RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CCDC61Q9Y6R9 512 aa12.31□□□□□ -0.44
VPS41-213ENST00000485955 SPOCK2Q92563 424 aa12.3□□□□□ -0.44
VPS41-213ENST00000485955 DCAF8Q5TAQ9 597 aa12.27□□□□□ -0.45
VPS41-213ENST00000485955 FAM212AQ96EL1 285 aa12.26□□□□□ -0.45
VPS41-213ENST00000485955 GALR2O43603 387 aaPredicted RBP12.2□□□□□ -0.46
VPS41-213ENST00000485955 KIF12Q96FN5 646 aa12.2□□□□□ -0.46
VPS41-213ENST00000485955 CLCN6P51797 869 aa12.18□□□□□ -0.46
VPS41-213ENST00000485955 MAP3K13O43283 966 aa12.17□□□□□ -0.46
VPS41-213ENST00000485955 GSE1Q14687 1217 aa12.17□□□□□ -0.46
VPS41-213ENST00000485955 PYGBP11216 843 aa12.16□□□□□ -0.46
VPS41-213ENST00000485955 CIZ1Q9ULV3 898 aaPredicted RBP12.16□□□□□ -0.46
VPS41-213ENST00000485955 MS4A3Q96HJ5 214 aa12.15□□□□□ -0.46
VPS41-213ENST00000485955 POTEIP0CG38 1075 aa12.1□□□□□ -0.47
VPS41-213ENST00000485955 PCDHB13Q9Y5F0 798 aa12.08□□□□□ -0.48
VPS41-213ENST00000485955 TRPC6Q9Y210 931 aa12.07□□□□□ -0.48
VPS41-213ENST00000485955 CHRM1P11229 460 aaPredicted RBP12.06□□□□□ -0.48
VPS41-213ENST00000485955 IFNL1Q8IU54 200 aa12.06□□□□□ -0.48
VPS41-213ENST00000485955 SGIP1Q9BQI5 828 aa12.05□□□□□ -0.48
VPS41-213ENST00000485955 DCBLD2Q96PD2 775 aa12.03□□□□□ -0.48
VPS41-213ENST00000485955 PCDHB8Q9UN66 801 aa12.03□□□□□ -0.48
VPS41-213ENST00000485955 PKD2Q13563 968 aa11.99□□□□□ -0.49
VPS41-213ENST00000485955 ATMINO43313 823 aaPredicted RBP11.96□□□□□ -0.49
VPS41-213ENST00000485955 PELP1Q8IZL8 1130 aaKnown RBP11.96□□□□□ -0.49
VPS41-213ENST00000485955 BMP2KQ9NSY1 1161 aaPredicted RBP11.96□□□□□ -0.49
VPS41-213ENST00000485955 ASTLQ6HA08 431 aaPredicted RBP11.95□□□□□ -0.5
VPS41-213ENST00000485955 TRIM41Q8WV44 630 aa11.95□□□□□ -0.5
VPS41-213ENST00000485955 TIE1P35590 1138 aa11.93□□□□□ -0.5
VPS41-213ENST00000485955 ATN1P54259 1190 aaPredicted RBP11.93□□□□□ -0.5
VPS41-213ENST00000485955 ZNF467Q7Z7K2 595 aaPredicted RBP11.92□□□□□ -0.5
VPS41-213ENST00000485955 RNF25Q96BH1 459 aaPredicted RBP11.92□□□□□ -0.5
VPS41-213ENST00000485955 TTLL13PA6NNM8 815 aa11.91□□□□□ -0.5
VPS41-213ENST00000485955 ECM2O94769 699 aaPredicted RBP11.89□□□□□ -0.51
VPS41-213ENST00000485955 TMEM106CQ9BVX2 250 aa11.88□□□□□ -0.51
VPS41-213ENST00000485955 PSEN1P49768 467 aa11.84□□□□□ -0.51
VPS41-213ENST00000485955 RIOK3O14730 519 aaKnown RBP11.83□□□□□ -0.52
VPS41-213ENST00000485955 RGL2O15211 777 aa11.83□□□□□ -0.52
VPS41-213ENST00000485955 TRIM35Q9UPQ4 493 aa11.83□□□□□ -0.52
VPS41-213ENST00000485955 PDAP1Q13442 181 aaKnown RBP11.82□□□□□ -0.52
VPS41-213ENST00000485955 SLC39A7Q92504 469 aa11.77□□□□□ -0.53
VPS41-213ENST00000485955 METRNQ9UJH8 293 aa11.77□□□□□ -0.53
VPS41-213ENST00000485955 C7P10643 843 aa11.76□□□□□ -0.53
VPS41-213ENST00000485955 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.75□□□□□ -0.53
VPS41-213ENST00000485955 POTEFA5A3E0 1075 aa11.75□□□□□ -0.53
VPS41-213ENST00000485955 ZFP91Q96JP5 570 aaPredicted RBP11.75□□□□□ -0.53
VPS41-213ENST00000485955 VGFO15240 615 aaPredicted RBP11.74□□□□□ -0.53
VPS41-213ENST00000485955 POTEB2H3BUK9 544 aa11.72□□□□□ -0.53
VPS41-213ENST00000485955 COLQQ9Y215 455 aaPredicted RBP11.72□□□□□ -0.53
VPS41-213ENST00000485955 CABP2Q9NPB3 220 aa11.71□□□□□ -0.53
VPS41-213ENST00000485955 IER5LQ5T953 404 aa11.7□□□□□ -0.54
VPS41-213ENST00000485955 LHX8Q68G74 356 aa11.7□□□□□ -0.54
VPS41-213ENST00000485955 RTN4Q9NQC3 1192 aaKnown RBP11.7□□□□□ -0.54
VPS41-213ENST00000485955 GOLGA2Q08379 1002 aa11.67□□□□□ -0.54
VPS41-213ENST00000485955 SEC24BO95487 1268 aa11.66□□□□□ -0.54
VPS41-213ENST00000485955 IRX5P78411 483 aaPredicted RBP11.66□□□□□ -0.54
VPS41-213ENST00000485955 POTEJP0CG39 1038 aa11.65□□□□□ -0.54
VPS41-213ENST00000485955 BCL11BQ9C0K0 894 aaPredicted RBP11.65□□□□□ -0.54
VPS41-213ENST00000485955 MKRN3Q13064 507 aaKnown RBP11.64□□□□□ -0.55
VPS41-213ENST00000485955 AMER1Q5JTC6 1135 aaPredicted RBP11.64□□□□□ -0.55
VPS41-213ENST00000485955 EFCAB3Q8N7B9 438 aa11.64□□□□□ -0.55
VPS41-213ENST00000485955 TAOK2Q9UL54 1235 aa11.64□□□□□ -0.55
VPS41-213ENST00000485955 STK25O00506 426 aa11.63□□□□□ -0.55
VPS41-213ENST00000485955 STK24Q9Y6E0 443 aa11.62□□□□□ -0.55
VPS41-213ENST00000485955 OCEL1Q9H607 264 aa11.61□□□□□ -0.55
VPS41-213ENST00000485955 PLCG2P16885 1265 aa11.59□□□□□ -0.55
VPS41-213ENST00000485955 ILDR1Q86SU0 546 aaPredicted RBP11.59□□□□□ -0.55
VPS41-213ENST00000485955 PDCD7Q8N8D1 485 aaKnown RBP11.59□□□□□ -0.55
VPS41-213ENST00000485955 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.59□□□□□ -0.557e-9■■□□□ 12.6
VPS41-213ENST00000485955 CHGAP10645 457 aaKnown RBP11.55□□□□□ -0.56
VPS41-213ENST00000485955 DPY19L2Q6NUT2 758 aa11.55□□□□□ -0.56
VPS41-213ENST00000485955 OTUD5Q96G74 571 aa11.54□□□□□ -0.56
VPS41-213ENST00000485955 HS6ST3Q8IZP7 471 aa11.53□□□□□ -0.56
VPS41-213ENST00000485955 SOX12O15370 315 aa11.52□□□□□ -0.57
VPS41-213ENST00000485955 DCAF8L2P0C7V8 631 aa11.52□□□□□ -0.57
VPS41-213ENST00000485955 PHF8Q9UPP1 1060 aa11.52□□□□□ -0.57
VPS41-213ENST00000485955 MS4A4AQ96JQ5 239 aa11.49□□□□□ -0.57
VPS41-213ENST00000485955 MFRPQ9BY79 579 aa11.49□□□□□ -0.57
VPS41-213ENST00000485955 FBXO22Q8NEZ5 403 aa11.47□□□□□ -0.57
VPS41-213ENST00000485955 NLRP6P59044 892 aa11.44□□□□□ -0.58
VPS41-213ENST00000485955 NKX1-1Q15270 411 aaPredicted RBP11.44□□□□□ -0.58
VPS41-213ENST00000485955 MAMSTRQ6ZN01 415 aa11.43□□□□□ -0.58
VPS41-213ENST00000485955 L3MBTL3Q96JM7 780 aaPredicted RBP11.42□□□□□ -0.58
VPS41-213ENST00000485955 DNAJC5Q9H3Z4 198 aa11.41□□□□□ -0.58
VPS41-213ENST00000485955 SCUBE2Q9NQ36 999 aa11.41□□□□□ -0.58
VPS41-213ENST00000485955 BOLA1Q9Y3E2 137 aa11.39□□□□□ -0.59
VPS41-213ENST00000485955 PPP1R37O75864 691 aa11.36□□□□□ -0.59
VPS41-213ENST00000485955 TMEM121BQ9BXQ6 578 aaPredicted RBP11.36□□□□□ -0.59
VPS41-213ENST00000485955 MICALL2Q8IY33 904 aa11.34□□□□□ -0.59
VPS41-213ENST00000485955 SLAIN1Q8ND83 568 aa11.33□□□□□ -0.6
VPS41-213ENST00000485955 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.33□□□□□ -0.6
VPS41-213ENST00000485955 G3V3G9 751 aa11.31□□□□□ -0.6
VPS41-213ENST00000485955 C3orf67Q6ZVT6 689 aa11.31□□□□□ -0.6
VPS41-213ENST00000485955 GTPBP6O43824 516 aaPredicted RBP11.29□□□□□ -0.6
VPS41-213ENST00000485955 TMEM92Q6UXU6 159 aa11.26□□□□□ -0.61
VPS41-213ENST00000485955 BBXQ8WY36 941 aaPredicted RBP11.26□□□□□ -0.61
VPS41-213ENST00000485955 RYDENQ9NUL5 291 aaKnown RBP11.21□□□□□ -0.61
VPS41-213ENST00000485955 FAM163AQ96GL9 167 aaPredicted RBP11.16□□□□□ -0.62
VPS41-213ENST00000485955 LCE2DQ5TA82 110 aaPredicted RBP11.15□□□□□ -0.62
VPS41-213ENST00000485955 C2orf72A6NCS6 295 aa11.13□□□□□ -0.63
VPS41-213ENST00000485955 KIF3CO14782 793 aa11.13□□□□□ -0.63
VPS41-213ENST00000485955 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms