00000487747 ILDR1Q86SU0 546 aaPredicted RBP14.03□□□□□ -0.16
SMC4-219ENST00000487747 ZFP91Q96JP5 570 aaPredicted RBP14.03□□□□□ -0.16
SMC4-219ENST00000487747 LCE2DQ5TA82 110 aaPredicted RBP14.02□□□□□ -0.17
SMC4-219ENST00000487747 EFCAB3Q8N7B9 438 aa14.01□□□□□ -0.17
SMC4-219ENST00000487747 ECM2O94769 699 aaPredicted RBP14□□□□□ -0.17
SMC4-219ENST00000487747 SLAIN1Q8ND83 568 aa13.99□□□□□ -0.17
SMC4-219ENST00000487747 VGFO15240 615 aaPredicted RBP13.98□□□□□ -0.17
SMC4-219ENST00000487747 RGL2O15211 777 aa13.95□□□□□ -0.18
SMC4-219ENST00000487747 FAM163AQ96GL9 167 aaPredicted RBP13.95□□□□□ -0.18
SMC4-219ENST00000487747 L3MBTL3Q96JM7 780 aaPredicted RBP13.91□□□□□ -0.18
SMC4-219ENST00000487747 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.9□□□□□ -0.18
SMC4-219ENST00000487747 BCL11BQ9C0K0 894 aaPredicted RBP13.88□□□□□ -0.19
SMC4-219ENST00000487747 PHF8Q9UPP1 1060 aa13.85□□□□□ -0.19
SMC4-219ENST00000487747 C3orf67Q6ZVT6 689 aa13.84□□□□□ -0.19
SMC4-219ENST00000487747 MS4A4AQ96JQ5 239 aa13.84□□□□□ -0.19
SMC4-219ENST00000487747 BOLA1Q9Y3E2 137 aa13.84□□□□□ -0.19
SMC4-219ENST00000487747 STK24Q9Y6E0 443 aa13.84□□□□□ -0.19
SMC4-219ENST00000487747 STK25O00506 426 aa13.82□□□□□ -0.2
SMC4-219ENST00000487747 SOX12O15370 315 aa13.82□□□□□ -0.2
SMC4-219ENST00000487747 ST18O60284 1047 aa13.78□□□□□ -0.2
SMC4-219ENST00000487747 TAOK2Q9UL54 1235 aa13.78□□□□□ -0.2
SMC4-219ENST00000487747 TMEM121BQ9BXQ6 578 aaPredicted RBP13.77□□□□□ -0.21
SMC4-219ENST00000487747 G3V3G9 751 aa13.74□□□□□ -0.21
SMC4-219ENST00000487747 FBXO22Q8NEZ5 403 aa13.74□□□□□ -0.21
SMC4-219ENST00000487747 MFRPQ9BY79 579 aa13.74□□□□□ -0.21
SMC4-219ENST00000487747 MICALL2Q8IY33 904 aa13.72□□□□□ -0.21
SMC4-219ENST00000487747 NLRP6P59044 892 aa13.69□□□□□ -0.22
SMC4-219ENST00000487747 TMEM92Q6UXU6 159 aa13.68□□□□□ -0.22
SMC4-219ENST00000487747 CDAN1Q8IWY9 1227 aa13.66□□□□□ -0.22
SMC4-219ENST00000487747 SNPHO15079 494 aa13.65□□□□□ -0.22
SMC4-219ENST00000487747 MARVELD3Q96A59 401 aa13.62□□□□□ -0.23
SMC4-219ENST00000487747 HOXB3P14651 431 aaPredicted RBP13.6□□□□□ -0.23
SMC4-219ENST00000487747 HS6ST3Q8IZP7 471 aa13.58□□□□□ -0.24
SMC4-219ENST00000487747 CHGAP10645 457 aaKnown RBP13.57□□□□□ -0.24
SMC4-219ENST00000487747 PPP1R37O75864 691 aa13.56□□□□□ -0.24
SMC4-219ENST00000487747 NKX1-1Q15270 411 aaPredicted RBP13.5□□□□□ -0.25
SMC4-219ENST00000487747 POTEB3A0JP26 581 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms