RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 CCDC61Q9Y6R9 512 aa14.24□□□□□ -0.13
SMC4-218ENST00000486711 VASPP50552 380 aaPredicted RBP14.18□□□□□ -0.14
SMC4-218ENST00000486711 NUBP1P53384 320 aa14.18□□□□□ -0.14
SMC4-218ENST00000486711 MS4A3Q96HJ5 214 aa14.17□□□□□ -0.14
SMC4-218ENST00000486711 KIF12Q96FN5 646 aa14.13□□□□□ -0.15
SMC4-218ENST00000486711 FAM212AQ96EL1 285 aa14.12□□□□□ -0.15
SMC4-218ENST00000486711 LHX8Q68G74 356 aa14.09□□□□□ -0.15
SMC4-218ENST00000486711 KLHL34Q8N239 644 aa14.07□□□□□ -0.16
SMC4-218ENST00000486711 MAP3K13O43283 966 aa14.06□□□□□ -0.16
SMC4-218ENST00000486711 ASTLQ6HA08 431 aaPredicted RBP14.02□□□□□ -0.17
SMC4-218ENST00000486711 SGIP1Q9BQI5 828 aa14.01□□□□□ -0.17
SMC4-218ENST00000486711 DCAF8Q5TAQ9 597 aa14□□□□□ -0.17
SMC4-218ENST00000486711 ATMINO43313 823 aaPredicted RBP13.99□□□□□ -0.17
SMC4-218ENST00000486711 PCDHB13Q9Y5F0 798 aa13.98□□□□□ -0.17
SMC4-218ENST00000486711 PELP1Q8IZL8 1130 aaKnown RBP13.96□□□□□ -0.17
SMC4-218ENST00000486711 TIE1P35590 1138 aa13.94□□□□□ -0.18
SMC4-218ENST00000486711 SLC39A7Q92504 469 aa13.93□□□□□ -0.18
SMC4-218ENST00000486711 TRPC6Q9Y210 931 aa13.93□□□□□ -0.18
SMC4-218ENST00000486711 GSE1Q14687 1217 aa13.92□□□□□ -0.18
SMC4-218ENST00000486711 BMP2KQ9NSY1 1161 aaPredicted RBP13.92□□□□□ -0.18
SMC4-218ENST00000486711 ATN1P54259 1190 aaPredicted RBP13.91□□□□□ -0.18
SMC4-218ENST00000486711 IFNLR1Q8IU57 520 aaPredicted RBP13.91□□□□□ -0.18
SMC4-218ENST00000486711 C7P10643 843 aa13.89□□□□□ -0.19
SMC4-218ENST00000486711 METRNQ9UJH8 293 aa13.89□□□□□ -0.19
SMC4-218ENST00000486711 PYGBP11216 843 aa13.88□□□□□ -0.19
SMC4-218ENST00000486711 IFNL1Q8IU54 200 aa13.88□□□□□ -0.19
SMC4-218ENST00000486711 SPOCK2Q92563 424 aa13.88□□□□□ -0.19
SMC4-218ENST00000486711 TTLL13PA6NNM8 815 aa13.85□□□□□ -0.19
SMC4-218ENST00000486711 POTEB2H3BUK9 544 aa13.78□□□□□ -0.2
SMC4-218ENST00000486711 TMEM106CQ9BVX2 250 aa13.77□□□□□ -0.21
SMC4-218ENST00000486711 CHRM1P11229 460 aaPredicted RBP13.76□□□□□ -0.21
SMC4-218ENST00000486711 TRIM35Q9UPQ4 493 aa13.76□□□□□ -0.21
SMC4-218ENST00000486711 CIZ1Q9ULV3 898 aaPredicted RBP13.75□□□□□ -0.21
SMC4-218ENST00000486711 ZNF467Q7Z7K2 595 aaPredicted RBP13.74□□□□□ -0.21
SMC4-218ENST00000486711 PCDHB8Q9UN66 801 aa13.74□□□□□ -0.21
SMC4-218ENST00000486711 IER5LQ5T953 404 aa13.73□□□□□ -0.21
SMC4-218ENST00000486711 OTUD5Q96G74 571 aa13.7□□□□□ -0.22
SMC4-218ENST00000486711 SEC24BO95487 1268 aa13.69□□□□□ -0.22
SMC4-218ENST00000486711 POTEFA5A3E0 1075 aa13.67□□□□□ -0.22
SMC4-218ENST00000486711 MAMSTRQ6ZN01 415 aa13.66□□□□□ -0.22
SMC4-218ENST00000486711 TRIM41Q8WV44 630 aa13.63□□□□□ -0.23
SMC4-218ENST00000486711 COLQQ9Y215 455 aaPredicted RBP13.63□□□□□ -0.23
SMC4-218ENST00000486711 POTEJP0CG39 1038 aa13.62□□□□□ -0.23
SMC4-218ENST00000486711 SCUBE2Q9NQ36 999 aa13.6□□□□□ -0.23
SMC4-218ENST00000486711 PLCG2P16885 1265 aa13.58□□□□□ -0.24
SMC4-218ENST00000486711 PSEN1P49768 467 aa13.58□□□□□ -0.24
SMC4-218ENST00000486711 PDAP1Q13442 181 aaKnown RBP13.56□□□□□ -0.24
SMC4-218ENST00000486711 IRX5P78411 483 aaPredicted RBP13.55□□□□□ -0.24
SMC4-218ENST00000486711 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
SMC4-218ENST00000486711 OCEL1Q9H607 264 aa13.51□□□□□ -0.25
SMC4-218ENST00000486711 MKRN3Q13064 507 aaKnown RBP13.5□□□□□ -0.25
SMC4-218ENST00000486711 CABP2Q9NPB3 220 aa13.41□□□□□ -0.26
SMC4-218ENST00000486711 RIOK3O14730 519 aaKnown RBP13.4□□□□□ -0.26
SMC4-218ENST00000486711 PDCD7Q8N8D1 485 aaKnown RBP13.39□□□□□ -0.27
SMC4-218ENST00000486711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.39□□□□□ -0.275e-7■■■□□ 15.9
SMC4-218ENST00000486711 RNF25Q96BH1 459 aaPredicted RBP13.37□□□□□ -0.27
SMC4-218ENST00000486711 VGFO15240 615 aaPredicted RBP13.34□□□□□ -0.27
SMC4-218ENST00000486711 SLAIN1Q8ND83 568 aa13.34□□□□□ -0.27
SMC4-218ENST00000486711 L3MBTL3Q96JM7 780 aaPredicted RBP13.33□□□□□ -0.28
SMC4-218ENST00000486711 ILDR1Q86SU0 546 aaPredicted RBP13.32□□□□□ -0.28
SMC4-218ENST00000486711 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.31□□□□□ -0.28
SMC4-218ENST00000486711 TAOK2Q9UL54 1235 aa13.3□□□□□ -0.28
SMC4-218ENST00000486711 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.29□□□□□ -0.28
SMC4-218ENST00000486711 ZFP91Q96JP5 570 aaPredicted RBP13.29□□□□□ -0.28
SMC4-218ENST00000486711 ECM2O94769 699 aaPredicted RBP13.28□□□□□ -0.28
SMC4-218ENST00000486711 C3orf67Q6ZVT6 689 aa13.27□□□□□ -0.29
SMC4-218ENST00000486711 EFCAB3Q8N7B9 438 aa13.27□□□□□ -0.29
SMC4-218ENST00000486711 FAM163AQ96GL9 167 aaPredicted RBP13.26□□□□□ -0.29
SMC4-218ENST00000486711 POTEMA6NI47 508 aa13.24□□□□□ -0.29
SMC4-218ENST00000486711 PKD2Q13563 968 aa13.23□□□□□ -0.29
SMC4-218ENST00000486711 G3V3G9 751 aa13.22□□□□□ -0.29
SMC4-218ENST00000486711 DPY19L2Q6NUT2 758 aa13.22□□□□□ -0.29
SMC4-218ENST00000486711 POTEGQ6S5H5 508 aa13.22□□□□□ -0.29
SMC4-218ENST00000486711 LCE2DQ5TA82 110 aaPredicted RBP13.21□□□□□ -0.29
SMC4-218ENST00000486711 SOX12O15370 315 aa13.19□□□□□ -0.3
SMC4-218ENST00000486711 BOLA1Q9Y3E2 137 aa13.18□□□□□ -0.3
SMC4-218ENST00000486711 BCL11BQ9C0K0 894 aaPredicted RBP13.16□□□□□ -0.3
SMC4-218ENST00000486711 SNPHO15079 494 aa13.15□□□□□ -0.3
SMC4-218ENST00000486711 RGL2O15211 777 aa13.14□□□□□ -0.31
SMC4-218ENST00000486711 STK24Q9Y6E0 443 aa13.14□□□□□ -0.31
SMC4-218ENST00000486711 STK25O00506 426 aa13.12□□□□□ -0.31
SMC4-218ENST00000486711 PHF8Q9UPP1 1060 aa13.11□□□□□ -0.31
SMC4-218ENST00000486711 ST18O60284 1047 aa13.09□□□□□ -0.31
SMC4-218ENST00000486711 TMEM121BQ9BXQ6 578 aaPredicted RBP13.08□□□□□ -0.32
SMC4-218ENST00000486711 NLRP6P59044 892 aa13.07□□□□□ -0.32
SMC4-218ENST00000486711 MS4A4AQ96JQ5 239 aa13.07□□□□□ -0.32
SMC4-218ENST00000486711 PCDH10Q9P2E7 1040 aa13.06□□□□□ -0.32
SMC4-218ENST00000486711 MICALL2Q8IY33 904 aa13.04□□□□□ -0.32
SMC4-218ENST00000486711 FBXO22Q8NEZ5 403 aa13.01□□□□□ -0.33
SMC4-218ENST00000486711 MFRPQ9BY79 579 aa12.99□□□□□ -0.33
SMC4-218ENST00000486711 PLSCR2Q9NRY7 297 aa12.95□□□□□ -0.34
SMC4-218ENST00000486711 TMEM92Q6UXU6 159 aa12.9□□□□□ -0.34
SMC4-218ENST00000486711 HS6ST3Q8IZP7 471 aa12.9□□□□□ -0.34
SMC4-218ENST00000486711 HOXB3P14651 431 aaPredicted RBP12.89□□□□□ -0.35
SMC4-218ENST00000486711 DOK7Q18PE1 504 aa12.89□□□□□ -0.35
SMC4-218ENST00000486711 CDAN1Q8IWY9 1227 aa12.89□□□□□ -0.35
SMC4-218ENST00000486711 MARVELD3Q96A59 401 aa12.89□□□□□ -0.35
SMC4-218ENST00000486711 EMP3P54852 163 aa12.86□□□□□ -0.35
SMC4-218ENST00000486711 ZNF710Q8N1W2 664 aa12.86□□□□□ -0.35
SMC4-218ENST00000486711 RIMBP2O15034 1052 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms